Hydrogenophaga sp. PBC: Q5W_13765
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Entry
Q5W_13765 CDS
T04491
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q5W_13765 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_13765 (ligD)
Enzymes [BR:
hyb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q5W_13765 (ligD)
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q5W_13765 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOS79955
LinkDB
All DBs
Position
complement(2904537..2907038)
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AA seq
833 aa
AA seq
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MAASRGDKALRRYQAKRDFSVTPEPGAALGEAGPALSFVVQKHHARRLHYDFRLELDGVM
KSWAVPKGPSLDPADKRMAVEVEDHPVAYASFEGTIPPKQYGAGEVIVWDKGHWQPRGDP
RKGLRTGNLKFEMTGHKLRGAWALVRMKGRDEKKPAWLLIKERDDFARPADEFDVLQADP
DSVSALGVPAPAGWPAAAVPAGLPDTLSPQLAVRAEQPPPDGGEWLYELKFDGYRLLARI
DDRGVRLLTRSGLDWTHRLRPLCRDLAGMKLPPGWYDGELVAFNDRGLPDFGVLQQSLER
ARPGELVLYLFDLPYAAGHDLRAAPLDERRTLLERLIGPTPPDSVRLSAVLEVPGRDVLA
SACRLGLEGVIAKRRDAPYRSRRSEDWLKIKCGLRQEFVIGGFTEGQGTRAGFGSLMLGV
YDRDGALRHVGNVGSGFDTRTLASLHRRLKALERRASAFARTARPTTRPHWVEPRLVAEV
AFAGWTHGGHIRQGVFVGLREDKEARDVTREIPKPTDPPAPVPEPTEPVVPAQPPTAGAR
SLRVTNPQRVIDRRSGLTKLDLVRHYEAVGELMMVHLRERPVALLRAPRGIAGQRFFQKH
MDNELPGIVQLDPALSPGHAPWIAVASARGLLSAAQWNVVEVHTQNASHRRFEQPNRLVF
DLDPGEGVAWPRMQEAALLMQALLDQLGLVGYLKTSGGKGLHVVVPLRPQHGWDTVKGFS
KAVVQHMARTLPDRFVAKSGPRNRVGKVFVDYLRNGRGATTVSAWSARARPGMGVSVPVD
WGELDALEGGDHWTVRNLHERLATGNEPWADYPRRARTLSAAMKRLGFKPEGD
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgtcgaggggcgacaaggccctgcggcgctatcaggccaagcgcgatttttcc
gtcacgcccgagccgggcgcggcgctgggcgaggccggccccgcgctgtcgttcgtggtg
cagaagcaccacgcgcgacgcctgcactacgactttcgcctcgagctggacggcgtaatg
aaaagctgggccgtgcccaagggtcccagcctggacccggccgacaaacgcatggccgtc
gaagtggaggaccatcccgtggcctatgcatcctttgaaggcaccatcccgcccaagcag
tacggcgcgggcgaggtcatcgtgtgggacaagggccactggcagccgcgcggcgacccg
cgcaagggtttgcgcaccgggaatctgaagttcgagatgaccggccacaagctgcgcggc
gcctgggccctggtccgcatgaagggccgcgacgagaaaaaaccggcatggctgttgatc
aaggagcgcgacgatttcgcgcgcccggcggatgagtttgacgtgctgcaagccgacccg
gacagcgtgtccgcgctgggcgtgccggccccggccggctggccagccgccgcggtgccc
gccggcttgccggacacgctctcgccgcaactcgccgtgcgcgcggaacagcccccgccc
gacggcggtgaatggttgtacgaactcaaattcgacggttaccgcctgctggcgcgcatc
gacgaccgtggtgtgcgactcctgacccgcagcggcctggactggacgcaccgcctcagg
cccctatgccgcgacctggcgggcatgaagctgccgccgggctggtacgacggtgagctc
gtggcgttcaacgaccgcggcctgcccgacttcggtgtgctgcagcaatcgctggagcgc
gcccgccccggcgagctggtgctctacctgttcgacctgccgtacgccgccggccacgac
ttgcgtgccgcaccgctggacgaacgccggaccttgctggagcgcctgatcgggcccaca
ccgcccgacagcgtgcgcctgagcgcggtcctggaggtgcctggccgcgacgtgctggcc
tcggcctgtcggctgggcctggaaggcgtgatcgccaagcgccgtgacgcgccttaccgc
agccgccgcagcgaggattggctcaagatcaagtgcggcctgcgccaggaattcgtcatc
ggcggcttcaccgaagggcagggcacgcgcgccggtttcggctcgctcatgcttggcgtg
tacgaccgcgacggcgcgctgcgccacgtgggcaacgtgggcagcggcttcgacacccgc
accctggccagcctgcaccggcgcttgaaggcactggagcgccgcgcatcggcgtttgcc
cgcaccgcccgaccgaccacgcgcccgcactgggtggaaccgcgcctggtggccgaggtc
gccttcgcgggttggacgcacggcggccacatccgccagggcgtgttcgtcggcctgcgc
gaagacaaggaggcccgtgacgtgacgcgagaaatccccaagcccacagacccgcccgca
cccgtgccggagcccaccgagcccgtggtgcccgcccagccgcccacggccggcgcccgc
agcttgcgcgtgacgaacccccagcgcgtgatcgatcgccgcagcggcctgaccaagctc
gatctggtgcgccactacgaggccgtgggcgagctgatgatggtccacctgcgcgagcgg
cccgtggccctgctgcgcgccccgcgcggcatcgcgggccagcgcttcttccagaaacac
atggacaacgagctgcccggcatcgtgcagctcgacccggcgctctcgcccggccacgcg
ccgtggatcgccgtggccagcgcgcgcggcctgctgtcggccgcgcagtggaacgtggtg
gaggtgcacacgcagaacgcttcgcaccgccgcttcgagcagcccaaccgcctggtgttc
gacctcgaccccggcgagggtgtggcctggccccgcatgcaggaagcggcactcttgatg
caggcgctgctcgaccagttgggcctggtcggctacctgaagaccagcggcggcaagggc
ctgcacgtggtggtgccgctgcgcccgcaacacggttgggacacggtgaagggcttttcc
aaggccgtggtccagcacatggcgcgcaccttgccagaccgcttcgtcgccaagagcggg
ccgaggaaccgcgtgggcaaggtcttcgtggactacctgcgcaacgggcgcggcgccacc
acggtgagcgcctggtcggcgcgcgcgcgcccgggcatgggcgtgtcggtgccggtggac
tggggcgaactcgacgcgttggagggcggcgaccactggacggtgcgcaacctgcacgaa
cgcctggccacgggcaacgaaccctgggccgactacccgcgccgcgcgcgcacgctcagc
gccgccatgaagcggctgggcttcaagcctgaaggggactga
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