Ictalurus furcatus (blue catfish): 128620151
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Entry
128620151 CDS
T09387
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ifu
Ictalurus furcatus (blue catfish)
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128620151 (chd1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128620151 (chd1)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
128620151 (chd1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
128620151 (chd1)
SLIK complex
128620151 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
128620151
NCBI-ProteinID:
XP_053500832
LinkDB
All DBs
Position
16:complement(19003985..19024380)
Genome browser
AA seq
1816 aa
AA seq
DB search
MDGRSEDESVSNSSGDSSNSDDESGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSG
SQSDSDSEKSKGKNGQNNSAKIDSSEFWKSNPSILAVQRSAMLRKQQQQQQQQQQQSSSN
SDSDEESSSSDDSDDDSSRKRKSKGTGSESDSGSGSGSGSGSDSSNSSAEEEAENSEESV
SDYEPSHKVKSRKPPNKINARNGKKSKVSKKKPSASSSDEDDDYKKALAGPRRQATVNIS
YKEDEELKTDSDDLVEVCGEDVPPPEEDEFETLERVMDVRIGRKGATGATTTVYAVEADG
DPNANFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNFKKKEQEKKK
WLKTASPEDVEYLNCQQELMDDLHSQYQLVERIISHSNQKSAAGYPDYLCKWQGLPYSEC
SWEDGALIARKFQKCIDDYMSRNQSKTIPFRDCKVLKLRPRFVPMKKQAHYIGGEGLELR
DYQLDGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIHLWAPLMNVVVYLGDISSRNMIRTHEWMHAHNKRLKLNILLTTYEILLKDKSF
LGNVSWAFIGVDEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLRFIMP
EKFHSWERFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQ
KQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFYNKAEALQH
LIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSRQFLFQRLDGSIKGEM
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKV
ANFTMMEEEDMDMDSDGNRKTWDSIIPEEQRRRLEEEERQKELAEIYMLPRMRNCAKQIS
FNGNEGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIEWGKDDDSS
LLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKK
EAQRQTGMANSRKRKPRGKKNKTVKPKVDEMVNSLSSAPPSEKSSEDEDYKEDEKDSPPA
KPTPPNRRGRASDRVIKEEEEEEEEEEEEEEEEEPEPEPTVKEPEEKEIKEREIKKDIKQ
DKKEEGRDIKVKKEPKEKKESKPVEYRVEESFIEKSPEIKVEVREKSKKADTPVHITAGG
ENVPVSEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDH
ITDCLKEYTNLEHIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTST
VNTQAFRHTDIERLKDSQQDESSRDSYSSDRHHSTSRSHEQSKERHSGDSYRKSSDSRKR
PYSSFSNGKDHRERDHYRERQDSRYYSDSKHRKLDDHRSSRDNWSDGNNKERVHSEHRSL
SEHRSSSDYSHHKASRDYRYHSDWQLEQRASGSGPRSPRDQRSPYDSRSPMGHRSPFEYS
SEHKSTPEQVWSSRKT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagcagcggagattccagtaactcg
gacgatgagtctgggtctgggtctggatctggttccggttctggttccagctccagcagc
agcagctccagtagcagccagtcagggagcagcgactcaggaagtggctcagactcgggc
agccagtccgattctgactctgaaaagtccaaggggaagaatggtcagaataactctgcc
