Hydrogenophaga sp. PBC: Q5W_21595
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Entry
Q5W_21595 CDS
T04491
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hyb
Hydrogenophaga sp. PBC
Pathway
hyb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Q5W_21595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyb03400
]
Q5W_21595
Enzymes [BR:
hyb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Q5W_21595
DNA repair and recombination proteins [BR:
hyb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Q5W_21595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Glyco_hydro_47
Motif
Other DBs
NCBI-ProteinID:
AOS81358
LinkDB
All DBs
Position
complement(4545040..4545834)
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AA seq
264 aa
AA seq
DB search
MFNLTSLNLNGIRSATTKGLEAWLAKSAPDCICMQEVKAQAADVAGRFEELAGMRGHFHF
AQKKGYAGTAVFSRHEPSAVVTGFGTHEFDDEGRYTELRFDTPKRKLSIISVYFPSGSSG
PERQESKYRFLEVFFPHLLTLKSQREFILCGDVNIAHTQNDLKNWRSNQKNSGFLPEERA
WMTRLFGEDVGLIDVYRKLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALAR
TESIFKEQRFSDHAPITIGYDFKL
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaatctgaccagcctcaacctcaacggcatccgctcggcgaccaccaaaggcctc
gaggcctggctggcgaaaagtgcgccggattgtatttgcatgcaggaagtgaaggcccag
gcggccgacgtggccggtcgcttcgaagaactggccgggatgcgcgggcacttccatttc
gcgcaaaaaaagggctacgcgggtacagccgtgttctcgcgccacgagcccagcgcggtc
gtcacgggcttcggcacgcacgagttcgacgacgagggccgctacacagagctgcgcttc
gacacgcccaagcgcaagctgtccatcatcagcgtgtacttccccagtggctcgtcgggg
ccggagcggcaggagtccaagtaccggttcctggaggtcttcttcccgcacctgctgacg
ctcaagtcccagcgcgaattcatcctctgcggcgacgtgaacatcgcgcacacccagaac
gacctgaagaactggcgcagcaaccagaagaacagcggcttcctgcccgaggagcgcgcg
tggatgacccgcctgttcggcgaggacgtcgggttgatcgacgtctaccgcaagctccag
cccgacaccaccgacgcctgctacacgtggtggagcaaccggggtcaggcgtacgcgaac
aacgtggggtggcggctcgactaccacctggccacgccggccatcgccgcgctggcgcgc
accgaatcgatcttcaaggagcagcgcttctccgatcacgcgccgatcacgatcggctat
gacttcaagctctga
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