Ictalurus punctatus (channel catfish): 108259088
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Entry
108259088 CDS
T04658
Symbol
col17a1a
Name
(RefSeq) collagen, type XVII, alpha 1a isoform X1
KO
K07603
collagen type XVII alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108259088
NCBI-ProteinID:
XP_047007270
UniProt:
A0A2D0Q637
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All DBs
Position
26:complement(10634567..10661403)
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AA seq
1510 aa
AA seq
DB search
MDNLITTKIVNAEGVSGVSGKVTESVTTTTRLTSLPPKGSSSVSTQRVLTSTSSSSSGSS
SAVERRIITQSIGGGGGGGGSSSNVISLGGSSSSAVQVVTGGVSGGSSVTSSSLGTSSSG
AAGGLGASGITSSIIAVGDSSGGGSGSASTFESRSSSQFLSSSSGDLGSRSVGTMNLSGG
GAYSSTMSSGGGVSSTVISMGGGSTKYTSSATTSAMKNASYSPVTQRRSSLTLRTAGYEG
SSSGNSSPEYTRKEYAAAAASAATRGRTQTRESEIRARLQSASPSTRWTELDDVKKLLKG
SRSSSSSPPRSPTNTLPIPKKASVDTRIESHSGYDSSILESAYSGYGYHTNPNNLSPHST
LQHNVGLQNNLTLNSSAMSSGLSAGHAVYGMQNNLASGGGVAVTANGISVAPVYGVHKNI
VSTTASTTAAAVPSTSVTSDDVFVKDYKFMLLEKENVQAKKESERLIKSKDTGKTFTSTT
STGGLSATFSDDSLKREKKMFSGTTETATVANGVKVVSTKDKATYAEIRKDESGGGGMGF
CSCCTWWKWLLGLLLGLLLLLGLLCGLIALAEEVKSLKARVERLEAGGNTIASAHTSRLS
APSSVNILDPLDSVQYERTHIARTENNIQLGPDSVQPDPATLQRTIKQLVQSELQSESVR
ATLAYSLKGERGEPGLKGDQGAPGIKGDSGFPGVPGPPGSAGHPGQEGTRGPKGSAGEPG
HDGPPGQRGREGPTGPRGEPGPPGVGEKGEKGTSGDPGPPGPAGPPGLMGLRGEVGALGT
AGLPGAPGPQGFRGDPGDPGPKGERGPAGPPGAKGDQGEKGPRGVTGEPGQPGPIGPSGE
KGPKGSAGAPGSDGVKGNRGDQGPTGLPGPRGPAGPPGDAGVPGSPGLQGPPGLPGTPGQ
PGSKGEAGEPGRVVTAGSASNTVGIPGPPGPAGPAGPAGAPGLSGPIGPAGLPGPAGPKG
ERGEKGDDGEPGISAKSVERVRFEPAAGLPGPPGPSGPPGPPGEPGKPGEGKTGLPGSPG
PRGEPGIGLPGPPGDKGEPGRFVPTSETFFAGPPGPPGTPGSPGPQGEPGHPGLPGEPGL
GFPGPVGPSGPPGPEGLPGPQGPPGSKGDAGVPGAPGIPGYSNGAGRSSPGPPGPPGPPG
PPGPYGDASGSPDIAQQLSDLIRSDGIRQYFVGPPGLPGPPGSVSDADLANRVISYIKRE
EVRQYLVGPPGPPGAPGIPGLNPQEVAGRVLNLMNEQGMLTQSGPPGPPGPPGLPGATYS
NLPLLLQNSEYRSLIGLPGPPGPPGSPGIPGPHGPPGPVPFTGTFGLEDIQKYLENVGFK
GPPGPPGPPGPQGSPGITGSLVSYAENAHQEPIRAELQEYLKSGRVFREEPSYSFTKPIE
SLDYPTIAEQVVNYIKSRGLLLRDLKDIQGPPGPPGPPGRPGISHSYSTYNNMTEIFKII
RDHGMVGPPGKPGQKGEIGYTGPRGPRGPRGEQGIPGLPGLPGNDGPRGQKGEKGEDAYI
NHRGKRSTGV
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggacaatttaatcacaaccaagattgtgaatgcagagggagtatcgggtgtttcaggg
aaagttacagagagtgtgaccaccacaaccagactgacatcccttcctccaaagggcagt
