Ictalurus punctatus (channel catfish): 108256743
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Entry
108256743 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase RNF6
KO
K22753
E3 ubiquitin-protein ligase RNF6 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108256743
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108256743
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108256743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_11
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
zf-RING_UBOX
zf-RING_4
zf-RING-like
zf-P11
zf-RING_16
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
108256743
NCBI-ProteinID:
XP_017309399
Ensembl:
ENSIPUG00000010428
UniProt:
A0A2D0PTP0
LinkDB
All DBs
Position
23:complement(5025786..5031934)
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AA seq
683 aa
AA seq
DB search
MDPPGGRDERRRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQRLD
GAKERVSSQPRPESRPQNSEEGQEGSSAAVEPGTESTNGDSLLEWLNTFRRTGNATRSGQ
SGNQTWRAVSRTNPNSGEFRFSLEININHEQPEPGEHSDTSDPIELPVPQRASASIRTPL
RPTPYSTQHPTPYSTTRPTLGRRAQARRTRSSTTPPITPPLISQAPYTSLRRNLALPQPA
ALPPPPPPPSQAMPTSLPQEQDSTNSVQGQVQTQPPSLSNEEEQEVNDVPDCPEAVSQAS
VQGAAASREARRTRSRGRVRRIAVSRSSRRSRSPLDRNSARSSSPTPGNSAPAIEPAGNT
AAAAAAAAALVETVEVPAEPTVPVESAPEAGTEEGETPASGTAGGVRRHPTIMLDLQVRR
IRPGENRDRDSIASRTRSRARAAENTVTFESDSGGFRRTISRSERAGIRTYVSTIRIPLR
RISETGLGEPSSTALRSILRQIMTGFGELSSLMETEADPESSAPGQNVGVNAAAQTQRAQ
DGEATTGNAVTDSGREGGAAGEAGQARVGANGRDTNNLVENGTLPILRLAHFFLLNDEED
DEHPRGLTKEQIDNLATRTYGQASLEGEQGRACSVCINEYAQGNKLRSLPCAHEFHIHCI
DRWLSENNTCPICRQPILSSHQD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaccctcccggcgggcgagacgagcgtcgccgtcaggccgagcgtcttcggcgggag
gaggcgtactaccacttcatcaacgagctgagcgaggaggagtatcggctcatgagagac
agcaacctgctgggtacaccaggtgaagtcacagccgaggagctgagacagcgtctggat
ggagcaaaggagcgcgtgtcctcacagcctcgccctgaatcacgtccacagaacagtgag
gaaggacaggagggcagcagtgctgctgttgagccgggcaccgagagcacgaacggagac
tctctgctggagtggctgaacacgttccggcgcacaggcaacgccacccgcagcggccag
agcggcaaccagacgtggcgtgccgtcagccgcacgaatccaaacagtggcgagtttcgc
ttcagcctggaaatcaacatcaatcacgagcagcccgagccgggggaacacagcgacact
tctgaccccattgaacttcctgtcccgcagagggcctctgcgtctatacgcactcccctg
aggcccacgccctattccactcagcaccccaccccttattctacaaccaggcccactctg
gggaggcgggctcaggcacggcgcactcgcagtagtactaccccacccataaccccacct
ctgatctcgcaggcgccgtatacgagtttgaggaggaaccttgctttgcctcagccagca
gcgcttcctcctcctcctccccctccttcacaggccatgcccacgtccctgcctcaagag
caggatagtaccaacagcgtgcagggtcaagtacagacgcagcctccttcacttagtaac
gaggaggagcaggaagttaacgacgttccggactgtccagaagctgtgtctcaggccagc
gtgcagggggcggcggctagccgtgaggcacgcagaactcgttcacgtggtcgggtccgc
cggatagctgtgtcccggtcctcgcgtcgtagccgctcacctctggatagaaactccgcc
cgaagctctagtcccacccccggcaacagtgcccctgcaatagagcctgctggaaacacg
gctgctgctgctgctgctgctgctgctctagtggagacggtggaagttcccgctgagccg
acagtaccagttgaatctgcccccgaagcgggcactgaggaaggcgagacgccagcgtca
ggcacggcaggaggtgtccgccggcacccgactatcatgttggatttgcaggtgcgcaga
atccggccgggcgagaaccgagaccgggacagcattgccagccgcacgcggtctcgtgcc
cgcgccgctgaaaatacggtcactttcgagagcgacagcggaggcttcagacggaccatc
tcgcgctcggaacgcgctggcatccgcacctacgtaagcactatccgcattcctctgcgc
cgcatctcggagacgggtttgggcgagccgagttccacagcgctacgctccatcctgcga
cagatcatgaccggcttcggagagctcagctctttaatggagaccgaggcagacccggaa
agctccgcccctggacagaacgtgggtgtcaacgctgcggctcagacacagcgagcgcag
gatggtgaagccacaacagggaacgctgtgaccgattcgggacgagagggtggagcagcg
ggcgaggcaggccaggcgagggtgggtgccaacgggcgggacacgaataacctggttgag
aacggcaccttgcccatcctgcggctggcgcacttcttcttgctgaacgacgaggaggac
gacgagcacccgcgcggcctcaccaaagagcagatcgacaatctggccacgcgcacctac
ggccaggcgagcctggagggcgagcaggggcgcgcgtgcagtgtatgcatcaacgagtat
gcgcagggcaacaagctgcgcagcctcccctgtgcacacgagttccatatccactgcatc
gaccgctggctctcggagaacaacacgtgccccatctgtaggcagcccattctgtccagc
catcaggactga
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