Intrasporangium calvum: Intca_0626
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Entry
Intca_0626 CDS
T01385
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ica
Intrasporangium calvum
Pathway
ica03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ica00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Intca_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ica03400
]
Intca_0626
Enzymes [BR:
ica01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Intca_0626
DNA repair and recombination proteins [BR:
ica03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Intca_0626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ADU47171
UniProt:
E6S9Y1
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All DBs
Position
685541..686491
Genome browser
AA seq
316 aa
AA seq
DB search
MRPMLATPAPTIPAGHAWIHEVKWDGMRILADVSEGSVRLTSRTERDVTVAFPEMSGLAG
EYADMLLDGEIVCFDAGKPSFGLLAERFHVTNARRAMLLAERSPVTLMTFDLLRLYGVEL
LGRAWSDRRATLERLELDGARWQTPPIFEDGHLLHAATREQGLEGIVSKRTSSVYRPGVR
SPDWLKSPHRGSASVVIGGWRPESTGTVPDRLGAVLVGTPGPDGLRFVGRVGAGLAGRAG
DALRQALAPLERAASPFAAALPAEDSVGAHWVHPVLIADVESLGLGHQGRLRQPAFKRLR
EDLTPEDVEDLLDGGV
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgcgccccatgctcgcgacgccagcgccgacgattcctgccggccacgcgtggattcac
gaggtgaaatgggacggcatgcgcatccttgcggatgtcagcgaggggagcgtgcgcctc
acgtcacgaaccgagcgcgacgtcacggtggcctttccggagatgtcggggctcgccggt
gagtatgccgacatgctgctcgacggggagatcgtctgtttcgatgcggggaagccgtcc
ttcggcctcctcgccgagcggttccatgtgacgaacgcgaggcgagcgatgctcctggcg
gaacgcagcccggtgacgctgatgacgttcgacctgctccggctctacggcgtcgagctc
ctcggccgcgcctggtccgaccgacgcgccaccctggagcgcctcgagctggatggggcg
cgctggcagacgccgccgatcttcgaggacggacacctcctgcacgccgccacccgggag
cagggcctggaggggatcgtcagcaagcgcaccagctccgtctaccggccgggtgtccga
tcgcccgactggctcaagtcgccgcaccggggaagcgcgtccgtcgtgatcggcgggtgg
cggcccgagtccaccggaacggtcccggaccgcctcggcgccgtcctcgtcggcacgccc
ggcccggacggcctgcgcttcgtcggccgggtcggggccggcctcgccgggcgagcgggg
gacgcactgcgtcaggccctggccccgctggagcgtgcggcctcgcccttcgccgccgcg
ctccccgccgaggactcggtcggggcgcactgggtgcaccccgtcctcatcgcggacgtc
gagtcgctcggcctcgggcaccagggacgccttcggcagcccgccttcaagcggctgcgg
gaggacctcacgcccgaggacgtcgaggacctcctcgacggaggtgtctga
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