KEGG   Ictalurus punctatus (channel catfish): 108265643
Entry
108265643         CDS       T04658                                 
Symbol
kdm5bb
Name
(RefSeq) lysine-specific demethylase 5B-B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ipu  Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    108265643 (kdm5bb)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ipu03036]
    108265643 (kdm5bb)
Enzymes [BR:ipu01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     108265643 (kdm5bb)
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108265643 (kdm5bb)
Chromosome and associated proteins [BR:ipu03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108265643 (kdm5bb)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel ARID zf-C5HC2 PHD JmjN CENP-U PHD_5
Other DBs
NCBI-GeneID: 108265643
NCBI-ProteinID: XP_017323684
Ensembl: ENSIPUG00000005126
UniProt: A0A2D0QZE1
LinkDB
Position
5:complement(25805408..25835189)
AA seq 1541 aa
MSQPQPDEFKPPPECPVFEPSWEEFTDPFAFINKIRPIAEKTGICKIRPPPDWQPPFACD
VDRLHFTPRIQRLNELEAQTRVRLNFLDQIAKFWELQGCTLKIPHVERKILDLYHLNKLV
SDEGGFDTVCKERRWTKIAMAMGFAPGKAVGSHLRAHYERVLYPYNLFLSGANLLAPELA
AKLMSFGAPPEQKKFVQKPSLPENGDDKEYKPHDLVQRQKVQVQPSDTCTPARRAKRMKA
ESGCGKSEGCAGGEVCENRPNLRRRMGSFVAKPEPVKEVPIQIKQEPVERDLQTEPEKTK
MRYKKGTPQPPVSVVDLYVCLVCGSGSDEDRLLLCDGCDDSYHTFCLIPPLPDVPKGDWR
CPKCLAQAPELAAKLMSFGAAPEQKKECSKPQQAFGFEQARREYTLKTFGDMADSFKSDY
FNMPVHMVPTELVEKEFWRLVATITEDVTVEYGADIASKEFGSGFPIRGSKFKVAPQDEK
YLNCGWNLNNMAMMAPSVLTHVTADICGMTLPWLYVGMCFSSFCWHIEDHWSYSINYLHW
GEPKTWYGAPGFAAEQLEAVMKKLAPELFESQPDLLHQLVTIMNPNTLMAHGVPIYRTNQ
CAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWIPLGRQCVDHYRLLNRYCVFSHDEMI
CNMGVKADQLDVVLASAVHKDIVQMINEERELREQIHKLGVVQCELFEYDFLQDDERQCL
KCRTTCYLSALTCPCRPGEQVCLHHVHQLCSCPPSKYTLRYRFTLDDLYPMMNAVKQRAD
SYDDWASRVTEVLEAKLDKKRNLSVFHSLLEESDTNGFPDNDLLRHLRVVTQDADRCSSV
AQQLLNGKRQTRYRAGGGKTQNQLTVEEMRSFVRQLYNLPCSLIQAPLLKELLNRIEDFQ
AHSEKVLSDAVSADSVVEIQALLDESSEFDVHLPEAPRLRERLEIARWLAAVRQAEDSGS
SARGLTLDAMRQLIDRAVGLTSDPAIERAMARLQELLTVSEQWEEKAQELLKARPPQSVE
SLTAILKETEAVPTYLPNCLLLRDAINRATEWLKEAEAVQLGGRVPVLDTLSDLVLRARA
IPVQLEPLERLEALVSEVQAWKESAAKTFLLKNSSFTLLEVLCPRCEVGNSLKRKMKKTK
GDTVSCGKKRTGRLDNLSDVEKSLSESKDSASAMATLAEVRLKELESLAPLRAANESKLL
PAADCGALKACVCQKSPMGAMRQCELCRDAFHSVCVRGQGDPCESEPWLCPLCRRSAKPA
LDRIVPLMASLQRIRVRLPEGDALRYMIERTVDWQRRAREVIASYNLPTTVQEHQGRRWA
GESSTKGQDWSKYSQEQSVFYIEQRCIPLQGLSTELEELMVEGLLLQVSLPETQQLYMLL
LNGPPAQCSPQHTHPATDSPQHTPYHTQEHTSPHKERDSVTPAEKKAKRRMEKEETELKI
