Ictalurus punctatus (channel catfish): 108260122
Help
Entry
108260122 CDS
T04658
Name
(RefSeq) protein PRRC2B isoform X1
Organism
ipu
Ictalurus punctatus (channel catfish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAT2_N
ROKNT
Motif
Other DBs
NCBI-GeneID:
108260122
NCBI-ProteinID:
XP_017315624
Ensembl:
ENSIPUG00000020507
UniProt:
A0A2D0QBF3
LinkDB
All DBs
Position
28:18922082..18942707
Genome browser
AA seq
2182 aa
AA seq
DB search
MSDRLGQITKSKDGKSKYSSLNLFDKYKGKSIETQKTTVVARHGLQSLGKVAAARRMPPP
AHLPSLKSENRGNDPNVIIVPKDGTGWANKQEQPDQKNSVVSTAPPPESQQPLPLQKSVS
NLQKPTAAASQESTSTGGPKQWAQLNGKAVDQDVTLALPAGLRASNRLQPFSHEEFPTLK
AAGEQDKVGKEKSAFDPSYGPGPSLRPQNVTSWREGGGRYLQPPSLSSALSSDSEGKTSA
SPEATTPIPPPSSSSTSTSSSSSANAVTTANATSPDPKDPSLRPAPPTRRTTPGLQYQLH
HSSTTTYHDMLPAFMCPKEIRDGPSSSEHGAAAAAAVVAPMRFDARPTFRPTYPPPDPVN
GDVRRENRFGRVPPRPSPRPVRRPGGRPSRPAIINPDDLKDLDDLDNDCEDGWAGLHEEV
DYSEKLKFSDDEEDHSPSDKSKIWGEWESRRERQSSLSSDGQEDAYHHQHDPLPSRKTNS
RYGSTDGQPQQKTGGASESVEEQDESQRSAPPAPPRGKFVSPDVSEAVERARRRREEEER
RAREERLAACAEKLKKLDEKFGKIERPAAHSGDAHGADNKELSPSPGRETGKPHQEAWQH
GNKDVSEQKSDVLHSQEYRDDFSYRSEDDGPDHAQRHQKAVPPRFQKQQQDQVYKMQQWQ
QSGSGPAQRSYYPPHVLGFDPRWMMMPPYMDPRMTQGRSTVDYYSQSVHSSGVMKPAGQQ
DRLNSPGSASDEGCHPGTHQERRALAGDTYSVWSQDGYPPARSFTPPYQRQHERAERSQA
DDRSDRSCSQQDSYEERGMERVESPSEDLPHQGYRPSRGSDISLGSQRDEEAPQLPGHGE
YLRPEHQKEGSSNRHQRDGPDSRDEAREGKEKSFDSGFWRKDDSGKKDKDGARWSDPGSS
SSSSGGVSHPSEPSSRTFRRTGPIKKPVLKALKVEDKENEKPKSEPEEKPVPYRLEKEVL
TNVYDLKKDNQPVINRHPAPPPPVASHDEKQSSWPKVEKLSDPSEESNKENGWDGGNSQV
KENSESREPLPPRRNNWIFIDEEQAFAGARGVGRGRGRGFREFNSRGGGRGGRGDNRGTY
NAGNIQRSGRGRGSRDFVKAEDLQRGKPRRRNMSETLSEASEYEELPKRRRQKNGENGEA
AYSASGDTKRADRDSWRSNKVYNNDQSAGGEAREKPKTRSFGRSLPPRLNAGYSRGFGSK
DFSSWRGRGSQFGGGAVQENGYNFTNESFSRKSAEGDFVKYPPKFASSFAENGVEDRDGE
YHLDNENSDNRPLRRRRPPRQDKPPRFRRLRQERETGGQWNGDEYVNGDFTNPWPGRAKT
GEDRWPGQFPGSRQQEFAPQGEDWETGSENSDLNDWREKRGEAAAELGHGEPGSEKRELS
KRSFSSQRPLVERQNRKSDILESSKMPLSSGGPSNRNDGWQNGVTTSCRRSPEDTSPYGV
EQSEDGLSTSNAESSGKKPEKDLKPRSLKGGDLSEPLSQYDLNSYPIESDSGVSIPSPDG
FQDALAKKQRRPQEDERRRKEPGAPVTVKNRAIASKMPPRFAKKQGGISMEQPEETLSTN
NLGTEIWETNSTALTVQSSGGDSWTKQVSYTGSEPNSEDSDAGPEQSKEHKPGPIGNERS
LKNRKGSEGVERLEGPITPVNGVDIHVENVLPVPPIEFGVSAKDSDFSLPPGSAPVAVSN
PVTKLQDALASNAGLAQGIPMLRRDHLQPGISLNPISFPSTDLTLKMESARKAWENSQSL
PEQGSPGSAGSVSQPPCSSSSAVSYSSFGGVSMPPMPVASVAPSVSMQGNHIPPLYLDGH
VFPSQPRLVPQTMTQQQSYQQAAAAQQIPISLHTSLQAQAQLGLRGGLPVSQSQEMFNSI
