Ictalurus punctatus (channel catfish): 108255883
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Entry
108255883 CDS
T04658
Name
(RefSeq) snRNA-activating protein complex subunit 4 isoform X1
KO
K09453
snRNA-activating protein complex subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108255883
03021 Transcription machinery [BR:
ipu03021
]
108255883
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
108255883
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
108255883
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
SLIDE
Motif
Other DBs
NCBI-GeneID:
108255883
NCBI-ProteinID:
XP_017307712
Ensembl:
ENSIPUG00000018664
UniProt:
A0A2D0PNY5
LinkDB
All DBs
Position
22:6985729..6999661
Genome browser
AA seq
1641 aa
AA seq
DB search
MAFSEDLLAQRNKLQHEILALENTLGNDGNIADLLSSGSDSAEESDDSGHAGEDVAHKDL
EAERQQVQREIEELERKLGADAALVDALTDSENGRLSDSSGEDSEDLDLPQDIETCLQMN
LVYQEVLKEKLADLERLLNENREQQKELEEQVSGPAYINPGLPHLKLYLGSFMKPYFKDK
LTGLGPPANEETKERLSHGTKPCDEMKIRRWEPWQKTLLMNSVAADAMKRMLQPKLSKME
YLTTKMCKAEGAEKEELQKQIALLEKDITEIRSMKDDQLYGDRHDDHDWDKISNIDFEGI
RQPDDLMRFWQNYLHPSIDKSTWNQDEIAKLAEVAQEHMYRHWEQIAESLGTGRTAFMCF
QVYQRYISKQFRKREWTEEEDQVFRELVDKMRIGNFIPYTQISYFIEGRDSSQLNYRWTC
VLDPSIKKGPWTKEEDQLLLNAVKKYGCKEWWKIRQEVPGRTDNYCRDRYLDCLRTDVKK
GAWSDEEVELLKKLVEKYGVGKWAKIASEIPNRLDSQCLNKWRYMMHMAHKESVKRERTR
SVKLEPQLKRRRVSQVKRRKLKEEYDFKTESDTSEDEKERVPYMDSDGENKVENEVENFS
STEDCRLEYVQPDIKEWIPARGNKLVYSPGNLKTILVRVPTEAEESAGGCVRNTVLDNLG
NPVKTYVGMEPPVLQESNSNNEHAMIMVSECDVKRFLNCRRAYVLKVKARKTKTSLPSST
NQNDAKNDEEEDKTETESDRRKCKPVHKRVPTTKLSYDLMLAITPWIGNVMMPLSFIQRR
ACEADVVRKRAADIPLLKSPVFLLFLQALKVDADGCKKVIEARKDKASSAPGSQLKPYPA
KKPTPGSYYHVKTVSDILAERTAQKKLSRPLQSPEFLEPQLLPQPAKIAQRPQQQSKTKQ
VMQSASQEINATMILPQTFVVAQSNTDNKVATSHNVVQRILPLLQLGTQEASKSPQPVQH
LEVPKESERVTETASCPTTSVSTTGPPTETLEGVHAPKRKHKPTLKAQALMDNASAKKQE
RNRKLKKQAAKKQQNAATTENNITQTVAVPPNTTAWILTPAGLMPVAGIQVQSPDIPGNH
YQVMQNKVQMLFHPPVIVNQSSCVALNNAVKPINPKADLPGNNNISLTAGSNLGQNPRPS
SVSDNNIDSSLPSSPQVLPETNVPTSITGSTAHVPPSKTPWNQKKPVTQMNPMSSPVPVS
SSPVGTNKNRTPSCISDATNNVPNVSSVSAVTSTPSIPSVDPLNSSGPGTIPGSQSQRMP
HPVSQVLFQHPIIVNQNGSLALINPTGPCLITNAPPTATANVTMVPTNSIAPNVNNNLPT
SSNEGSLAVNVAEPCLNTNSPPIATANVSRVPPNSAAPNINKSHPTSTEGCISPAYSIIS
TSAPSSALNETSHATPQFGFVNSPVTVNVGGLPTNLLCVNTHISSMTTSCQKLPQTVVAQ
KAPQAKRQTVQRSATTSNPRPKKITFDPSLMFFEQPDQVKNWLKGNDGITLPGLKDKLPY
LPPFVTSINTLNTLLKGRDSLLKSAVQLLPEEHEDNTEEEAKIAAVRKMVSERFKTNQAY
LLLKARFLSCFTLPALLATINPCIELTDALDPEDGMGKVKPKQFGDDQFEPLGSLLKESE
LTATQFPGSKPRNQTDSHKNA
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcagaagacctgttggctcagaggaacaaattacagcatgagattttggct