DVRDRGSPKRKKQRMRREKRKERKAASVSASPIYLSDLSQSDDSEEDMVLCPAESCLQPA
GDEVFWVQCDCCNKWFHMICVGVSEKIAAEEDYMCVTCSAR
NT seq 4626 nt   +upstreamnt  +downstreamnt
atgagccagcctcagccggacgagtttaagccgcctccggagtgcccggtcttcgagccc
agctgggaggaattcaccgatccattcgcttttatcaataagattcgtccgatcgcggag
aaaacaggcatctgtaaaatccgaccgccgccggactggcagcctccatttgcatgtgac
gtcgacagacttcatttcactccgcggatccagagactcaacgagttagaggcacagacg
agggtcagactcaattttctggaccagattgctaagttctgggagcttcagggatgcact
cttaaaattccacacgtagagcgaaagatactagatctataccacttaaataagctggtt
tcagatgagggaggttttgataccgtatgtaaggagcgcagatggacaaagatagccatg
gcaatgggctttgcgcctggcaaggcagtaggatcacacctgcgtgctcactacgaaaga
gtcctctacccctacaacctcttcctgtctggggccaacctgctggctccagagttagct
gccaaactgatgagttttggggcacctcctgagcagaagaagttcgttcagaagccctcc
ctcccggaaaatggtgatgataaagaatataaacctcacgatctggtgcaaaggcaaaag
gtgcaggtgcaacccagcgatacatgcacgcctgccaggagagccaagcggatgaaagct
gagtctggctgtgggaaatcagaagggtgtgcaggtggagaggtgtgtgagaacaggccc
aatctcaggagacggatgggctcttttgtagcaaaacctgaaccagtaaaggaagtaccc
attcagattaaacaggagcctgtggagagagacctgcaaactgagccagagaaaaccaaa
atgcgctataagaaaggcactccacaaccacccgtcagcgtagtggacctgtatgtgtgt
ttggtatgcgggagtggtagcgatgaggataggctgttgctatgcgacggttgtgatgac
agctatcacactttctgcttgatcccaccccttcctgatgtacctaagggtgactggagg
tgccccaagtgtctggcacaggctccagagttagctgccaaactgatgagttttggggca
gctcctgagcagaagaaggaatgcagtaagccacagcaggcatttggcttcgagcaggcg
cgcagagaatacaccctcaaaacgtttggggacatggctgactcgtttaagtctgactac
ttcaacatgcctgttcatatggtgcccactgagctggtagagaaagagttttggcggttg
gtggccactatcacagaggatgtgaccgtagagtacggagccgatattgcatccaaggag
ttcggcagtggctttcccattagaggcagcaagttcaaggttgcaccacaagacgagaag
tacttgaactgtggttggaatcttaataacatggcgatgatggcgccgtccgtgctgacc
cacgtgacagctgatatatgtggcatgaccctgccctggctgtatgtgggcatgtgcttc
tcctctttctgttggcatatcgaggaccactggagctactccattaactacctgcattgg
ggagagcccaagacatggtatggagctccaggatttgctgctgagcagctggaggcagtg
atgaagaagctggcacctgagctatttgagtctcagccagatcttttacaccagcttgtt
accatcatgaaccctaacacgcttatggcccacggagtaccaatttacaggaccaatcag
tgtgcaggagagttcgtaatcacattcccaagagcctaccacagtggttttaatcagggc
ttcaactttgcagaggctgtcaacttctgcaccgtggactggatacccttgggccgtcag
tgtgtggatcactaccgcttgctgaatcgttactgtgtgttctcacacgacgagatgatc
tgtaacatgggtgtcaaagctgatcagttggatgtggttctggcttcagccgtgcacaaa
gacattgtgcaaatgatcaatgaagagagggaactccgagagcaaatccacaaattggga
gtggtgcagtgcgagttgtttgaatatgatttcctgcaggacgatgagagacagtgtctt
aaatgtcgcaccacctgctacctgtctgctctcacctgtccgtgtcgaccgggtgagcag
gtgtgtctacaccacgttcaccagctctgctcctgccctccctccaaatacacactgagg