PTFRSQVYMQPSLSHPSAMVLSGAAPLKGPYSAFPGMQPSEMVKPQSGSHFQPINGSQAL
VYDSTINQAAGMGTSQLMDSQLIQVTMPLPGSQLRYGSAQQHLILPQSIQLQQGQNLSVS
APRRIMPPQSQPPVLTASREPSQLEMKGFQFPDKASHSPGIPGGSYRPGSASPSGKPSGP
GAPPTVGPLPGHYAQQVPPPQGNMVMHMRTSTSGPFPNPIQRPVMQVNKAVIMRSTPYSS
PGRDPPHSTPPTNPEPPNKGAEEGTKVKVLREARQVVSDLKAPSSSSVIPGKLQEAAAAG
PGKSNRTGAIKPHSVKVEESKA
NT seq
6549 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcgtttggggcaaataaccaagtccaaggatgggaaaagcaagtattcctcg
ctcaacctttttgacaagtacaagggaaagtcaatagaaactcagaaaaccacagttgtt
gctcgacatggcttacagagtcttggtaaagtggccgctgcccggcgcatgcccccgccc
gctcacctgccgagcctgaaatccgagaacagaggaaacgatccaaacgtgattattgtg
cccaaggacggaacaggatgggcgaacaagcaggaacaacccgatcaaaagaattccgtt
gtgtcgacagcaccgccgccggagtcgcagcagccgctgcctttgcagaaatccgtctcc
aatcttcagaagccaacagcggcagccagccaggagagcacaagcaccggtggaccaaag
caatgggcacaactaaatggaaaggcagtagatcaagatgtaacactggctcttcctgca
ggtttaagggcctcaaaccgactgcagcccttctctcacgaggaatttccgacgctgaaa
gcagcaggagaacaggacaaggttggcaaggaaaaaagcgccttcgatccgtcgtatggg
ccaggaccaagcctccgccctcagaacgtgacgagttggagggagggtggagggaggtac
ctgcagcccccgtctctatcctcagccctctcctccgattcagagggcaaaaccagtgcc
tcgcctgaggctaccactcctattcctcctccgtcctcatcttccacttccacttcctct
tcctcttccgctaacgccgtcaccaccgccaacgcgacgtctcccgacccgaaggatcct
tcgctccgaccggctccgcccacacgccgaacgacgccgggtctgcagtatcagctccat
cactcctcgaccaccacctaccacgacatgctgcctgcctttatgtgtcccaaggagatt
cgtgatggaccgagttcttccgagcacggagctgctgctgctgctgctgttgtcgcccct
atgcgctttgatgctcgacctacgtttcgaccgacttaccctcctcctgatcctgtcaac
ggagacgtgcggagagaaaaccggttcggccgagtcccacctcgtccctctccccggccc
gttcggcgtcccggaggccggccttcccgtcccgccatcatcaaccccgacgatctgaaa
gacctggacgacctggacaacgattgcgaggatggatgggcaggtcttcacgaggaggtg
gattacagtgagaagctcaaattcagtgacgatgaagaggatcactcccccagcgataag
agcaagatctggggagagtgggagtctcgtcgcgagcgccagtcgtccctgagctcggac
ggtcaggaagatgcgtaccatcaccagcacgatcctctgccttccagaaaaaccaacagc
agatacggctccacagacggtcagccccagcagaagaccggcggtgcgagcgagtctgtg
gaggaacaggacgagtctcagcgttccgctcctcctgcccctcctcggggaaaattcgtc
tcgccggatgtctccgaagccgtagagagggcgcggcggaggcgtgaggaggaggagagg
cgcgcccgagaggagaggctagccgcctgtgctgagaaactcaagaaactggacgagaaa
ttcggcaagatcgagagaccggcggcgcactccggcgacgcgcacggagcagataacaag
gagctatcaccgtcacccgggagagagacaggcaaacctcaccaggaggcctggcagcat
gggaataaagatgtgtccgagcagaaatccgacgtgctccacagccaggagtaccgagac
gatttcagctaccggagcgaggacgacggtccggaccatgctcaacgccaccagaaggcc
gttccaccccgtttccaaaagcagcagcaggatcaggtgtataagatgcagcagtggcag
