Ictalurus punctatus (channel catfish): 108259266
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Entry
108259266 CDS
T04658
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108259266
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108259266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
108259266
NCBI-ProteinID:
XP_053532753
Ensembl:
ENSIPUG00000016448
UniProt:
A0A9F7RA41
LinkDB
All DBs
Position
27:15282721..15332146
Genome browser
AA seq
2415 aa
AA seq
DB search
MSAVKRPRGRPPKNTNGSSNQARLLSPPMKSSSSSSSSSSSSSSSSSSSSHSSSSEKRVP
KRQQQMEVLSLEDKQQKANRIISEAIARARERGEKNIPRVMSPESFPSSSQLHKHRAGSS
KSRAKKGCKSARIIKSPREKQKSLIKKIVIKIGKKKKRKTESSDELSDDEPPPRRPSKDD
SKRRSNRQIKRKRYAEEQEARLSDEEMKVIAKAKKINANTPKEPAVQLFVENPSEEEGAV
VDKIMASRVVKKEVSPGVVVEVEEFFVKYKNYSYLHCEWATEQQLEKDKRIQQKIKRFKM
KQAQRAHFFADMEEDPFNPDYVEVDRVLEVSYCEDKDTGEPVVYYLVKWCSLPYEDSTWE
LKEDVDQSKIVEFEQLQAVRPDSRRMERPPASHWKKLEQSREYRNGNSLREYQLEGVNWL
LFNWYNRRNCILADEMGLGKTIQSITFLDEILSTGIKGPFLIIAPLSTIANWEREFRTWT
HLNVIVYHGSALSRQMLQQYEMYFRDAQGRVLRGVYRFQAVITTFEMILGGCPELNAIDW
RCVIIDEAHRLKNKNCKLLEGFKLMRLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSE
STFMQEFGDLKTEEQVQKLQGILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYR
AILEKNFSFLAKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILEDFREVCSPSALD
FHLQAMVQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGR
VRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQAR
CHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGGTMQQQL
SKKEIEDLLRRGAYGALMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFV
ASGNRTDISLDDPNFWDKWAKKAEIDLDTVNGRNSLVIDTPRVRKQTRPFSATKDELAEL
SEGESSGDDKPKLRRLHDRLNSYGRTECFRVEKNLLVYGWGRWRDILQHGRFKKQLSERD
VEWICRALLAYCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQNHLGLSTPVPRGRKGKKM
KTQSSGFDIQKAEWIRKHNPEHMLSDDGYKKHLKHHCNKVLLRVRMLYYLKQELIGSQCQ
KVLDGVEASEIEIWVPEPDHSELPVMWWDMLADKCLLLGVYKHGYEKYNTIRADPALCFL
ERVGRPDDKAIAAEQRANDFMDGDGDDPEYKPAPTLLKDDMEDDASSPGDLVITDTGGEG
MLDVGGSSLGAVTEAYWPSSSALTARLRRLITASQRFTKSRQILQIHQTQQTSTPDLCPL
PPMLTDAINPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPELGRFDWTKFRAMARLH
KKTDESLHKYLCAFTAMCRRVCRLPPREGDVVDPSLSIQPITEERASRTLYRVELLRQIR
EQVLRHPQLFERLALCQPGSDLPVWWEPGAHDRDLLIGAAKHGVSRTDYHILRDPELSFM
TAQRNYSQNKGAAAQSQAQNQALLLGQTRTPTPLAQSQNPGAPPSPLTNSIPREVTPKEE
LLLAGEEEAGTQTWPSLRPPTPTGVGLKEEKEGENERRMEAARTKPLAPNPESRKQKKLS
KRSRKEARRRSGSDTDSDASSSSSSSSSSSRSSSSSSSSSRSGSSSSSSSSSCSSGSSSS
SSSSSSSEESDGEEVPKNTAVVPGVKGFDEDSIASHSTTHDDTQDSHVTNGTTNLSHPFH
GGGYMLAASYWPKDRVMINRLDSICQAVLKGKWPGSRRSYEGSATVSSFYTTKLMDNAAS
LADDPAASPQGSKVKKHDADREKEFSVKINDEGSLKLTFQKQGLPLKRPLDGEEGPLAQQ
QYLARLQELQSASDSSLTDYTKTQNSYPPGLSGQMRLNGLVDGQPVMKKRRGRRKNVEGM