taccgcttcactctggatgacctctaccccatgatgaatgctgtgaagcaaagggctgac
tcgtatgacgactgggcatcacgtgttactgaggtccttgaggccaaactagacaaaaag
cgcaacctgtctgtgttccattctctgctcgaggagtccgatacgaatggatttccagat
aatgatctgttgcgtcatctgagagtggtcactcaggatgcagacagatgttcgtctgtg
gcacagcagcttctcaatggcaagagacagaccaggtatcgtgctggtgggggtaaaacc
cagaaccagttgactgtagaggaaatgaggtcatttgtgcgtcagctttataacttgccc
tgcagtctaatccaagcaccgttactgaaggagctgctgaaccgtattgaggatttccag
gcacacagtgagaaagttctgtctgatgctgtgagtgcagattctgtggtggagattcag
gcccttctagatgagagctccgagttcgacgtgcatctgccagaggctcctcggctacgg
gagcgtctggagatcgctcgctggttagcagcggtgcgtcaagctgaggattcaggcagc
agtgcccgtggcctcactctggacgctatgcggcagctgatcgaccgcgctgttggctta
acttccgaccctgcgatagagcgtgccatggctcgcctgcaggagctgctcactgtgtct
gagcagtgggaggagaaagcacaggagctgctgaaagccagacctccacagagtgtggaa
tctctgactgccattctgaaagagactgaggccgttcctacgtacctgcccaactgtctg
ttgctgcgagacgccattaacagagccacagagtggctgaaggaggctgaggctgtgcag
ttgggagggcgtgtccctgtgttggacacactgtccgacttggtgctgagggcccgtgcg
attcccgtgcagctggagccactggagaggttggaggcgctcgtctctgaggtgcaggcg
tggaaggagtccgcagccaaaacttttctcctgaaaaactcctcttttaccctgctggag
gtgttgtgtccgcggtgtgaggtgggaaactctctcaaaaggaagatgaagaagacaaag
ggagatacagtgtcatgtgggaaaaagagaacggggagactggacaatctcagtgatgta
gagaaatccctgtcagagagtaaagactcggcttctgctatggcgactctcgctgaagtc
cgtttgaaggagctggagtccttggcgcctctccgtgcagctaacgagtctaaactcctc
ccagcagccgactgcggcgcactcaaagcgtgcgtgtgtcagaagtctcccatgggtgcc
atgcgtcagtgcgagttgtgtcgcgatgctttccacagcgtgtgtgtacgtggacagggg
gacccttgtgagtccgagccctggttgtgtcctttgtgtcggcgttcagcgaaaccggct
ttagacaggatcgtgccactgatggcgtctctgcagaggatccgcgtgcgtttaccagag
ggagatgcgctgcgttatatgatcgaacgcacagtggactggcagcggcgagcacgggag
gtcattgcttcatataaccttccaacgaccgttcaggagcaccagggaaggcgctgggca
ggggaaagcagtacgaagggtcaggactggagcaagtacagtcaggagcagtctgtcttt
tacatagagcagcgctgcatccctctgcagggtctgagtacagagctggaggagctgatg
gtagaaggattattgctgcaggtgtcactgcctgagactcaacagctgtacatgctacta
ctaaacggccccccagcccagtgcagtccacagcatacacacccagcaactgacagccca
caacacaccccctaccacactcaggaacacacttcaccacacaaagagagggactcggtg
accccagcggaaaagaaagcgaagcggcggatggagaaagaagagacggagctgaagatc
gacgtgagggatcgagggagcccgaaaagaaagaagcagcggatgagaagggagaagcgg
aaagagaggaaagcagcttcggtatctgcgtcaccgatttacctgtccgatctatcccag
tcggacgactcggaggaggacatggtcctctgcccagctgagagctgccttcagccagct
ggagatgaggtgttctgggtgcagtgtgactgctgtaacaagtggtttcacatgatctgt
gtaggcgtttctgaaaagatagcagccgaggaagactacatgtgcgtcacctgcagcgca
cgttaa

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