Ipomoea nil (Japanese morning glory): 109181869
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Entry
109181869 CDS
T04663
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
ini
Ipomoea nil (Japanese morning glory)
Pathway
ini03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ini00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109181869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ini03041
]
109181869
Enzymes [BR:
ini01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109181869
Spliceosome [BR:
ini03041
]
Complex A
U2 snRNP components
U2 related factors
109181869
Complex B
109181869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
FeoA
Motif
Other DBs
NCBI-GeneID:
109181869
NCBI-ProteinID:
XP_019187356
LinkDB
All DBs
Position
Un
AA seq
1172 aa
AA seq
DB search
MEEPKQKSSKREDSEKEVEEPRRRSHRDRDEHRDRDKEKNGERHRERDREHYRDKKDRHD
REKSTDDKYRERNRDREKEKHKDRHKEKEREKSSRDKVSKDREKDRSDRESAREKEDRER
EREKEKEKEKDREREKEKERDRDREKEKEREREREKEREKEKERDKERERRERDRREKDK
EEKERSREKRGREKERRRDYSSDDDDDDVDVRDRERKRRKRENDHKSRDHERSKKPIKLR
DDSEDGSPLRRSDEESSEKKQKNLEEEQAEEQRKLEEEMEKRRRRVQEWQELRRKKEESE
REKLGVAAITDEPKSGKTWTLEGESDDEDAALEEKQGMDMDMDMDVDVDGLAKPLDVDGV
GSVSSNDVPDLKISQNGGNDASMDDDEIDPLDAFMNSMVLPEVEKLKNAEAPSEDIKSGL
KDNTVIYNEEKPKKRVKKAMGRIIPGEDSDSDYGEVENDEDPLEDEDDEEFMKRVKKTKA
EKLSIVDHSKIDYPSFRKNFYIEVREISRMTPEEVAAYRKQLELKIHGKDVPKPVKTWHQ
TGLSTKILDTIKKLNYEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKD
QPPLVPGDGPIGLVMAPTRELVQQIHSDIRKFSKVMGLSCVPVYGGSGVAQQISELKRGA
EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNTRPDRQT
VLFSATFPRQVETLARKVLNKPVEVQVGGRSVVNKDIAQLVEVRPESERFLRLLEILGEW
YEKGKILIFVHTQEKCDALFKELLKHGYPCLSLHGAKDQTDRESTIMDFKSNVCNLLIAT
SIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVK
ALELSEQVVPDDLKAIADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAK
EYGFEEDKSDSEDEDEGIRKAGADVSQQVAALAQAAALAAATKANVAQLPGSGQFPQLPP
HGGVPGPLANILPGNGMLMAPNDMSATAAAFLAAKNLQQNLARLQNEVMPEHYEAELEIN
DFPQNARWKVTHKETLGPISEWTGAAITTRGYYIPPGKVPGPGERKLYLFIEGPTEQSVK
RAKAELKRVLEDIAMQATSLPGSAQPGRYSVV
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaccaaagcagaagtcttctaagagggaggactctgaaaaggaagtagaagag
ccaaggaggaggagccaccgtgacagagatgagcaccgagaccgtgataaggagaagaat
ggagagaggcacagggaaagagacagggaacactaccgtgacaagaaagaccgccatgat
agggagaagagtactgatgataagtatagggagagaaatagagatagggaaaaggaaaaa
cacaaggataggcataaagagaaagagagggaaaagagcagcagagataaggtctctaaa
gacagagaaaaggataggtctgacagagagagtgctagggagaaggaagacagagagagg
gagagagagaaagagaaggagaaggagaaggatcgcgaaagagagaaagagaaggagagg
gatcgagaccgagagaaagagaaggagagggaacgtgaaagagaaaaggagagagagaaa
gaaaaggagagggataaggaaagggagagaagagagagagataggagggaaaaagataag
gaggagaaggaaaggagtagggagaagaggggtcgtgagaaagagcgcaggcgtgattat
agcagtgatgatgatgatgatgatgttgatgtaagagatcgtgaaagaaagaggcgaaag
agagagaatgatcacaagagcagggatcatgagcgaagcaagaaacctattaagctcaga
gatgacagtgaagatggtagcccactgagaagaagtgatgaagaatcatcagaaaagaaa
