Hydrogenophaga crassostreae: LPB072_01500
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Entry
LPB072_01500 CDS
T04505
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hyl
Hydrogenophaga crassostreae
Pathway
hyl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB072_01500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hyl03400
]
LPB072_01500
Enzymes [BR:
hyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
LPB072_01500
DNA repair and recombination proteins [BR:
hyl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LPB072_01500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Glyco_hydro_47
Motif
Other DBs
NCBI-ProteinID:
AOW15287
UniProt:
A0A167GUM7
LinkDB
All DBs
Position
305560..306351
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AA seq
263 aa
AA seq
DB search
MFKLTSLNLNGIRSATSKGLEDWLAKHEPDCICVQEVKAQAPDVAGKFEALAGLKGHFHF
AEKKGYSGAGIYTALEPSDVLVGFDGGEFDSEGRYVELRFDTPKTKYSIISSYFPSGSSG
EERQAAKFRFLNLMYPHLMALKSQREFILCGDINIAHQNIDLKNWRSNQKNSGFTPEERA
WMTQFLTVGGIVDVYRQLHPEATETAYTWWSNRGQAYANNVGWRLDYHLATPALAAGARR
ASVYKDQKFSDHAPLTIEYDFKV
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
ttgttcaaactcaccagcctcaacctcaacggtatccgttcggccacttccaagggactg
gaagactggctggccaagcacgagcccgattgtatttgcgtgcaggaggtcaaggcgcag
gcgcccgatgtggccggcaagttcgaagcgctggcaggcctgaaaggccactttcacttc
gccgagaaaaaaggctattcgggcgcaggcatctataccgcgctggagcccagcgatgtg
ctggtgggctttgacggtggggagttcgacagcgaaggccgttatgtcgagctgcgcttt
gacacacccaaaaccaaatattccatcatcagctcgtactttcccagcggctcttcaggc
gaggaacgccaggcggcgaagttccgtttcctcaacttgatgtatccccacctgatggcg
ctcaaaagccagcgggagttcattttgtgtggcgacatcaacatcgcccaccagaacatc
gacctgaagaactggcgcagcaaccagaaaaacagcggcttcacgcccgaagagcgcgca
tggatgacccagttcctgacggtcggcggcatcgttgatgtgtaccgccagctgcacccg
gaggccaccgagaccgcctacacctggtggagcaaccgcggccaggcctatgcgaacaac
gtggggtggcgtctggactaccacctggccacgcctgcgcttgcggccggcgctcgccgg
gcctcggtgtacaaggatcagaagttcagcgatcacgccccgctgacgatcgaatacgat
ttcaaggtctga
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