cagtctggttctggtcctgctcagaggagttattacccccctcacgtgctcgggtttgac
ccccgctggatgatgatgcccccttacatggacccacgcatgacccagggacgctcgact
gttgattattactctcagagtgtccactcctcgggcgtgatgaagccggccgggcagcag
gatcgcctcaacagccctgggtctgcctcggatgagggttgccatcccggaacgcatcag
gaaaggagagcgctcgctggtgacacttactcggtttggagccaagatggctacccacct
gcgcgcagtttcaccccaccttaccagagacagcacgagcgcgctgagaggagtcaggca
gacgacaggagtgaccggtcatgctcccagcaggactcctacgaggagagagggatggaa
cgggtcgaaagtccttcagaagatcttccgcatcagggctatcgcccgagtcgagggtcc
gatatttctcttggctcgcagcgagacgaagaagcgcctcagctgccaggacacggcgag
tacttaagacccgagcaccagaaggagggttcctctaaccggcaccagagagacggtccg
gattctcgtgacgaagcacgtgagggcaaggagaagagtttcgactctggtttttggagg
aaagacgactccgggaagaaagacaaagacggcgcgcggtggtccgatccggggtctagc
agcagcagtagcggcggggttagccatccgtccgaaccgagcagcagaacctttaggagg
acgggtcctatcaagaaaccggtgctcaaggccctgaaagtggaggacaaggagaacgag
aagcccaaatctgaaccggaagagaagcctgttccatacagactcgagaaggaagtcctt
accaacgtctacgacctgaaaaaggacaaccagccggtgatcaacaggcacccggctcct
cctcctcccgtcgcctctcatgacgagaagcagtcttcttggccgaaagtcgaaaaactg
agcgacccaagcgaagagtccaacaaggagaacggctgggatggtggtaattcccaggtg
aaagagaactccgaaagcagagagcctctgccgcctcgccgcaacaactggatctttatc
gacgaagagcaggcgttcgccggagccagaggagtggggcgaggccgcggaagaggcttc
agagagttcaactcgcgcggaggaggccgaggagggcgtggcgacaatagaggaacgtac
aatgccgggaatatccaacggtcaggccgaggtcgagggtcgagggattttgtcaaagcc
gaggatttgcaacgaggcaaaccgcgaagacggaacatgagcgagactctgagtgaggcc
tcggaatacgaagagctgcccaaacgccgtcgccagaaaaacggagagaacggagaagct
gcgtattccgcatccggagacactaaaagggcagatagggattcctggaggtccaataag
gtctacaataacgaccagagcgccggtggagaagcgagggaaaaacccaaaaccagaagt
ttcggtcggtcccttcctccacgcctgaacgccgggtacagccgtgggtttggctcgaag
gatttttcctcttggcgtggaagagggagccagttcggaggcggagccgtgcaggagaac
ggctacaactttacaaacgagtccttctcaagaaaatccgcggaaggcgactttgtgaaa
taccctccgaagttcgcctcgtctttcgcggagaacggagtcgaagaccgagacggcgag
taccatctggacaacgaaaactctgacaaccggccgctgaggagaagacgccctcctcgc
caagacaaaccccctcggtttcgtcgtctacgtcaggaacgagaaaccggagggcagtgg
aacggcgacgagtacgtcaacggggatttcactaatccttggccgggtcgggccaaaacc
ggagaagaccgttggcctggtcagtttcccgggagtaggcagcaggaattcgctcctcag
ggggaggactgggaaaccggatcggaaaacagcgacttgaacgactggagagagaaacgc
ggcgaagcggctgcagaactgggccatggggagccgggctccgagaaacgagagctctcc
aagagaagtttctccagccagcgccctctggtggaaagacagaatcgcaagagtgacatt
ttggaaagctcaaagatgcctttgtccagcggcggtccgtcgaaccgaaatgacggctgg
