Ictalurus punctatus (channel catfish): 108265581
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Entry
108265581 CDS
T04658
Symbol
nr1h5
Name
(RefSeq) nuclear receptor subfamily 1, group H, member 5
KO
K08538
farnesoid X receptor beta
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108265581 (nr1h5)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108265581 (nr1h5)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108265581 (nr1h5)
Nuclear receptors [BR:
ipu03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
108265581 (nr1h5)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108265581
NCBI-ProteinID:
XP_017323587
Ensembl:
ENSIPUG00000010855
UniProt:
W5UFY2
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All DBs
Position
5:29643352..29658011
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AA seq
489 aa
AA seq
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MREWMDPEMGMMTGGYLSGADAYGMAEPQYYDVLVDPLGYSYQDLDLQAFPYSQQHYNPT
NVQVSVYGPPSSQPCNPAYPYSPQCLEPPCPADVELHEQVRGGMGTTPGMKRPRLGPGAR
VRGQDELCVVCGDKASGYHYNALTCEGCKGFFRRSVTKKAVYRCKSGGSCEMDMYMRRKC
QDCRLRKCRAVGMLAECLLTEVQCQSKRLRKGAKHRGDSLSVLTAEDEESNESRNVSSTS
RLPAPARVPSGLSREQKCVLNRIVEAYRRYRAQDGTRVRVSQGSCLQDGTDRLTDLTPLE
IDRLLQFSKSIPGFELLDSADQSILLSSSSVEVMFLLLAQQFTENPSLYTSSLYPGNVSD
SSHSWVKTSQSKTNSHEMLLNSGMSEELLGPVLNFFHSMAAIAVTDAEYALLVATSVLCS
DRPYLCAVSCVENLQEFILELLSKVCRNGQGTTHGPCRFARLLGRLTELRTLHHNHLTLR
PQQIWDMQH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagagagtggatggatcctgagatgggcatgatgaccggaggctacctctctggagca
gatgcttacggcatggcagaaccgcagtactatgatgtgctggtggatccgttgggatat
tcataccaggaccttgatctacaggcttttccctacagccagcagcactacaatccaaca
aacgtgcaagtctctgtgtatggaccccccagctctcaaccgtgtaacccagcatacccg
tacagcccgcagtgtctggagcctccgtgtccagcagacgtggagctgcacgagcaagtg
agaggaggtatgggtacgacaccgggcatgaagagacctcggctggggcctggagctagg
gtcaggggtcaggatgaactctgcgtggtgtgtggggacaaagcttcaggataccactac
aatgctctgacctgtgaaggctgcaaaggcttcttcaggcgcagcgtcaccaagaaggct
gtgtatcggtgcaagagtggtggcagctgcgagatggacatgtacatgcgtcgcaagtgc
caagactgccgactgcgcaagtgtcgagctgtcggcatgctagccgagtgtctgctgact
gaggtacaatgccagtcaaagaggttaagaaagggggccaagcaccgaggcgactcactt
tcggtgctcaccgctgaggatgaggaaagcaatgaaagcagaaatgtgtcctctaccagt
agactacctgcaccagcacgggtgccatcaggattgtccagagagcagaaatgtgtcctg
aacagaattgtggaagcttatcgtcggtacagagctcaggatggcactcgtgtccgggtg
tcccaaggatcctgtttacaagatggtactgatcggttgaccgacttgacccctctagaa
atagatagacttctgcagttctcaaagagcatacctgggtttgagctcttggatagtgct
gatcaaagcattcttctctccagctcgtctgtggaggtcatgttcctgctcttggctcaa
cagtttactgagaatccgtccctgtacacctcatctctgtatcctggcaatgtgagtgac
tccagtcacagctgggtgaaaacctcacagtctaagaccaacagtcatgagatgctatta
aactcaggaatgagtgaggaactcttggggcctgtgctgaatttcttccacagtatggca
gccatcgcagtgacggatgctgaatacgctcttctcgttgctacttcagtgctgtgctca
gacagaccatatctgtgtgcagtgagctgtgtagagaacctgcaggaatttattctggag
ctgctttccaaagtgtgcaggaacgggcagggtacgactcacgggccatgccgtttcgcc
aggctgcttggccggctaacagagctgaggacgctgcaccacaaccacctcacactccga
ccgcagcagatctgggacatgcagcattga
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