cagaagaatctagaagaagaacaagctgaggaacaaaggaaactggaagaagagatggag
aagcgaagaaggagagttcaggaatggcaggagttgagaagaaagaaggaggagtcagag
agagaaaagcttggagttgcagcaattactgatgaacccaagtcaggcaagacttggact
ttggaaggggaatctgatgatgaagatgctgctcttgaggaaaaacaaggcatggatatg
gatatggatatggatgtggatgtggatggacttgctaagcctttggatgtggatggagtt
ggctctgtaagttccaatgatgtacctgatttaaaaatttcacagaatggtggtaatgat
gcttctatggatgatgatgaaattgatccactggatgcattcatgaattctatggtgttg
cctgaagttgagaagcttaagaatgctgaggctccttctgaagatattaagtctggtttg
aaagataatactgttatttacaatgaagagaagcctaaaaaaagagttaaaaaagctatg
ggaagaatcatacctggtgaagattctgattcagattatggtgaagttgaaaatgatgaa
gatcctttggaggatgaagacgatgaagaatttatgaaacgggtgaagaagaccaaggct
gagaaactatccatagttgaccactcaaaaattgattatccttctttccgaaagaatttt
tatattgaagttagggaaatttcaagaatgactcctgaagaggttgctgcttacagaaag
caattggagttgaagatacacggaaaggatgttccaaagccagttaaaacatggcatcag
actggattgtccactaagattttggacacaataaagaaactgaattatgaaaagccgatg
tcaatccaggctcaggctttgccaataattatgagtggtcgagattgtattggtattgca
aagacgggttctggaaaaactctagcttttgtgttgccaatgttgagacatattaaggat
cagcctccacttgttcctggagatggtcctattgggcttgtaatggcccctacaagagag
cttgtgcagcaaatacatagtgatataagaaagttttcaaaggttatgggccttagttgt
gtgccggtgtatggaggttcaggtgttgctcaacaaattagcgagttgaaacgaggagca
gagattgttgtttgcactccgggtaggatgattgacatactttgtactagtggaggaaaa
attacaaatctgcgaagagtcacttatttggttatggatgaagctgatcggatgtttgat
atgggctttgaacctcagatcactagaattgttcaaaatacacgtccggaccgccaaact
gtactgttttccgccacttttcctcgccaggttgagacattggcacgcaaagtgttgaac
aaacctgttgaagttcaggtaggtggaaggagtgttgtgaacaaagatattgcccaatta
gttgaggtgaggccagagagtgaaaggttccttagattattggaaatacttggagaatgg
tatgaaaaggggaaaattttgatatttgtccatacacaggagaaatgtgatgctttattt
aaggaattgctaaagcatggttatccttgcctctcacttcacggggcaaaagatcagact
gatcgtgagtccaccattatggattttaaaagtaatgtatgtaacttgttgattgcaacc
agtattgctgctagaggtttagatgtaaaggaacttgagctggtgatcaactttgatgtt
ccaaaccattatgaggactatgttcatcgtgttggacgaactgggcgagctggtagaaaa
ggctgtgctatcacttttatatctgaggaggatgcaagatatgcacctgatcttgtaaaa
gctttggaactgtctgaacaagttgttcctgatgacctgaaagcaattgctgatagtttc
atggcaaaagttaatcagggacttgaacaagctcatggaactggttatggaggtagtggc
tttaagtttaacgaagaggaagatgaagtgaggagagctgcaaagaaagcccaagcaaaa
gaatatggttttgaggaagacaaatcagattcagaggatgaagatgaaggaataagaaaa
gcaggtgctgacgtctctcagcaggtggctgcccttgctcaggcagctgctcttgctgct
gctaccaaagcaaatgtcgctcaacttccaggttcaggccaatttcctcagctaccacct
catggtggagtacctggtcctcttgccaatattcttccaggaaatggaatgctaatggcc
cctaatgatatgtcagctactgcagcagcatttcttgctgccaagaatttgcagcagaac
ttggctaggcttcagaatgaggtcatgcctgagcattatgaagcagaattggaaataaat
gattttccccaaaatgctcgttggaaggtgacacacaaagagacactaggtcctatttca
gaatggactggagctgccatcactactaggggctattatatcccacctggaaaggtacct
ggaccaggggaaagaaaattatacttgttcattgagggtcctacagaacaatctgtcaag
agggcaaaagctgagctaaaacgcgttttggaggacatagcaatgcaagcaacctcactt
ccgggttcagcccagccaggacgatactcggttgtttaa
DBGET
integrated database retrieval system
