Hydrogenophaga sp. PAMC20947: E5678_19020
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Entry
E5678_19020 CDS
T05960
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
hyc
Hydrogenophaga sp. PAMC20947
Pathway
hyc00550
Peptidoglycan biosynthesis
hyc01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hyc00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
E5678_19020 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hyc01002
]
E5678_19020 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hyc01011
]
E5678_19020 (dacB)
Enzymes [BR:
hyc01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
E5678_19020 (dacB)
Peptidases and inhibitors [BR:
hyc01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
E5678_19020 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
hyc01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
E5678_19020 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
QCB48822
UniProt:
A0A4P7RHR1
LinkDB
All DBs
Position
complement(4165306..4166715)
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AA seq
469 aa
AA seq
DB search
MSTLPPSVLAALQRAGVPAQAMSALVLPVKSGGGERLSYRADASVNPASVMKLVTTYAAM
DMLGPDFTWRTDFYTDGRLDNGSLRGNLYIRGGGDPKLVLERIHAAFWALQDKGVRVILG
DMVLDHSAFELPEHDPGDFDGESLRPYNASPDALLVNFKSVILTFQPDAAAGVARVVSEP
PLAGLAVDATVPLSRAACGDWRGALVARFEDANTIRFEGQYPSRCGEKVWPVAYQDPASY
AARAMEGLWRASGGALTGRARTGLTPPGVKLLYEAQSLPLSEIIADVNHFSNNVMAQQVF
LTLGRLAPARQEVRGVTRDQFQPLRTGRFERSREALSQWWRTTFGIRSTEPIMENGSGLS
RNERITPQALATMLQHAARHPNGERFVQSLSVAGVSGTAARMAQGPNSLARGNAWLKTGT
LRNVTGIAGFVDAVGGQRYVVVGFVNHEQASAARPALDALVEWTAGLPN
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccctgccgcccagcgtgctggcggctttgcagcgcgccggcgtgcccgcacag
gccatgtcggcgttggtgctgcctgtaaaaagcggtggtggcgagcgtttgagctaccgg
gccgatgcatcggtcaacccggcctcggtgatgaaactggtgaccacctacgccgccatg
gacatgctgggccccgacttcacctggcgcaccgatttttataccgacgggcggctggac
aacggcagcctgcgcggcaacctgtacatccgaggcggcggcgatcccaagctggtgctg
gagcgcatccacgcggccttctgggcgctgcaggacaagggtgtgcgcgtcattttgggc
gacatggtgctcgaccacagcgcctttgagctgcccgaacacgaccctggcgatttcgac
ggcgagtccctgcgcccctacaacgccagccccgatgccttgctggtcaatttcaaatcg
gtcattctgacttttcagcccgatgcggccgccggtgtggcgcgcgtggtgagcgagccc
ccattggccggactcgcggttgatgccacggtgcccttgtcgcgggccgcctgcggcgac
tggcgcggcgccctggtcgcgcggtttgaagacgcgaacacgatccgctttgaaggccag
taccccagccgctgcggcgaaaaagtatggcctgtggcctaccaggacccggccagctac
gccgcacgcgccatggagggtttgtggcgcgccagcggtggcgcgttgacggggcgggcc
cgcacgggcctcacgccgcccggcgtgaagctgttgtacgaagcccagtcgctgccgctc
tctgagatcattgcggacgtcaaccacttcagcaacaacgtgatggcccagcaggtcttt
ctcaccctgggccggctcgcacccgcacggcaagaagtgcgcggggtcacgcgagaccag
ttccagcccctgcgcaccggccgcttcgagcgttcgcgcgaagccctgtcccagtggtgg
cgaaccacatttggcatccgcagcaccgagcccatcatggaaaacggctcaggcctctcg
cgcaacgaacgcatcacgccccaggcgttggccaccatgctgcagcacgccgcgcggcac
cccaatggcgagcggtttgtgcagtcgctgtcggtggccggggtgagcggcaccgccgcc
cgcatggcccagggccccaacagcctggcgcgcggcaacgcctggctgaagaccgggacc
ctgcgcaacgtgaccggcatcgccggcttcgtggacgcggtcggcgggcagcgctatgtg
gtggtggggtttgtgaaccacgagcaggcgtctgcggcccggcccgcactcgatgcactc
gtcgagtggacggcagggctgcccaactga
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