Hydrogenophaga sp. PAMC20947: E5678_03595
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Entry
E5678_03595 CDS
T05960
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E5678_03595 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyc03400
]
E5678_03595 (mfd)
Enzymes [BR:
hyc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E5678_03595 (mfd)
DNA repair and recombination proteins [BR:
hyc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E5678_03595 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QCB45192
UniProt:
A0A4P7R8D0
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All DBs
Position
complement(780101..783601)
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AA seq
1166 aa
AA seq
DB search
MELPKLNPGKRFTLPRPSGSADALLLAQLAQRDKAQGRLTAIVTSDASDAQRLIDEIGFF
APHLRIALFPDWETLPYDSFSPHQDLISERLATLWRIHTRGDAQHSEGSADVVLVPATTA
LYRLAPPSFLAGYTFHFKVKQQLDEAKLKSQLTLAGYQHVTQVVSPGEYAVRGGLIDLFP
MGSLVPFRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDAARAKFRSRWRE
LLEGDPTKSRIYKDVGNGVATAGIEYYLPLFFEETATVFDYLGEAATVVLHGDLEPAFQR
FWQDTQERYRIVRTDPERPALPPESLFLSAEQFYSQANAHAQLAVRPALEDVADNAFAQK
LGDLSVVRGAEDPLARMQAHIRNTAHRVLILAESEGRRESLLDFLRASGLNPPAFDSLAE
FQTSAEKVGIATAALTVGFSSVEDRIDFVTETELFAAGPSARRRRKQEQVSDVDALIKDL
SELNLGDPVVHNAHGIGRYRGLINMDMGDKNPDGSPALMEFLHLEYADKAVLYVPVSQLQ
LIGRYTGVSADEAPMHKLGSGQWEKAKRRAAEQVRDAAAELLNIYARRAARQGHAFRYSA
QDYEIFANDFGFDETADQNAAIHAVIQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVT
GGRQVAFLAPTTLLAEQHFQTLVDRFAKWPVKIAEMSRFRSQKEITLALKGVADGTVDIV
VGTHKLLSEKTKFKDLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMAL
EGLRDLSVIATAPQRRLAIKTFVRSESNGVIREAILRELKRGGQVYFLHNEVDTIENRKQ
KLEELLPEARIAIAHGQMPERELERVMRDFVAQRFNVLLCSTIIETGIDVPTANTIVMAR
ADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAAQRLDAIQQMEELGSGFYLAM
HDLEIRGAGEVLGESQSGNMLEVGFQLYNEMLSEAVASLKAGREPDLLSPLSVTTDINLH
APALLPNDYCGDVHLRLSFYKKLATAKTTDQVDGLLEEIVDRFGKLPVQAQTLIDVHRLR
VLSTPYGVVKVDAAPGVTNITFRANPPIEPMKIIELIQKNRHIKLAGNEKLRIERELPEV
KDRVLLVRDVLRNLGQPVKPPETAKV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggaactgcccaagctcaaccccggtaaacgctttaccctgccccgtcccagcggttcg
gctgatgcattgctgctcgcccagctcgcccagcgcgacaaagcccaagggcgcctgaca
gcaatcgtcacgtccgacgcaagcgacgcccaacgcctgatcgatgaaatcggctttttt
gcaccccatctgcgcattgcacttttccccgactgggaaaccctgccctatgacagtttt
tcaccgcatcaggacctgatctcggagcggctggccacactctggcgcatccacacccga
ggcgacgcccagcacagcgaaggcagcgccgatgtggtgctcgtgcctgccacgacagcg
ctctaccggctcgcacccccctcgtttttggcgggctacaccttccacttcaaggtcaag
cagcagcttgacgaggccaagctcaagagccaactcactttggcgggttaccagcacgtc
acccaggtggtcagcccaggtgaatacgccgtgcgcggcggcctgatcgacctgttcccc
atgggctctctggtgcctttccgcgttgatttgttcgacgatgagatcgacagcatccga
accttcgaccccgacagccaacgcagcctttacccggtgcccgaggtgcgtttgctgccc
ggtcgcgagttccccatggacgatgccgcacgggccaagttccgcagccgctggcgcgaa
ctgctggaaggcgacccgaccaagagccgcatctacaaagatgtgggcaatggcgtggca