cagaacggagtgacgaccagctgcagacggagtcccgaggacacttctccgtacggcgtg
gagcagagcgaggatggcctttccaccagcaacgctgaatcttctggaaagaagccggag
aaagatctaaaaccgagaagcttgaaggggggagacctgtccgagccgctttcacagtac
gacctgaacagctacccgatcgaaagcgactcgggagtctctattccgagtcccgacgga
ttccaagacgctctcgccaaaaaacagcggcgtccacaggaggacgaacgcaggaggaag
gagccgggagcgccggtaacggtaaagaacagagcgattgcttcaaaaatgcctcctcgt
ttcgcaaagaagcagggcggtatctcgatggaacagcccgaggaaacgctctcgacaaac
aacctcggcactgagatctgggagaccaacagcacggctctaacagttcagtcgtctggt
ggagactcgtggacgaagcaggtgtcgtacaccgggagcgaaccgaattcagaggattcg
gacgcggggccggagcagagcaaagagcacaaacccgggccgatcggaaacgagcgctct
ctgaagaaccgcaagggttccgagggagtggagcgtctggagggccccatcacgcccgtt
aacggagtggacatccacgtggagaacgtcctccccgtcccgcccatcgagttcggcgtc
agcgccaaggactcggacttcagcctccctccgggatcggcgccggtggccgtgtccaac
cccgtcaccaagctgcaggacgctctcgccagcaatgcgggccttgctcagggcattcct
atgctgcgtcgagatcacctgcagcccggcatcagcctcaatcccatttccttccccagc
accgacctcacactcaagatggagtctgcacgtaaagcctgggagaactcgcagtccctc
cccgagcagggttctccgggcagtgccgggtccgtctcgcagcctccctgcagctcgtcc
agcgccgtcagttacagctcgttcggaggagtgtccatgcctcccatgcccgtggcatct
gtcgctccctccgtgtccatgcaaggtaatcacatcccccctctgtacctggacggccat
gtgtttccaagccagcctcgtttggtgccgcagaccatgactcaacagcaaagctaccag
caggctgcagctgctcagcagatccccatctccctccacacgtctctgcaggctcaggct
cagttgggcctccggggcggtctgcccgtgtctcagtcccaggagatgttcaactctatt
cctactttcaggtcgcaggtgtacatgcagcccagcctgtcccacccgagcgccatggtg
ctttccggtgcagcccctctgaaagggccgtactctgcgttccccggcatgcagccctcc
gagatggtgaagccgcagtccggctcgcacttccagcctattaacggcagccaggcgctg
gtttatgacagcaccatcaaccaggcggcgggaatgggcacgtctcagctcatggactcg
cagctcattcaggtgacgatgcctttacccggttctcagctgcgttacggttcggcccag
cagcacctgatcctcccgcagtccatccagctccagcaggggcagaacctgtctgtcagc
gccccacgccgcatcatgcccccccagtcccagcctcccgtcctcaccgccagccgagag
ccgtctcagctggagatgaaaggatttcagttccctgataaagccagccactcacctggg
atacctggcggctcgtacaggccaggttctgccagccccagtgggaagccatctggtccc
ggtgcccccccgaccgtcggcccgctccccggccattatgctcaacaggtgccccctcca
cagggcaatatggtgatgcacatgcgcacctctaccagcgggcctttcccaaaccccatc
cagagacctgtaatgcaggtaaacaaggctgtaattatgcgctctaccccttactcgagc
ccgggccgcgatcctccccactccaccccccctaccaacccggagccccctaacaagggt
gcggaggagggcacgaaggtgaaggtccttcgtgaggctcggcaggttgtgtccgatctg
aaggcgccctcttcctcatccgtgattcccgggaaactgcaggaggccgctgcagccgga
ccggggaaatcgaaccgcaccggagccattaaacctcatagcgttaaagtggaggagagc
aaggcctga
DBGET
integrated database retrieval system