Ictalurus furcatus (blue catfish): 128625135
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Entry
128625135 CDS
T09387
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ifu
Ictalurus furcatus (blue catfish)
Pathway
ifu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ifu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
128625135 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ifu03021
]
128625135 (smarcd1)
03036 Chromosome and associated proteins [BR:
ifu03036
]
128625135 (smarcd1)
Transcription machinery [BR:
ifu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
128625135 (smarcd1)
Chromosome and associated proteins [BR:
ifu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
128625135 (smarcd1)
PBAF complex
128625135 (smarcd1)
GBAF(ncBAF) complex
128625135 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
128625135
NCBI-ProteinID:
XP_053509211
LinkDB
All DBs
Position
21:5034882..5056475
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AA seq
519 aa
AA seq
DB search
MAARGGFQQAASGGGGGGGGGGMGPGPPVPGGGGPGMAPGTPAGRMGPAGPQNPMYRSPI
PGPGYPRPGMPPANRMTPQGPPMGPPGYGASPVPRPGMPVMDPSRKRPAPPQIPQQVQQQ
QNRNQHAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPI
KQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSF
FKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFK
LDPRLARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSE
IPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQE
IAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEE
RRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtggcggttttcagcaagcggcatctggaggcggcggaggcggcggaggt
ggcgggatgggaccaggacctccggtaccaggtggaggaggaccaggaatggctcctgga
acgcctgcaggaaggatgggacccgcggggccgcagaatccaatgtatcgttctccgata
cctgggcctggatacccgagacctgggatgcccccggcaaaccggatgactcctcaaggc
ccacccatgggtcctccaggctacggcgctagtccagtacctcgccctggaatgccagtc
atggacccgtctcgcaagaggcctgcaccacctcagatcccacagcaggtccaacagcaa
cagaaccgcaaccaacatgccaagaagaagaagatggctgataaaattctacctcagaga
atcagagagctagtcccagagtctcaggcttacatggatctgctggccttcgagaggaag
ctggatcaaaccatcatgcgcaagagactcgatatccaggaggcactgaagagacccatc
aagcaaaaacgaaagctgcgaatttttatctccaacactttcaaccctgccaagcctgac
gccgaggatggtgagggaaccgtagcatcgtgggagctgcgagtcgaaggccggctgctc
gaggacactgctgtatctaaatacgaggccaccaagcagaagcggaagttttcctctttc
ttcaagtctttagtgattgaactggacaaagacttgtatgggcctgacaatcatttggta
gagtggcacagaacacccactactcaggagactgacggcttccaggtgaaaaggcccgga
gacgtgggagtgcgctgtactgtcctcctcatgctcgactaccagcctcctcagtttaag
ctggaccccagactggctcgcatgctgggcatccatacccagaccagaccagtcatcatc
caggctctgtggcagtacgtgaagacgcacaaactgcaggacccacatgagcgcgagttc
atcaactgcgacaaatacctccagcagatctttgagactcagaggatgaaattttctgag
attccgcagcggctgcatgctctgctgatgcctcccgaaccgatcatcattaaccatgtc
ataagcgtggacccgaatgaccagaagaagacggcctgttatgatattgacgttgaagtg
gatgataccctcaagacccagatgaactcttttctgctgtccactgccagtcagcaggag
attgcaggcttggataacaagattcacgagaccattgagaccatcaatcagctgaagact
cagagggagttcatgctgagctttgcccgtgatcctcagggctttatcaatgactggctg
cagtcccagtgcagggacctcaagaccatgaccgacgtggtaggaaaccccgaagaagag
agaagagccgagttttatttccagccctgggctcaagaggctgtatgtcgctacttctac
tccaaggtccagcagaggagacaggagctggagcaagcactgggcatcaggaatacataa
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