accgccggtatcgagtactacctgcccctcttctttgaagaaaccgccaccgtatttgat
tacctgggtgaagccgccacggtcgtattgcacggcgatctggagcccgctttccaacgt
ttctggcaagacacgcaggagcgctaccgcatcgtgcgcaccgatccggagcgccctgcc
ttgccacccgaatcgctgttcctgagcgccgagcagttctacagccaggccaatgcccac
gcgcagctggcggtacgtcccgcgctggaagatgtcgccgacaacgcttttgcgcaaaag
ctgggtgacctctcggtggtgcgcggtgcagaggatccactggcgcggatgcaagcgcac
atccgcaacacggcccaccgtgtgctgatcctggccgagagcgaaggtcggcgcgagagc
ttgctcgatttcttgcgtgccagcgggttgaatccgcccgcgtttgactcgctcgccgag
tttcagaccagtgcggagaaggtcggtatcgccaccgccgcattgacggtcggcttttcg
tcggtggaagaccgcatcgatttcgtcaccgaaaccgagctgtttgcggccggaccgtcg
gctcgacggcgccgcaagcaggagcaggtcagcgatgtcgatgcgctgatcaaggacctg
tctgagctcaatctgggtgatccggtggtgcacaacgcccacggtatcgggcgctaccgt
ggcctgatcaatatggacatgggcgacaagaaccccgacggttcgcccgcattgatggag
tttctgcacctggagtacgccgacaaggcggtgctctatgtgccggtgagccaattgcag
ctgatcggccgctacaccggcgtgagtgcggacgaagcccccatgcacaaactgggcagc
gggcaatgggaaaaagccaagcgccgcgctgccgagcaggtgcgcgacgcagccgccgag
ttgctcaacatctacgcccgacgagccgcgcgccagggccatgcctttcgctactcggca
caggactacgaaatattcgccaacgacttcggttttgacgaaacggccgaccagaacgca
gccatccacgccgtgatccaggacatgatcagcccccagcccatggaccgcctggtctgc
ggcgatgtggggttcggaaaaaccgaggtggcgctgcgcgcggccttcgtggccgtcaca
ggcgggcgtcaggtggccttcctcgccccgaccacgctgctggccgagcagcactttcag
acgctcgtggaccgcttcgccaagtggccggtgaagatcgccgagatgagccgcttccgc
tcgcaaaaggaaatcacccttgcgctcaaaggtgtggccgatggcacggtggacattgtg
gtcggcacacacaaactgctgtcggagaaaaccaagttcaaagacctcggcctgctcatc
atcgacgaggagcaccgttttggcgtgcgccacaaagaacagatgaagcaactgcgcgcc
gaggtcgatgtgctcaccctcacggcgacccccatccctcgcaccttgggtatggcgctg
gaagggctgcgcgatctgagcgtgatcgccaccgcgcctcagcgccgcctggccatcaag
acctttgtgcgttccgagagcaacggtgtgatccgtgaagccatactgcgtgaactgaag
cgcggcggacaggtctatttcttgcacaacgaagtcgacaccatcgagaaccgcaagcaa
aagctcgaagaactgctgcccgaagcgcgcattgccattgcccacggtcagatgccagag
cgcgagctggaacgcgtgatgcgcgattttgtggcgcagcgcttcaacgtgttgctctgc
tccaccatcatcgaaacgggcattgacgtgcccacggccaacaccatcgtgatggcgcgg
gccgacaagttcggtctggcgcagctgcaccagctgcgcggtcgcgtgggccgcagccac
catcaagcctacgcttacctgatggtgcccgacatcgagggcctgaccaaacaggccgca
caacgcctggacgccatccagcaaatggaagagctgggcagcggcttttacctcgccatg
cacgatttggagatccgcggcgccggcgaggtactgggtgaaagccagagcggcaacatg
ctcgaggtgggtttccagctctacaacgagatgctgagcgaagccgtagcctcactcaaa
gccgggcgcgagcccgacctgctctcccctctctcggtcaccaccgacatcaacttgcac
gcccctgcgctcctgcccaacgactactgtggtgatgtgcatctgcgcctgtcgttctac
aaaaaactcgccacggccaagaccaccgaccaggtggacggattgctggaagaaattgtg
gaccgttttggcaagctgcccgtgcaggcgcagacgctgatcgacgtgcaccgcctgcgg
gtgctgagcacaccctacggcgtggtgaaagtggacgccgcgcccggggtgaccaacatc
accttccgagccaacccacccattgagcccatgaagatcatcgagctgattcagaagaac
cgccacatcaagctggcggggaacgagaagctgcgcatcgagcgggaactgcccgaggtg
aaagaccgcgtgttgctggtgcgcgatgtgctgcgcaacctggggcagccggtgaaacca
ccggagacggcgaaggtctga
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