Ictalurus punctatus (channel catfish): 108263596
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Entry
108263596 CDS
T04658
Symbol
col21a1
Name
(RefSeq) collagen alpha-1(XXI) chain isoform X1
KO
K16629
collagen type XXI alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
DUF1194
Motif
Other DBs
NCBI-GeneID:
108263596
NCBI-ProteinID:
XP_017320075
Ensembl:
ENSIPUG00000016028
UniProt:
A0A2D0QRG5
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Position
3:6651963..6709374
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AA seq
986 aa
AA seq
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MQQKSSSAHIDYWCKTEAWCFRIIGCKMRSMHFVFWCLYFMFLHLFCTAQDEDMRSCRTA
PSDLVFILDGSWSVDDTNFEIVKRWLVNITTSFNIGQKFTQIGVVQYSDEPVLHIPLGKH
YSTKDLIRAMESIEYMGGNTNTGKAIKFANEKLFALSERGPNGVSKIAVVLTDGKSQDAV
MEAAEAARKKGIILFAIGVGSETEEAELKTIANKPSSTYVFYVEDYKAISKIREVIRQKL
CEETVCPIKIPIDSRDEKGFDILFHLKLAKKAKKTQGSFYGMKAYQVTPRDDLTENTRTL
FPDGLPPSYVFVATLKYKGSVLTEDWDLWRIQTTDGQPQMAVTLNGLKRTVTFTTTSMAQ
SGIQTVVFTKSPAKKLFDEKWHQLRLLVTEEDVTLYVDDLEIENLPLEPPAGIFINGKTQ
VGKYVRKETTVPFEIQKLRIYCDPEQNNRETACEIPGVCASGSADIDPTPEPCVCPPGAP
GTPGQKGEPGIAGDPGKPGHAGADGKPGAPGPRGGAGLQGPPGMPGLRGADGYKGDKGSS
GEPGERGVEGLAGPPGQPGEKGATGSQGGQGMTGKDGQQGEKGNSGSVGPPGYPGKPGTH
GRDGKDGIPGRTGQKGDKGTPGIPGLDGREGHPGLPGMPGGEGPSGLKGETGLPGPKGAK
GTPGDNGEMGLPGIRGPSGLLGPKGSKGDNGVPGQSGLPGQQGQSGEAGNPGQPGQPGMP
GIKGSKGEIGAAGERGKEGLKGDKGDSGKPGYNGLTGLTGQKGEKGTTGESGQRGHIGHQ
GQPGMPGQPGPPGSRGQSGDTGQPGPPGPEGRPGRELSEQHIQQICREVLRSEIPSLLLS
TQHSQQRSCEHCHTRLGPPGPAGPIGPQGSRGFPGAPGSHGLQGHRGLPGRPGIPGMKGD
PGEKGEKGNQGRSGIGDPGQPGLPGPMGPPGVSKPGHPGTPGLPGRDGEEGKRGYSGEPG
PPGVCHPSMCYGAVLRRDPFVKGPNY
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaaatccagctctgcacatattgactattggtgcaaaactgaggcttggtgc
ttcaggatcattggttgcaaaatgagatccatgcattttgtcttttggtgtctgtacttc
atgtttcttcacttattttgcacagcccaagatgaggacatgagaagttgcagaacagct
ccaagtgacttagtattcatacttgatggctcatggagtgtggatgacactaattttgag
atcgttaaacggtggttggtgaacatcacaacaagctttaacattggccagaagttcacc
caaatcggtgtggtccaatacagtgatgaacctgttttacacataccactgggaaaacat
tactcaaccaaagacctaatcagagccatggagtccatagaatacatggggggcaacacc
aacactggaaaggctatcaagtttgccaacgagaagctgtttgcactatcagagcgtggt
ccgaatggggtttcaaaaattgctgtggttctaacagacgggaagtcgcaagatgcagtg
atggaagctgcagaggccgcaaggaaaaaagggataatactgtttgcaattggtgttggg
tcagagacagaggaagcagagctgaaaacaattgccaacaagccgtcctcaacctatgtt
ttctatgttgaagactataaagccatctccaagattcgtgaagttattcggcagaaactg
