KEGG   Hydrogenophaga sp. PBC: Q5W_21595
Entry
Q5W_21595         CDS       T04491                                 
Name
(GenBank) exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
hyb  Hydrogenophaga sp. PBC
Pathway
hyb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:hyb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Q5W_21595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hyb03400]
    Q5W_21595
Enzymes [BR:hyb01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     Q5W_21595
DNA repair and recombination proteins [BR:hyb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Q5W_21595
SSDB
Motif
Pfam: Exo_endo_phos Exo_endo_phos_2 Glyco_hydro_47
Other DBs
NCBI-ProteinID: AOS81358
LinkDB
Position
complement(4545040..4545834)
AA seq 264 aa
MFNLTSLNLNGIRSATTKGLEAWLAKSAPDCICMQEVKAQAADVAGRFEELAGMRGHFHF
AQKKGYAGTAVFSRHEPSAVVTGFGTHEFDDEGRYTELRFDTPKRKLSIISVYFPSGSSG
PERQESKYRFLEVFFPHLLTLKSQREFILCGDVNIAHTQNDLKNWRSNQKNSGFLPEERA
WMTRLFGEDVGLIDVYRKLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALAR
TESIFKEQRFSDHAPITIGYDFKL
NT seq 795 nt   +upstreamnt  +downstreamnt
gtgttcaatctgaccagcctcaacctcaacggcatccgctcggcgaccaccaaaggcctc
gaggcctggctggcgaaaagtgcgccggattgtatttgcatgcaggaagtgaaggcccag
gcggccgacgtggccggtcgcttcgaagaactggccgggatgcgcgggcacttccatttc
gcgcaaaaaaagggctacgcgggtacagccgtgttctcgcgccacgagcccagcgcggtc
gtcacgggcttcggcacgcacgagttcgacgacgagggccgctacacagagctgcgcttc
gacacgcccaagcgcaagctgtccatcatcagcgtgtacttccccagtggctcgtcgggg
ccggagcggcaggagtccaagtaccggttcctggaggtcttcttcccgcacctgctgacg
ctcaagtcccagcgcgaattcatcctctgcggcgacgtgaacatcgcgcacacccagaac
gacctgaagaactggcgcagcaaccagaagaacagcggcttcctgcccgaggagcgcgcg
tggatgacccgcctgttcggcgaggacgtcgggttgatcgacgtctaccgcaagctccag
cccgacaccaccgacgcctgctacacgtggtggagcaaccggggtcaggcgtacgcgaac
aacgtggggtggcggctcgactaccacctggccacgccggccatcgccgcgctggcgcgc
accgaatcgatcttcaaggagcagcgcttctccgatcacgcgccgatcacgatcggctat
gacttcaagctctga

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