agttcagtgagcacacagcgggtgctcacatctacctctagctctagttcaggctctagc
tctgctgtggagaggaggatcatcactcagagcatcggaggaggaggaggaggaggagga
agcagcagtaatgtcatatccttaggtggctcaagtagcagtgcggtgcaagttgtgact
ggtggtgtgagtggtggctcatctgtgacttcatcttctctgggaacatcttcaagtgga
gctgctggaggtttgggggcttctggcataacctcctccatcattgcagtcggagattct
tcaggaggaggcagtggttctgcaagcacttttgagtcccgctcatcttctcagtttctg
tccagctcttctggggacttagggagccgttcagttggtacgatgaatctgtcagggggt
ggggcttactcatcaaccatgtcttctggaggaggagtttcatctactgttatatcaatg
ggaggtggctctacaaaatacacctcctctgccacaacaagtgccatgaagaatgctagc
tactcaccggtcacacagaggagaagcagcctgaccctgcgcactgcaggatatgaagga
agctccagtggcaactcctcccctgaatatactaggaaagagtatgcagcagcagcagca
agtgcagccaccagaggacgcacccagacaagagagagtgaaatcagagccagactgcag
agtgcctctccatccactagatggactgagctggatgatgtgaagaaacttcttaaagga
agtcgctccagtagcagcagtcctccacgctctcccaccaatacactacccatacctaaa
aaagcaagtgtggacacacgcatagagagccactcaggttatgacagctctatcctggag
tctgcatatagtggatatggctatcacaccaaccccaacaaccttagcccccactccaca
ctacagcacaatgtgggcctgcagaacaacctgaccttgaactcctcagccatgagcagt
ggcctttctgctggacatgcagtgtatgggatgcagaataatttggccagtggtggcggt
gtggcagttactgcaaatgggatcagtgttgctccagtatatggagtgcataagaacatt
gttagcactacagcttccacaactgctgcagctgtccccagcacctctgtcaccagtgat
gacgtgtttgttaaggattacaagttcatgctgctggagaaagaaaacgttcaagcgaag
aaagaaagcgagaggctgattaagtcaaaagacacgggcaaaacattcacttccaccact
tccactggtggactatcagccacattttcagatgactcgctgaaaagggaaaaaaagatg
ttctctggaaccacagaaacagccacagtggcaaatggtgtcaaagttgtttctacaaag
gacaaagccacatatgcagagattcggaaagatgaatctggaggaggtgggatgggattc
tgctcctgctgtacgtggtggaaatggctgcttggattgctgttgggactgctcttgctg
ctgggtcttctctgtggactcatcgctctggctgaggaagtaaagagcctaaaggctcgt
gtggaacgtctggaagccggtgggaacaccatagcctctgctcacactagccgcctatca
gcaccatcctcagttaacattttagatccactggattctgtacaatatgaacgcacccac
atagcacgaacagaaaacaatatacaactaggacctgactcagtgcagcctgacccagcc
acactgcagaggaccataaaacaactcgttcagtctgaattacagtcagagagcgtcaga
gctacactggcatattcactgaaaggagagagaggggagcctgggctcaaaggtgatcag
ggagctcctgggattaaaggtgattcaggatttcctggagttccaggtcctcctggttct
gctggtcatccaggacaagaaggtacaagaggacctaaaggaagtgctggtgagccagga
catgatggcccacctggacagagaggccgtgaggggccaacaggacccagaggagaacca
ggccctcctggagttggtgagaaaggagaaaaaggaacatctggagatcctggacctcct
gggcctgcaggaccacctggacttatgggactcagaggtgaagtgggtgctctaggtact