ctggagaacactctgggcaatgacggtaacattgcagacctgctatcttcaggcagtgac
agcgctgaggagtctgatgacagcggacacgcaggggaggatgttgcacacaaggacctg
gaagcagagcggcagcaagtacagagggagatagaagagttagagcgaaagctcggtgca
gacgctgctctggttgatgccctgacagacagtgaaaatggccggctatcagattctagc
ggtgaggacagtgaagatttggatcttcctcaagatatagaaacgtgtcttcagatgaat
ttggtttatcaggaggtgctgaaagaaaaactagctgacttggagaggcttcttaacgaa
aatcgtgaacagcagaaagagcttgaagagcaggtctctggtcctgcatatatcaatcct
ggcctccctcatctcaaactctaccttggcagctttatgaaaccatatttcaaagacaag
ctgactggtttgggccctccagccaatgaagaaaccaaagagaggttgagtcatgggacc
aaaccctgtgatgaaatgaaaattagaagatgggagccatggcaaaaaacgttgctgatg
aactccgtagccgcagacgctatgaaacgcatgttgcagcccaaactgtcaaagatggag
tacttaactacaaagatgtgtaaagcagaaggtgctgaaaaagaagaactacaaaaacaa
attgctcttttagagaaggacatcaccgaaataaggtccatgaaagatgatcagctgtat
ggggatcgccatgatgaccatgattgggacaaaatatcaaatatcgattttgagggcatt
cggcaacctgatgatctgatgaggttctggcagaattacttgcatccctccattgacaaa
tcgacgtggaatcaggatgagattgcgaagcttgcagaggttgcgcaagagcacatgtat
cgccactgggaacaaattgcagaatctcttgggaccggcaggaccgctttcatgtgtttc
caggtatatcagcgctacatctcgaaacagttcaggaagagagagtggactgaagaggaa
gaccaggtcttcagagagcttgtggacaagatgaggattggcaacttcataccatatact
caaatatcgtactttatagaaggtcgggatagttcccagctgaactaccgctggacgtgt
gttctggacccctcgataaagaagggaccttggacaaaagaggaggaccagttactgctg
aacgctgtgaaaaagtatggctgcaaggagtggtggaaaattagacaggaagtacctgga
aggacagacaattactgcagagacagatatctggattgcctccgaactgatgtaaagaaa
ggtgcatggagtgatgaagaagtggaactgctgaaaaaactggtagagaaatatggtgtt
ggtaaatgggctaagatcgcctctgaaattccaaatcggcttgacagccagtgtttgaac
aagtggagatatatgatgcacatggctcataaagaaagtgtaaagagagaaagaaccaga
tcagtaaaacttgagccacagttgaagaggaggcgagtgagtcaggtaaagcgccggaaa
ttaaaagaagaatatgattttaaaactgaaagcgacacctccgaagatgaaaaggagcga
gtgccgtacatggacagcgacggcgaaaacaaagtagaaaatgaagtagaaaatttctct
tcaactgaggattgtagactagagtacgtccagccagacataaaggagtggattcctgca
cgtgggaacaagctggtgtattctccaggcaacctgaagaccatactggtaagggtgccc
actgaggctgaagagagtgccggaggttgtgtacggaacaccgtgctggacaatctgggg
aatcctgtaaagacttatgttggtatggaaccacctgttttacaagaatcgaattcaaac
aatgagcatgccatgatcatggtgtccgaatgtgatgttaaacgcttcctgaattgcagg
agagcatatgtcttgaaagtgaaagcacgaaaaactaaaaccagcttgccttcaagtaca
aatcagaacgacgccaaaaatgatgaagaggaggataagactgaaacggaaagcgatcgg
agaaaatgtaaacctgtccacaaacgtgttcccaccaccaaactgagctacgatctcatg
ttagccattactccatggatcggcaatgtgatgatgcctttatctttcattcaaaggcgt
gcttgtgaagctgacgttgttcgaaaaagagcagcagatatccctcttctaaaatcacct
gtgtttttgctttttctgcaggctcttaaagttgatgctgatggttgcaagaaagtcatc
gaggcccgcaaagacaaagcgtcctcggcaccaggatctcaattgaaaccctatccagcc