aagattgattcatcagaattttggaagtctaatcccagtatcctggcagtgcagaggtca
gctatgctcaggaaacagcagcagcagcaacaacaacaacagcaacagagctcgtcaaac
agtgactcggatgaggaatcctccagtagtgatgactcggatgatgactcttcgaggaaa
cgaaagagtaaaggaactggttccgagtccgattctgggtctggctctggatctggttca
gggagtgactcctccaattcttcagccgaggaagaggcagagaacagcgaagagtccgtt
tcagactatgagcctagccacaaagttaaaagcaggaagccacctaacaagattaatgcc
agaaatggaaaaaagagcaaggtttcaaaaaagaagccctcagcctcttcgtcagacgag
gatgatgactataaaaaggctctggcaggtcctcggaggcaggctacagtgaacatcagc
tataaagaggatgaagaactgaaaacagactctgatgacttggtggaggtatgtggggag
gacgtcccaccgcctgaagaggatgagtttgagactctggaaagagtgatggacgtgaga
ataggacgaaaaggagccactggggctaccaccacagtctatgctgttgaggctgacgga
gatcctaatgccaacttcaacccaaacaagcagccaggagatgtgcagtacttgatcaaa
tggaaaggttggtcacacattcacaatacctgggagacggaggagacgctgaagcagcag
aacgtgaggggcatgaagaaactggacaatttcaaaaagaaggaacaggaaaagaaaaag
tggctcaaaacagcttcacctgaggatgtggaatacttaaactgccagcaggagctcatg
gatgacctgcattcacagtatcagcttgtggagagaattatcagccattcaaatcagaag
tcggcagcaggctacccagactacttatgcaaatggcaagggcttccatattcagaatgc
agctgggaagacggggcacttatcgctagaaagttccagaagtgcatagatgactacatg
agccggaaccagtccaaaacaatccccttcagggactgcaaggttttgaagctgaggcca
cggtttgtgcccatgaagaaacaggctcattatatcggtggggaaggacttgagcttcga
gactaccagttggacggcttaaactggatggcccattcgtggtgcaaagggaacagttgt
attctagcggatgagatgggccttggaaagaccattcagaccatctcctttctgaactat
ctgttccatgagcaccagctctatgggccgttcctactggtggtgcccttgtctacactc
acctcttggcagagggaaatccatctctgggccccactgatgaacgtggtcgtctacctg
ggtgacatcagcagtaggaacatgatcagaacacatgagtggatgcatgcccacaacaag
cggctaaagctcaacatccttctcactacgtatgaaatcctcctgaaagataagtcattt
ctggggaacgtgagctgggcgtttattggtgtggacgaggcccacaggttgaagaatgat
gattcccttttgtataagaccatgattgagttcaagtccaatcaccggctccttatcaca
ggaacacctctgcagaattccctcaaagagctatggtcactcctccgcttcatcatgcca
gagaagtttcactcgtgggaacggtttgaggaagagcacggtaaaggcagggactcgggc
tacactagcttgcacaaggagctggagcctttcttgctacgcagggtcaagaaggatgtg
gagaagtcactacctgccaaggtggaacagatccttagggtggagatgagtgccatccag
aaacaatactacaagtggattttgacaagaaactacaaggcactcagcaaaggcacgaaa
ggaagcacatccggtttcctcaacatcatgatggagctgaagaagtgctgtaaccactgc
tacctcatcaaaccaccagaggacaatgagttttacaacaaagcagaggccttgcagcac
ctaattcgcagtagcggtaagctggtacttctggacaagctcctggtgcggctgaaggag
cgcggccaccgtgtgctcatcttctcccagatggtccggatgctggacatccttgcagac
tacctgaagagccgccagttcttattccagaggttggatggttccatcaagggtgagatg
agaaaacaggcgttggatcatttcaatgcagaagggtctgaggacttctgtttcctgttg
tccacacgagcaggtggcctgggcattaacttggcttctgctgataccgtggtcatattt
gactcagactggaacccccagaatgacctgcaggctcaggcaagagctcacaggataggg
cagaagagacaggtaaatatttatcgtttggtgactaaggggtctgtggaagaagacatc
attgagcgagccaagaagaagatggtgctggaccaccttgttattcagaggatggacact
acagggaaaacagttcttcatactggtgctgctccttccagcagttccactcctttcaac