DHLFLNKNRPTALPDQVPPGWSGVTTPASTPGASQVVAGPVDTESRVPVINLKDGTRLAG
DDAPRRKDLDQWLKEHPGFVADVGAFIPGVNKIQFQDGRPKQKRHRCRNPNKIDVNSLTG
EERVQIINRRNARKIGGAFAPPLKDLCRFLQENPEYGIPPEWADVVKQSGYLPESMFDRI
LTGPIVPEEVSRRGRRPKNALAKAANVANANASAALGVNPLLSNGLVSGLDLNSLQALQS
LQNFQLTAGLMGLQTDPANMAAMLPMMLSGMAGLPNLLGMSGLLGKQEAASVEDSGKKSG
GETTAQTSEIQSERTESPSSTSASASGQALALNPLLLSSMLYPGMLLNPGLNLPVANQPQ
ATSPQLAPPAQPAPSDAAQQSSGQSEKDAEDDGEEPDEQKDISGPEGSGKAESSSSDADS
SSSSSSDDSDSSDED
NT seq
7248 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggtgaaaagaccgagaggacggcctccgaaaaacactaatggttcaagcaac
caggcccggctgctcagcccaccgatgaagagcagctcctcctcttcttcctcctcctcc
tcttcctcgtcttcctcgtcttcgtcctcgcactcgtcctcctcagagaagcgtgtcccc
aagcggcagcagcagatggaggtgttgtcgctggaagacaagcagcagaaggccaaccgc
atcatctctgaggccatcgccagggcacgcgagcggggcgagaagaacatcccgcgcgtc
atgagccccgagagtttccccagctcctcccagctacacaagcacagagcgggatcctcg
aaatccagagcgaagaagggctgcaaaagcgctcgcatcatcaagtctcccagagaaaag
cagaagagtctgatcaagaaaatagtgataaagatcgggaagaagaagaaacgcaagacg
gaatcttcagacgagctctcggatgatgaaccgccgcctcgacgaccctccaaagacgac
tcgaagcgtcggtcgaaccgacagataaagaggaagaggtacgccgaggagcaggaggcc
cggctgtctgatgaggaaatgaaggtcatcgccaaagccaagaagatcaatgcgaacact
ccgaaagagcctgcagtacagctgtttgtggagaatcccagtgaggaggaaggagcggtg
gtggataaaatcatggcctctcgcgtagtgaagaaggaggtgtctccaggggttgtggta
gaagtggaggagttttttgtcaaatacaaaaactactcttatctgcattgtgagtgggct
acagagcagcagttggagaaggacaagaggatccagcagaaaatcaaacgcttcaagatg
aaacaggcccagagagcgcatttcttcgccgatatggaggaggatccatttaatcctgat
tatgtagaagtggacagagtccttgaggtctcgtactgcgaggacaaggacactggagag
cctgtggtgtattacttggtgaagtggtgttctttgccgtacgaagacagcacgtgggag
ctaaaggaagatgtggatcagagtaagatcgtggagtttgagcagctgcaggcagtgaga
ccagactccagaagaatggagcgccccccagcaagtcactggaagaagctggagcagtcg
agggagtaccggaacgggaacagtctcagggaataccagctggagggcgttaactggctg
cttttcaactggtacaacaggcgtaactgtatcttggctgatgagatgggtttggggaaa
accatccagtcgatcacgttcctggacgagatcctctccactgggatcaaagggccgttc
ctgatcatcgccccgctctccactatcgctaactgggagcgcgagttccgcacgtggact
cacctgaacgtcatcgtctatcacggcagcgcgctcagccgccagatgctgcagcaatac
gaaatgtacttccgagacgctcagggtcgtgtgctgagaggcgtgtaccggtttcaggcg
gttatcaccacgttcgagatgattttaggaggctgtccggagctcaacgctatcgactgg
cgctgtgtgatcatcgacgaagctcatcgcctgaaaaacaagaactgcaagttgctggag
ggcttcaaactcatgcgtctggagcataaagtgttgttgactggcacaccgctgcagaac
accgtagaggagctgttcagtctgctgcatttcttagagccctcacggttcccctctgaa
agcaccttcatgcaggagtttggagacctcaaaactgaagaacaggtccagaagctgcag
ggcatattgaagccgatgatgcttcgccgcctgaaggaggacgtcgagaagaagctggct
ccaaaagaggagaccattatcgaggtggagctcaccaacatccagaaaaaatactaccgt
gccattttagagaagaatttctccttcctggccaaaggagccggccaagccaacgtcccc
aatctggtcaacaccatgatggagctgaggaaatgctgcaaccacccctacctcatcaaa
ggcgcggaggagaagatcctggaggactttcgcgaggtgtgcagcccctcggccctggac
