Ictalurus punctatus (channel catfish): 108266173
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Entry
108266173 CDS
T04658
Symbol
col8a1a
Name
(RefSeq) collagen, type VIII, alpha 1a
KO
K23455
collagen type VIII alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
108266173
NCBI-ProteinID:
XP_017324701
Ensembl:
ENSIPUG00000011482
UniProt:
A0A2D0R3S0
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Position
6:3364523..3376430
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AA seq
717 aa
AA seq
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MAVVPFLVILVQVVLLPSVFGGAYYGHKPHHQQLQPVPHIPHKGIGKEMPHMQYPHYRKE
MPHFPMHMNKGKDKKGETMPRGEQGIQGEVGPQGPPGPQGPPGPPGPQGNGVAGSPGNPG
SPGPPGLPGVGKQGMPGMPGKPGDMGPSGKQGEQGPGGAKGLPGMPGPPGPPGSQGLPGI
GKPGGQGRPGLPGPKGEAGHKGLPGLPGLPGPKGDKGIGHPGPQGPKGLPGPPGPPGHKG
LPGVGKPGTPGLPGAPGKQGQPGPPGPLGPKGPPGLEGKQGPQGLPGIGKPGDGGLPGQP
GVPGHKGLPGPPGLPGKAGLPGFGKPGYPGPKGDKGMGGPPGPPGPKGDKGYVGPPGMIG
PQGPSGPPGPPGPVGLPGGIGERGPKGEGGEGGAKGEHGPVGEPGPPGISGQPGQAGEDG
EPGPRGAPGPIGPKGDGGEKGLTGPPGPPGPPGIKGEGGAPGPKGPQGPNGIPGFAGPGG
PIGPPGPPGPKGEAGAPGQAGPPGEGSPGVAGPFGPPGPPGPSGLPGQPGQTGPPGPPGP
PGPPALNPDLMGVLPEMGPALDGVKTSGYMKGKYGGGADIMGSNGLEMPAFTAQLTTPYP
PVGTPVVFDKLLYNGRQNYNPQTGVFTCDLPGIYYFSYHVHCKGSNVWVGLYRNGEPVMY
TYDEYKKGVLDQASGSAVVPLQPGDTVHIQLPSDEASGLYAGQYVHSSFSGFLLYPM
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggttcctttcctggtgattttagtacaagtggtattattaccatctgttttt
ggaggagcatattacgggcacaaaccacatcatcagcagctccagcctgtacctcatata
cctcacaaaggtataggaaaagagatgcctcatatgcagtacccacattacaggaaagaa
atgccacactttcccatgcatatgaataaaggcaaggacaaaaaaggtgagaccatgcct
agaggtgagcagggtattcaaggtgaagttggaccacaaggacccccaggaccacaagga
ccaccaggacctcctggtcctcaaggaaatggtgtggcaggttctccaggaaatccaggt
tctcctggccctccagggttgcctggtgttggtaaacaaggaatgccaggcatgccagga
aagcctggtgatatgggaccatcaggaaaacaaggtgaacagggacctggtggagcaaag
ggactaccaggcatgccaggaccacctggtccccctggatcccagggcttgccaggaatt
gggaagccaggtggccaagggcgaccaggactgccaggacccaaaggagaagcagggcac
aaaggtctacctggtcttccggggttgcctggtccaaaaggggataagggaattggacat
cctgggccacaaggtcctaaaggcctaccagggcccccaggtccacctgggcataaagga
ttgccaggggtgggcaagcctggaacacctggtttgccaggagcaccaggtaaacaaggg
caacctggaccgcctggaccacttggtccaaaaggtccaccaggcttggagggcaaacaa
ggaccacaaggattgcctggcattgggaaaccaggtgacggtggattgccaggacaacca
ggtgtcccaggtcataaaggactaccagggccaccaggcttgccagggaaggctggatta
cctggatttggaaaaccaggataccctggcccaaagggtgacaaaggaatggggggacca
cctggtcctccaggaccaaaaggtgacaaaggatatgtagggccacctggtatgattgga
ccccaaggacccagtggtcctcctggccctccaggaccggtaggactgcctggtggtatt
ggtgaacgaggacctaaaggagagggaggtgaaggtggagcaaagggagaacatgggcct
gtaggagagccaggacctccaggaatttcaggccaaccaggtcaagcaggtgaggatggt
gagcctgggccacgaggagcaccaggacccatcggtcccaaaggagatggaggagagaag
ggtcttactggacctcctggccctcctggccctcctggtattaaaggagaagggggtgca
cctggtcccaaagggcctcagggacctaatggcattccagggtttgcaggaccaggggga
ccaattggaccacctggaccccctgggcctaagggagaagctggggctcctggccaggct
ggtcctccaggtgagggaagccctggtgttgctggcccttttggtcctcctgggcctcct
ggtccaagtggtttgccaggccagccaggtcaaacaggtcctcctggtcctccaggaccc
cctggaccacctgccctaaaccctgacctcatgggtgttctgcctgagatggggccagcc
ctggatggagtgaagactagtgggtatatgaaaggaaaatatggaggtggggccgatata
atgggttctaatggtcttgaaatgcctgcttttactgcacaactgactacaccctaccct
ccagttggcacaccagtggtattcgacaagctactgtataatggccgacagaactacaac
ccacagacaggtgtgttcacctgtgaccttcctggtatctattatttctcataccatgtg
cattgcaaggggtccaatgtgtgggtgggtctgtaccggaatggagaacctgtgatgtat
acatatgatgagtacaagaagggcgttttggaccaggcatctggcagtgctgtggttccg
ttacagccgggagacactgttcacatccaattaccatccgacgaggcatctggactctat
gcagggcaatatgtccactcttctttctctggtttcctactctatcccatgtag
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