Ictalurus punctatus (channel catfish): 108257822
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Entry
108257822 CDS
T04658
Symbol
rxrgb
Name
(RefSeq) retinoic acid receptor RXR-gamma-B isoform X1
KO
K08526
retinoid X receptor gamma
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03320
PPAR signaling pathway
ipu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
108257822 (rxrgb)
03320 PPAR signaling pathway
108257822 (rxrgb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108257822 (rxrgb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108257822 (rxrgb)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108257822 (rxrgb)
Nuclear receptors [BR:
ipu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
108257822 (rxrgb)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
DUF692
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
108257822
NCBI-ProteinID:
XP_017311378
Ensembl:
ENSIPUG00000023971
UniProt:
A0A2D0PY04
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Position
25:94995..118587
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AA seq
453 aa
AA seq
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MDNSDTYLHLNSPGALNSSLSQPPPMSSMMGHSSVISTSRPLPSAMGYSVITSSMSSPSA
SLPSTPAMDFGALNSPQMNSLSSVSSSEDVKPPPGLLPLANINSYQCTSPGSMSKHICAI
CGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLA
MGMKREGLCLCASWLTVAVQEERQRGKEKSDNEVESTSSFNEDMPVEKILDAELAVEPKT
ETHTDDSPGNSTNDPVTNICQAADKQLFTLVEWAKRIPHFSDLPLDDQVILLRAGWNELL
IASFSHRSVTVKDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKDMQMDKTELGC
LRAIVLFNPDAKGLSNPADVEALREKVYASLESYTKQKYPNQPGRFAKLLLRLPALRSIG
LKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQIT
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atggacaacagtgacacgtatttacatctcaactcacctggggcacttaactcctccctc
tcacagcctccaccaatgagctccatgatgggtcactcgtctgtcatcagcacctcacgt
cccctcccttcggctatggggtactcggtcatcacttcctctatgagctcgccctctgcc
tcactaccctccactcctgccatggactttggcgccctcaatagcccacagatgaactct
ctgagcagtgtgagcagctcagaagatgtgaagcctcctcctggtctgctgcccctggcc
aatatcaacagctaccagtgcaccagtcctggatccatgtccaaacacatctgcgccatc
tgtggtgatcgctcctcaggaaaacactatggtgtgtacagctgtgaggggtgcaaaggt
ttcttcaagaggaccatccggaaagacctgacctacacgtgtcgagacagcaaggagtgt
ctgattgataaacgccagcgcaatcgctgccaatactgccgctaccagaagtgtctggcc
atgggcatgaagagggaaggactgtgtttatgtgcctcctggctcactgtagcggttcag
gaagagaggcagcgtgggaaggagaagagcgataatgaggtggagtcgaccagcagtttt
aatgaagacatgcctgtagagaagatcctggatgccgagctcgcagtggagcccaagact
gaaacgcacacagatgacagtccaggaaactctacaaatgacccagtcactaacatctgc
caagcagcagataagcagctcttcacactggttgaatgggctaaaaggataccgcacttc
tcagaccttcccctggatgatcaggtcattttgcttcgggcaggctggaacgagctgctc
atcgcctcgttctcgcatcgctcagtcacggtaaaagatggcattctgctggccacaggt
ctccatgtgcaccggagcagcgcacacagtgccggagtgggttctatttttgacagagtg
ttgactgagctggtgtctaagatgaaggacatgcagatggataagacggagctaggatgc
ctcagagccatcgttctttttaacccagatgctaaaggcctgtctaacccggctgatgtg
gaggcgcttagagaaaaagtctacgcctcgttggagtcctacaccaagcagaaatacccc
aaccagcccggcaggtttgctaagctcttactacgtctacccgctctgcgttcgattgga
ctgaagtgtctcgagcatctcttcttcttcaagctgatcggagacacgcccatagacaca
ttcctaatggagatgctggaagcaccccatcagataacatga
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