tgtgaagagactgtatgtccaatcaaaataccaattgactctcgggatgagaagggattt
gatattctgtttcacctgaaattggccaaaaaagcgaaaaagacacaaggatccttttat
ggaatgaaagcctaccaagtgacacccagagatgacttaacggagaataccaggactttg
tttcctgatgggcttccaccttcttatgtgtttgtggccacacttaaatacaagggttct
gtcctcacagaggactgggatctctggagaatacagactacggatggacagcctcaaatg
gcagttactttaaatggtttgaagaggacagtcacattcactactacaagcatggcccaa
agcggaatacagacagtggtcttcaccaaatcaccagcaaaaaagctttttgatgaaaaa
tggcatcagctgcgtcttctggtaacagaggaagatgtaacgctttatgttgatgacttg
gaaattgaaaacttgcccctggaaccccctgctggcatttttatcaatggaaagacacaa
gttgggaaatatgtcagaaaagaaacaactgttccttttgaaattcagaaactacgaatc
tactgtgacccagagcagaataacagggaaactgcttgtgaaatacctggagtctgtgcc
agtggatcagctgatattgatccaaccccagagccatgtgtctgtccacctggggcacct
ggtactccaggccaaaagggagagccaggaatagctggggatcctggcaaacctggtcat
gctggtgctgatggtaagcctggtgcacccgggccaagaggaggtgctggccttcaaggt
cctcctggcatgccggggcttcgtggagcagatggatacaagggggataaaggaagttct
ggggaacctggtgaaagaggtgttgaagggttagctggccctccaggtcaaccgggtgaa
aagggggcaactggctctcaaggtgggcaaggaatgacaggcaaagatgggcaacagggt
gaaaagggaaacagcggatctgttggcccacctggatatccagggaaacctgggacacat
ggaagagatgggaaagatggaattccaggacggactggacaaaagggtgataaaggcact
cctggtattcctggtctagatggaagagaaggacatcctggactgccaggaatgcctgga
ggtgaaggcccaagcggattaaagggtgagacaggattaccaggaccaaagggagcaaaa
ggcacaccaggggacaatggcgagatgggtttgcctggaatacgtggtccatctggatta
cttggacccaagggcagtaaaggagacaatggtgtgccgggtcaatcagggctacctggt
caacagggtcaatctggagaagcagggaacccaggacagccaggacagcctggaatgcct
ggtataaagggatctaagggggaaataggagccgcaggtgaaagagggaaagaggggttg
aaaggtgacaaaggagattcaggaaaacccggttacaatggtttaactgggctgacagga
caaaaaggagagaaagggacaacaggagagtctggccagaggggacatataggccaccag
ggacagccaggaatgccaggacagccaggtcctcctgggtccagaggacagagtggtgac
actggacaacctggaccacctggacctgaaggacgacctgggagagagttgtctgagcaa
cacattcagcagatatgcagagaggtccttcgatcagagattccctcacttcttcttagt
acccaacacagtcaacagagaagctgcgaacactgtcacacaaggctgggacctcctggg
ccagcagggccaataggtccccagggttcccgaggttttcccggagcaccaggttcacat
ggattgcagggacaccgaggtttacctggacggcctggtattcctggcatgaaaggtgat
ccaggagaaaaaggtgaaaaaggaaatcaaggacggtcaggaattggagacccaggtcaa
ccaggacttccaggtccaatgggtcccccaggcgtcagtaaacctggtcatccaggcaca
cccggcttgcctgggcgtgatggggaagaggggaagagaggatattcaggagaacctggg
ccaccaggtgtgtgtcatccatctatgtgttatggtgcagttttaagaagggaccctttt
gttaaagggccaaactattaa
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