gcgggtcttccaggggctcctggtcctcaaggcttccgaggggatcctggtgatcctgga
ccgaaaggagagagaggacctgcaggacctcctggagctaaaggtgatcaaggggagaaa
gggccccgtggtgttactggagaaccagggcagccaggacctatcggtccatcaggagag
aaaggacccaaaggatcagcaggtgctcctggatcagatggtgtgaagggaaatcgtggg
gaccaaggaccaactgggttgccaggtccacgtggaccagctggacctccaggagacgca
ggcgtgccaggatctccaggccttcaggggccaccaggtttgccaggaacaccgggtcag
cctggatctaaaggtgaagcaggtgaacctggaagagttgtcactgcaggctctgcttcc
aacactgtgggtattcctggaccccctggacctgctggacctgctgggcctgccggagct
cctggactgtcaggtcccattggccctgctggtcttcctggcccagctggacccaaggga
gaaaggggtgaaaagggtgatgatggtgaacctggcatttctgcaaaatctgttgaaaga
gtcaggtttgagcctgctgctggtctacctggtcctcctggcccctctggaccccctgga
ccccctggagaaccagggaaacctggtgagggcaaaactggcctaccaggatccccaggt
ccacgtggagagccaggtattggtctccctggtccacctggtgacaaaggtgaaccagga
cgctttgtacccacctcagaaaccttttttgctggacctcctgggcctcctggaactcct
ggatctcctggacctcaaggcgagccaggtcatcctggactaccaggagaacccggactt
ggttttccagggcctgtaggcccaagtggacccccaggtcctgaaggcttaccaggccct
caaggaccaccaggttcaaaaggtgatgctggtgtcccaggggcccctggcatcccagga
tattctaatggtgcaggcagaagttcacctggaccaccaggtccacctggacctccaggg
cctcctggaccttatggtgatgcctctggctctcctgacattgctcagcagcttagtgac
cttattagaagtgatggcattaggcaatacttcgttggtcctcctgggcttcctggacca
cctggaagtgtatctgatgctgatttggctaatcgtgtaatcagttacatcaaaagagaa
gaggtgaggcagtatctggttggtcctccaggaccacccggagcgccaggtattccaggc
ctcaaccctcaggaagtagctggaagagtcctcaatcttatgaatgagcagggtatgctg
acgcaatccggacccccaggcccacctggccctccaggacttcctggagcaacctacagt
aatctcccacttctcctacaaaactcagagtacagaagtctgattgggctaccgggacct
ccaggccctcctgggtctcctggcatcccaggacctcatggacccccaggccctgttcct
ttcacaggcacatttggcctggaggatattcagaaatacttagagaatgttggttttaaa
ggaccacctggaccaccggggcctcctggacctcagggctctcctggaatcacaggaagc
ctggtgtcatatgctgagaatgcacaccaagagccaatccgtgctgaactgcaagaatat
ctaaagagtggcagggtgttccgtgaagagccaagctatagctttacaaagcctattgag
agtttggactatcccactattgcagaacaagtagtgaactacatcaagtctcgtggtttg
ttgttgcgggatctcaaagatatccaagggccgccgggtcctcctggaccacctggacgt
cctggaattagccattcatacagtacttataacaacatgactgagatatttaaaattatt
agagaccatggcatggttggaccaccaggaaaacctgggcagaaaggagaaataggatat
actggtcccagaggaccaagaggtcctagaggtgagcaaggcatccctggtctaccagga
cttcctggcaatgatggaccaagaggacaaaaaggagaaaaaggagaagatgcctacata
aatcacagaggaaagagaagtacaggtgtttag
DBGET
integrated database retrieval system
