Helicoverpa zea (corn earworm): 124637388
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Entry
124637388 CDS
T08400
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
hze
Helicoverpa zea (corn earworm)
Pathway
hze03440
Homologous recombination
hze03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124637388
03450 Non-homologous end-joining
124637388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hze03032
]
124637388
03400 DNA repair and recombination proteins [BR:
hze03400
]
124637388
DNA replication proteins [BR:
hze03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
124637388
DNA repair and recombination proteins [BR:
hze03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
124637388
BRCA1-C complex
124637388
NHEJ (non-homologous end-joining)
MRX complex
124637388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_21
FlxA
AAA_29
AAA_22
AAA_5
AAA_16
ABC_tran
ADH_zinc_N
NACHT
DUF6074
Motif
Other DBs
NCBI-GeneID:
124637388
NCBI-ProteinID:
XP_047029771
LinkDB
All DBs
Position
16:6979974..6987869
Genome browser
AA seq
1304 aa
AA seq
DB search
MAVVKSLKIRGIRSFGPDDSDEQGISFESPLTLILGQNGCGKTTIIESLRYAITSQMPPG
MGHSDCFVHDPKVNRTSEVLAQIKLKLANAQSKNLEITRSMKVALTKKKTTFRTMDSLLS
VTDDTGRTKDISKKCADLDSVLHDELGVSKAILNAVIFCHQEESSWPLDEGKKVKERFDE
IFDSDKYSNCFDRLKKIRKAYAVDIKILVDRVEVLEEQKKELDKKKLDVINTETRISETE
LMLCEITKELKPIEETLRSIKTLETTLNTYDTKLDKLKVKLEHCHKRDQELKKEIKNMFE
GTLPELKEKISNYEATVKANQKELEESYSKISNFNNEEERVANEKDANKSKLEKLILLDS
QNDKKMVERNEMIVNVAKLAGVDEIVAVESSEEAVQAIKKLTERIESLKQELKELKSLAD
KEQKQKQSLVDESLVALTRHNQQISSKESDIEKNKKEVTKLEKEIVAANESKIRLEAAEK
KFKVAEEEYEKVEKELNTEEHQNQINEDEKELEKQEEELEVIDGKIAKLQKQSALLKERE
VKEELLKEEEKQFAVLKNKHRTSLTELLGNMPEKDFTLSLKKLESTLNPEINALKKELNE
KKTQITKLEEERKHVRRTLMERNKKQEEAEEQMYKACGATSYENTLAKVTANVEKLQDER
NVLESSMFVITKYESQLKANSCCPLCNRGFDSESEVTDLISQLNTKVMNVPEQLKKVTEE
LQKESSRKDELLGMASLNERIKLFKEKDKPQLEQNIADVETKINKLTEEVDGLSMSLLEP
EQKLQTIKQIQGDMPMLDRGNQKIEKLAQKFEEIKAQCSTVDTDMTLEEASAKQTEIKQK
IAALKAKLKEAQKKLNVHNKKMQELGVKKNKIKEECLNLQKKVQEIYNLQETKKQLEANR
EKYIEELAELKDGVAPLKEALKEKEQAKAEVVKENRAKIEAKNSEIMKVSIAFDKVKSID
LDIRQHIERNIPHEKSKKEEAIKKLEDKLKKIQSDRQATTKRIETLKDDIAKEKIYKREL
DDNLKLREVQKETQECEKEESEIKEKLSTINRDIINEKDALLVKHRKLSNDKSKTDGILD
ELQTTLKKNKADLKTALGKDIEKKYREKFYELQVTRMLDKDVKDYSVALEKCLMEYHKKK
MESINLIIKELWSKIYSGNDIDYIAIKAEGSMSMESERRKYEYRVIQCKNGIEIDMRGRC
SAGQKVLACLIIRLALAETFSSRFGVLALDEPTTNLDHDNVKSLCMALGEIVQERMIQKN
FMFIIITHDREFIESLGQIDKVTHFFEVSRNDEGKSRIKRVKFS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcgttaagtctttaaagatacgaggtatacgtagttttgggcccgatgattcc
gatgaacaagggatatcctttgagagtcctctaactctgatactgggacaaaatggatgt
ggtaaaacaacgatcattgaatccttgcgttatgctatcacgtcacaaatgccgccgggg
atgggtcacagcgactgttttgtacatgacccaaaagttaataggacgtccgaagttcta
gcgcaaataaaactgaagcttgcaaatgcacaaagtaaaaatttggagataacaagatct
atgaaagtagctctaactaaaaagaaaacaacttttcgcactatggactccttactatct
gttactgatgacaccgggagaacgaaggacatttccaaaaagtgtgctgatctggattca
gttctacatgatgaacttggagtttcaaaggcaatcctcaatgcagttatattttgtcac
caagaagaatctagctggcccctagatgaaggcaaaaaagtaaaggaacgctttgatgaa
atatttgattcagataaatacagtaactgttttgaccgtctcaaaaaaatcagaaaagct
tatgcagttgatatcaagatccttgtggatagagtggaagttctagaagaacaaaagaaa
gaattagataagaagaaattagatgtgatcaatactgaaactagaatatcggagactgaa
ttaatgctctgtgaaattaccaaagagcttaaaccgattgaagaaacattacgctccatt