tttcacctgcaggccatggtgcagtccgccggcaaactcgtcctcatcgacaagctgctt
cctaaaatgaaggccggcggccacaaagtgctcatcttctctcagatggtgcgctgcctc
gacatcctcgaagactacctcatccagagacgatacctctacgagcggatcgacgggcgc
gtacgcggaaaccttcgccaggctgcgatagaccgtttcagtaagcccgactcggaccgc
ttcgtcttcctgttgtgcacgagagcaggaggcctgggcattaacctcactgctgccgat
acctgcatcatctttgactcggactggaaccctcagaatgacctgcaggcccaggctcgg
tgccacagaatcgggcagaacaaggcggtgaaggtgtaccggctcattacacgcaactcg
tacgagcgggagatgtttgaccgggccagtctgaagcttggattagacaaagctgtgctg
cagagtatgagtgggcgggacaacagtctcggaggaggagggacgatgcagcagcagctc
tctaagaaagagatcgaggacctgttgaggcgcggcgcgtacggcgcgctcatggacgag
gaagatgagggtgccaagttctgtgaggaagatatcgaccagatcctgcaacgcagaacc
aaaactatcaccatcgagtcagagggacgggggtctacttttgccaaggccagtttcgta
gcctctggaaatcgcacggacatttctctggacgatcccaacttctgggataaatgggcg
aagaaggccgagatcgatctggacacggtcaacggcagaaacagcctggtgatcgacacg
ccgagggtaaggaaacagacgcggccgttcagtgccactaaagacgaactggctgaactg
tcggagggtgagagcagcggagacgacaagcccaaactgcggcggctgcacgaccgcctc
aacagctacggccgcacagagtgcttcagggtggagaagaacctcttggtgtacgggtgg
ggccgctggagagacatcctgcagcacggccgctttaagaagcagctgagcgagagagac
gtggagtggatctgcagagcgctgctcgcttactgcctagtgcactacagaggagacgac
aagatcaagagcttcatgtgggacctgatcgctccgaccgaggacggcaggaccaaagaa
ctccagaaccacttgggactctccacgccggttcctcggggcaggaaagggaagaagatg
aagactcagtccagcgggtttgacattcagaaagctgagtggatcaggaagcacaacccg
gagcacatgctgtctgatgacggatacaagaagcatctaaagcatcactgtaacaaggta
ttattgagggtgagaatgctgtactacctgaaacaggagctcattggttctcagtgtcag
aaagtgctggatggagttgaagcaagtgagatcgagatctgggttcctgagccggatcat
tcggagctgcctgttatgtggtgggacatgctagcagacaagtgtctgctgttaggagtc
tacaagcatggttatgagaagtataacactattcgtgcagatcctgctctgtgcttccta
gagcgggtcggccgaccggacgacaaggccatcgctgctgaacagagagcaaatgacttt
atggatggggatggtgacgatccggagtacaagcctgcacccactttgcttaaagatgat
atggaggatgatgcgtcctctcctggtgatctggtcataacggatacaggaggagaaggc
atgctagacgtgggaggcagttctctgggagctgtcacggaagcatactggccatcttca
tccgccttaacggctcggctgaggcgcctgatcaccgcatcccagcgcttcaccaagagc
aggcagatcctgcagatccaccagacacagcagacttctacccctgacctttgccctctg
cctcccatgcttacggatgcgatcaaccccaaaatggctgccaagatcgaacggcaacaa
aggtggacccggagagaggaggcagatttctaccgcgtggtgtctacgttcggcgtggtg
tttgatccggaactgggccgcttcgactggaccaaattcagagccatggctcggctgcac
aagaagaccgacgagagtctccacaaatacctctgtgctttcactgccatgtgcaggcgg
gtctgccgcctaccaccgagggagggagacgtcgtggatccgtctctgtccatccagccg
atcacagaagagcgtgcctcacgtacgctgtaccgcgtggagctgctccggcagattcgg
gaacaggtcctgcgccaccctcagctctttgagcgcttggcgctatgccaacctggctca
gatctgcccgtgtggtgggagccgggcgctcatgaccgcgacttgctaatcggtgcagct
aagcacggagtgagccggacagactaccacatcctccgagaccctgagctgagtttcatg
acagcccagaggaactacagccaaaacaagggcgcagcggcacaaagccaagcccaaaat
