KEGG   Intrasporangium calvum: Intca_0626Help
Entry
Intca_0626        CDS       T01385                                 

Definition
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ica  Intrasporangium calvum
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ica00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Intca_0626
Enzymes [BR:ica01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Intca_0626
DNA repair and recombination proteins [BR:ica03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Intca_0626
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
685541..686491
Genome map
AA seq 316 aa AA seqDB search
MRPMLATPAPTIPAGHAWIHEVKWDGMRILADVSEGSVRLTSRTERDVTVAFPEMSGLAG
EYADMLLDGEIVCFDAGKPSFGLLAERFHVTNARRAMLLAERSPVTLMTFDLLRLYGVEL
LGRAWSDRRATLERLELDGARWQTPPIFEDGHLLHAATREQGLEGIVSKRTSSVYRPGVR
SPDWLKSPHRGSASVVIGGWRPESTGTVPDRLGAVLVGTPGPDGLRFVGRVGAGLAGRAG
DALRQALAPLERAASPFAAALPAEDSVGAHWVHPVLIADVESLGLGHQGRLRQPAFKRLR
EDLTPEDVEDLLDGGV
NT seq 951 nt NT seq  +upstreamnt  +downstreamnt
atgcgccccatgctcgcgacgccagcgccgacgattcctgccggccacgcgtggattcac
gaggtgaaatgggacggcatgcgcatccttgcggatgtcagcgaggggagcgtgcgcctc
acgtcacgaaccgagcgcgacgtcacggtggcctttccggagatgtcggggctcgccggt
gagtatgccgacatgctgctcgacggggagatcgtctgtttcgatgcggggaagccgtcc
ttcggcctcctcgccgagcggttccatgtgacgaacgcgaggcgagcgatgctcctggcg
gaacgcagcccggtgacgctgatgacgttcgacctgctccggctctacggcgtcgagctc
ctcggccgcgcctggtccgaccgacgcgccaccctggagcgcctcgagctggatggggcg
cgctggcagacgccgccgatcttcgaggacggacacctcctgcacgccgccacccgggag
cagggcctggaggggatcgtcagcaagcgcaccagctccgtctaccggccgggtgtccga
tcgcccgactggctcaagtcgccgcaccggggaagcgcgtccgtcgtgatcggcgggtgg
cggcccgagtccaccggaacggtcccggaccgcctcggcgccgtcctcgtcggcacgccc
ggcccggacggcctgcgcttcgtcggccgggtcggggccggcctcgccgggcgagcgggg
gacgcactgcgtcaggccctggccccgctggagcgtgcggcctcgcccttcgccgccgcg
ctccccgccgaggactcggtcggggcgcactgggtgcaccccgtcctcatcgcggacgtc
gagtcgctcggcctcgggcaccagggacgccttcggcagcccgccttcaagcggctgcgg
gaggacctcacgcccgaggacgtcgaggacctcctcgacggaggtgtctga

DBGET integrated database retrieval system