aagaagcctactccaggttcctactatcatgttaagaccgtatcagacatacttgctgaa
agaacagcgcagaagaaactttctaggcccctgcagtcccctgagtttttagaaccccag
ctacttccacagccagccaaaattgctcaaaggcctcagcagcaaagtaaaacaaaacag
gtcatgcagtctgctagtcaggagataaatgctaccatgatacttccccagacttttgtt
gttgcccagtcaaatacagataacaaagtagccacttcacataatgtggtacagagaatt
ttacctcttctgcagttgggtacacaagaagcatcgaaaagtcctcagccagtacaacat
ttggaggtaccaaaagaatctgagagggtgacagagaccgcatcctgtcccacaacctca
gtgtccacaactggaccacctacagagactttagagggagtgcacgctccaaaacgcaag
cacaaacccacactgaaagctcaagccttgatggacaatgcaagcgccaagaaacaggaa
agaaacaggaagctaaagaaacaggcagctaaaaaacaacaaaacgcagcaacaacagaa
aacaacataacccagacagtggctgtaccaccaaatactacagcctggattctcacccct
gctggtttaatgcctgttgctggaattcaggtacaatctcctgacatccctggtaatcac
taccaggtgatgcaaaacaaagttcagatgctatttcatccacccgtcatagtcaaccag
agtagttgtgttgcactcaacaatgccgtgaagccaatcaatccaaaagctgatttacct
ggaaataataatatatctctgactgctggatcaaatcttggtcaaaaccctagaccttct
tctgtctcagacaacaacattgattcttcacttccttcttctcctcaagttctacctgag
acaaatgtgccaacatccattacaggatccacagcccacgttcccccgtctaaaactcca
tggaatcaaaagaaacctgtaactcaaatgaatcccatgtcatctccggttcctgtttca
tcctcccctgtgggaactaataaaaaccgtacaccatcgtgtatttcagatgcaactaac
aatgttcccaatgtctcttcagtgtctgctgtcacaagtacaccttctatcccttctgtc
gatccgttgaacagttctggtcctggtactattccaggttctcaaagccaaagaatgcca
catcctgtttctcaggtgctatttcagcacccaatcatagtaaaccaaaatggctctttg
gcactcatcaaccccacaggaccctgcctaattacaaatgctccaccaactgctacagca
aatgttactatggttccaactaactctatagcacctaatgtaaataacaacctaccaaca
tcttctaatgagggttctttggcagtcaatgtcgcagaaccctgtctaaatacaaattcc
cctccaattgctactgcaaatgtatctagggttccacctaactctgcagcacctaatatt
aataagagccatccaacatctacagagggctgtatatctccagcctattctataatctcc
acctctgcaccctcttctgctttgaatgaaacatcacacgcaactccacagttcggtttt
gtgaacagtcctgttacagtcaacgtaggtggccttccaacaaatctgttgtgtgttaac
acgcacatcagttctatgaccactagttgtcaaaaattgcctcaaactgtggtggcgcag
aaggccccccaagccaaacggcaaactgttcagagatcagctaccacatctaatcccaga
cccaaaaaaattacttttgaccctagcttgatgttcttcgagcaaccagatcaagtgaaa
aactggttaaaggggaatgatggaattacactgcctggtctgaaagacaaattgccttat
cttcctccatttgttaccagtatcaatacactgaacactttgctcaaaggaagagattct
ttgttgaagtcagcagtgcagctcctgcctgaagaacatgaagacaacaccgaggaagaa
gctaagatagctgctgtccgtaaaatggtgtctgagaggtttaaaaccaaccaagcgtat
ttgcttctgaaggctcgcttcttgtcatgctttaccttacctgcccttttggccactata
aatccatgcatagagttgacagatgccctggatccggaagacggtatgggcaaagtcaag
ccaaaacagtttggagatgatcagttcgaaccattggggtctcttctgaaagaaagtgaa
ttaacagcaacacagtttcctgggagtaagccaagaaatcaaacggacagtcataaaaat
gcttag
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integrated database retrieval system