caggcactgctgcttggacagacgcgcaccccgacccctttagcacagagccagaatcct
ggagctccgccttcaccactaactaactccatccctagggaggttacacccaaggaggag
ctgcttttagcgggagaggaggaggcggggacacagacctggccttccctcaggcctccc
acgcctacaggagtggggttgaaagaagagaaagaaggagaaaatgagagacggatggag
gccgcacgaaccaagccgctcgcacccaaccccgagagccgaaagcagaaaaaactgagc
aagagaagtcgcaaggaggccaggaggaggtccgggtccgacacggattcagatgcatct
tcctcgagctcctcgtccagctcttcatcgagatcctcgtcttcgtcgtcgtcttcttcg
cggtcagggtccagttcctcgtcctcgtcgtcttcctgctcttccggctcgtcgtcttcg
tcgtcatcgtcctcgtcttctgaagagagcgatggcgaagaggttccaaagaacactgca
gtggtgcctggcgttaaaggctttgacgaggacagcatagcatctcatagcactactcac
gacgacacgcaggacagtcacgtgaccaacggcaccactaacctctcccacccttttcac
ggcggaggctacatgctcgctgcttcctattggccgaaggaccgtgttatgataaaccga
ctggacagtatttgtcaggcggtgttgaagggtaagtggcccgggtctcggcgatcgtac
gagggaagtgctacggtgtcctcgttttacaccactaagctcatggacaacgccgccagc
ttggcagacgaccccgcagcctctcctcagggttcaaaggtgaagaagcatgatgcagac
agagaaaaggagttctcagtcaaaataaatgacgaaggcagtctgaaactgaccttccag
aagcagggtttgccattaaagcgccctctagacggcgaggagggacctctggcccagcag
cagtacctggctagactacaggaactgcagagtgcctctgatagcagcctgactgactat
accaaaacacagaacagctatccacccggcctgagtggacagatgcgactgaacggactg
gtcgatggtcagccggtgatgaagaagaggagaggaagaaggaagaatgtagaagggatg
gatcatctctttctgaacaagaacagacctactgcgttgcctgatcaggttcctccaggt
tggagcggggtcacgaccccagcctcgacccctggcgcctcacaggtcgttgccgggccc
gtggacaccgagagcagagtccccgtgataaacctcaaagacgggacacggctcgccggg
gatgacgctcctagacggaaggatctagatcagtggctgaaggagcacccgggcttcgta
gcagacgtcggagccttcatcccgggggtgaataagatacagtttcaggacggacggccg
aagcagaagagacatcgctgtagaaatcccaacaagattgacgtcaacagcctgacggga
gaggaacgagtccaaatcatcaacaggagaaacgctcgcaagatcggcggtgcgtttgct
cctcctctgaaggatttgtgccggttcctccaggagaatccagagtatggaattcctcca
gagtgggcagacgtcgtcaaacagtcgggctatctcccggagagcatgtttgaccgcatc
ctcacaggtcctatcgtaccggaggaggtgagcagacgagggcgtcggcccaaaaatgct
ctggccaaagcggctaatgtggctaacgctaacgccagcgcggctctgggcgtcaaccct
ctcctgagcaatgggctggtctccggtctggacctgaacagcctgcaggccctgcagagc
cttcagaacttccagctcaccgcaggtctcatgggcctccagactgaccctgccaacatg
gccgccatgcttcccatgatgctctccggcatggccggcctgcccaacctactcggaatg
agcggcctgctgggaaaacaggaagccgcctctgtcgaggattcagggaagaaaagtggc
ggggaaacgacggcacagacgtcagagatccagtcggagaggacagaaagtccaagctca
acaagtgcttcagcctcaggccaagcgttagccctcaaccccttactgctctccagcatg
ctttacccagggatgcttctcaacccaggccttaatttacctgtggccaatcagccacaa
gctaccagtcctcagctcgcccctccagctcagcccgccccctctgacgccgcacagcaa
agctcaggccaatccgagaaggacgcggaggacgacggcgaggagcctgacgaacagaag
gacatcagtggtcccgagggctcggggaaggcggagtcatcttcctcagacgcagacagc
tcctcatcatcttcgtcagatgactctgattccagcgacgaagactga
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integrated database retrieval system