aaaactttggaaacaacactaaatacatatgataccaaactagacaaactaaaagtgaaa
ttggaacactgtcataaaagagaccaagagttaaaaaaagagattaagaacatgtttgag
ggtacactaccagaattaaaagaaaaaataagtaactatgaagccacagtaaaagctaat
caaaaagaacttgaagaatcatactcaaaaatttctaatttcaataatgaagaagaaaga
gttgcaaatgaaaaggatgcaaataagtcaaaacttgaaaaacttatcttgttggatagt
caaaatgacaaaaagatggtggagcgaaatgaaatgattgtgaatgttgcaaaattagct
ggagttgatgagatagtggcagtagagtctagtgaagaagcagtacaggctataaagaaa
ctaactgaaaggattgaaagcttaaaacaagaactgaaggaattaaaatcattagctgat
aaggaacagaaacagaagcagtcattagtggatgaaagtcttgttgctctcactcgtcac
aaccaacaaatttcaagtaaagaaagtgacattgaaaaaaataaaaaagaagtaacaaaa
ttagaaaaagaaattgttgctgctaatgagtcaaaaatacgactagaagctgctgaaaag
aaattcaaggttgcagaagaagagtatgaaaaggtggagaaagaattaaacacagaagag
catcaaaatcaaatcaatgaagatgaaaaggaattggagaaacaggaagaagaacttgaa
gtcattgatgggaagattgcaaaattacaaaaacagagtgccttacttaaagaacgcgaa
gtgaaagaagaattactgaaggaagaagaaaaacagtttgctgtgcttaaaaacaagcat
aggacatctctaacagaactactgggcaacatgccagagaaggatttcactttatccctt
aaaaagttagaatctacgttgaatcctgaaataaatgcactgaaaaaggaattgaacgaa
aagaaaacgcaaataactaagcttgaagaggaacggaaacacgttcgcagaactttaatg
gaacgcaacaaaaaacaagaagaggcggaagaacaaatgtacaaagcttgtggagcaacg
tcctatgaaaatacgttggctaaagttactgctaatgttgagaaattgcaggacgaacgc
aatgttctggaatcatctatgtttgtcataactaaatatgaatctcaactaaaagccaat
agttgttgtccgttatgcaaccgtggatttgattccgaaagtgaggtgacagatttaatt
agtcagctcaatactaaagtcatgaatgttcccgaacaactaaagaaagttacagaagaa
ctgcaaaaggaatcgtctcgaaaagacgaactgttaggtatggcatcgctaaacgaaaga
attaaattgttcaaagaaaaagacaaaccacagttggaacaaaacatagctgatgtcgaa
acgaaaataaacaaactaacagaagaggttgacggactgtctatgtctctcctagaacca
gagcaaaagctacagacaatcaagcaaattcaaggagatatgccaatgctagataggggg
aaccaaaaaattgaaaaattggctcagaagtttgaagaaattaaagcacaatgttcaaca
gtagatacagatatgactttagaagaagcttctgccaagcaaactgaaataaaacaaaag
atagcggcattgaaggcaaagctcaaggaagctcagaagaaacttaatgttcacaataaa
aagatgcaggaactaggagtaaagaaaaacaaaattaaagaggaatgcctgaatttgcaa
aagaaggttcaagaaatatacaatcttcaagagactaaaaaacaattagaagcgaataga
gaaaagtacatagaggaactagcagaactgaaagatggcgtggcaccattaaaagaggca
ctcaaggagaaagagcaagctaaagctgaggtcgtaaaagagaacagagctaaaatagaa
gccaagaatagtgagataatgaaagtgtccatagcatttgacaaagtcaagtcgatcgat
cttgatataagacagcatatagaaagaaatattccccatgaaaagtcaaagaaagaggaa
gcaataaagaagttagaagacaaacttaaaaagatacagagtgatagacaagctactact
aagaggatagagactttaaaggacgatattgccaaagaaaagatttacaaacgcgaatta
gacgacaatttgaaactaagagaagtacaaaaagaaacacaagagtgtgaaaaagaagaa
tccgagattaaagaaaaattgagtacaataaacagagatattataaatgaaaaggatgct
ttgttagttaaacacaggaagctttcgaatgataagtctaaaactgatggtatactggat
gaactgcagaccacactaaagaaaaacaaagccgatcttaaaactgccttaggaaaagac
attgaaaagaaatacagggagaaattctatgagttacaagtaacaagaatgttggataag
gacgtaaaggattattctgttgctttagaaaagtgtctcatggaataccacaagaagaag
atggagagcatcaatcttataataaaggaactttggagcaaaatctacagtggtaatgac
atagattatatagctattaaagctgaaggtagtatgtccatggagtcagaacgtcgtaaa
tatgaatacagggtaattcagtgtaaaaacggtattgaaatcgacatgagaggacgatgc
agtgctgggcaaaaggtcttggcttgtcttatcataagactggctctcgcagaaacattt
agttccagatttggagtattagctttagacgagcctactacgaatttagatcatgacaac
gtaaaaagtctttgtatggccctcggtgaaatagtacaagagagaatgattcaaaagaac
tttatgttcattatcattactcacgacagagagtttattgagtctctaggacaaatagac
aaggttacgcacttctttgaggtgtccagaaatgacgaaggcaaatctagaattaaaaga
gttaagttttcataa
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