aaagaggaactgtctgcgattttaaagtttggtgctgaagaactttttaaggagccagag
ggagaagaacaagagccccaggagatggatattgatgagattctgaagagagcggagacc
agagaaaatgatcccggtccatctaccgtaggagaagagcttctctcacagttcaaggtg
gcaaacttcaccatgatggaggaggaagatatggacatggattcagatggcaaccggaag
acctgggattcaatcattcctgaagagcagcggaggagactggaggaagaggagaggcag
aaggagctagcagagatctatatgctgccccgcatgaggaactgtgccaaacagataagc
tttaatggtaacgagggcaggcggagccggaacagaagatattctggctctgacagtgac
tctgcctcagaccgaaagaggcccaagaagcgaggcagaccacgaactattcctcgagag
aacatcaagggcttcagtgacgctgaaatacgaaggttcatcaaaagttacaagaagttt
ggcggccctttggaaaggctggatgctattgcccgggatgctgagctggtggataaatcg
gagcatgacctgaggcggctagcagagacggtacacaatggctgtctgaaaaccctgagg
gaaaatccatgtggaccagaaaaaacctcaggaggcaggcgagggaaggtgaagggacct
accttcaggatctcaggtgttcaggtcaatgctaagctagtaatctcgcatgaggaggaa
ctggcccccttgcacaaagccattcctgctgacccagaggagaggaagaggtatatgctt
ccttgccatgcaaaggcagcacattttgacattgaatggggaaaagacgatgactccagc
cttcttattggtatttatgagtatggctatgggagctgggagatgattaagatggaccca
gaccttaacctcacccacaagcttttaccagacgaccctgataagaagccacaggccaaa
cagctccagacacgcgctgactacctcatcaaattactcagcaaggacctcgccaaaaag
gaggcccagaggcaaacgggcatggctaattctcgaaagaggaagccacgtggaaagaag
aacaaaactgtgaaaccgaaagtggacgaaatggtcaacagtctgtcatctgctcctccc
tcagagaagagctcagaagatgaggactacaaggaagatgaaaaggactccccacccgcc
aagccaacaccaccaaacagaaggggacgagcttctgatcgggtgataaaggaagaagag
gaggaggaggaggaggaggaggaggaagaagaggaggaggaaccagagcccgaacccact
gtcaaagagccagaggagaaggagataaaagagagagagataaagaaagatatcaaacag
gataagaaagaggaaggtcgggacatcaaagtgaaaaaggaacccaaagagaaaaaggag
agcaagcctgtggagtacagagtagaggagtctttcatagagaagtctccggaaataaaa
gttgaagttcgggaaaagagcaaaaaggcagacacgcctgtccatatcactgctggagga
gagaacgttccagtctccgaggaatctgaggagctcgaccagaagaccttcagcgtgtgt
aaggagcgcatgcggccggtgaaggcagccttaaaacagctggatcgtcctgagaaaggt
ctttctgagcgtgagcagctagagcatactcgtcagtgcctaatcaaaattggtgaccac
atcaccgactgtctaaaagagtacaccaaccttgaacacatcaagcagtggagaagaaat
ctttggatatttgtttccaaatttacggagtttgatgcaaggaaacttcataaactgtat
aagcatgcaatcaagaaaagacaggaaaacgctcaggcagcggaccaaaacactagcact
gtaaatacacaagcctttagacacacagacattgagaggttaaaggactctcagcaagac
gagagcagtagagacagctacagttcagaccgacaccactcgacctcacgcagccacgag
cagagcaaagagcgccactccggtgactcgtacaggaaaagctcggactccaggaagaga
ccgtactcctccttcagcaatggcaaagaccacagagagcgagaccactacagagagcgc
caggacagcagatattacagcgacagcaagcataggaagctagatgatcaccgttctagt
cgagacaactggtcagacggcaacaataaggagcgtgtacactcggagcaccgttccctc
tcggagcaccgctccagctcggactacagtcaccacaaggcctctcgtgactatcgctat
cactcagactggcaattggagcagcgcgcttcgggtagtgggccacgttctcctcgagac
cagagatcgccctatgactcccgatcgcccatgggccaccggtcgccttttgagtactct
tctgagcacaagagcacgcctgagcaggtctggagcagtcgtaagacatag
DBGET
integrated database retrieval system
