Ictalurus punctatus (channel catfish): 108266197
Help
Entry
108266197 CDS
T04658
Symbol
col28a2a
Name
(RefSeq) collagen, type XXVIII, alpha 2a
KO
K23619
collagen type XXVIII alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108266197 (col28a2a)
Peptidases and inhibitors [BR:
ipu01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
108266197 (col28a2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
108266197
NCBI-ProteinID:
XP_047011868
Ensembl:
ENSIPUG00000010056
UniProt:
A0A979EVK2
LinkDB
All DBs
Position
6:complement(28261861..28284648)
Genome browser
AA seq
1272 aa
AA seq
DB search
MGQWLSWLLLLTGLLGVFTQDYYEEKTGERRTRVNGQTTNYLKYDGAAILDEDCGLELAF
LVDSSESAKGHHQQEKKFSMDIVDGLQSIRLNTGRKLSWRVSLLQYSSHVIIEQTFKHWR
GIENFKSSITPMGYIGHGTYTTYAITNMTKIFSEESRAGGIKIALLFTDGVTHPRNPDIF
SAVADAKNQGVKFFTIGITHVANEPANIARLRLLASTPPSRFLHNLQDIHITEKILSEIA
QLAEDECPVSQKCVCEKGEKGSSGPAGKKGRPGDDGTPGPKGQKGEGGLSGLPGRDGSEG
KPGYKGDKGDRGECGTPGIKGDRGPEGPVGTRGSRGLQGLPGPQGDIGPEGLQGKKGERG
LPGPPGLQGETGIGLPGPKGDMGFQGRPGPPGPTGIGEPGPPGPQGPQGVQGEKGPQGEG
YPGPKGDRGPDGPRGPRGQPGAGIKGEKGEFGPAGPPGPVGLPGFGIQGEKGVEGPRGPP
GGRGPPGEGLPGPKGEQGLPGETGSTGERGIGEPGPKGEPGAAGLAGLPGLPGEDGAPGQ
KGEPGASGLRGPEGAAGIGTQGEKGDQGQRGVRGLPGPPGISGPSGAKGEPGTPGRLGMP
GFPGRAIAGPKGDVGPAGPPGPIGETGYGLPGPKGDRGNSGPPGPFGPKGEGYPGPVGPP
GLPGLPGEPGPEGIGYPGPKGDVGFRGLPGLPGPTGEGIQGPPGNTGRPGPPGPAGPPGE
GIQGHKGDQGPPGVTGPRGPPGEGLTGAKGDRGLHGERGMKGVKGEMGDPGLPGQYGRPG
EKGEMGLTREDIIKLIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKDFVIALVD
RVTVGRNATRIGLILYSLDVHLKFNLARYMTKQDVKQAIRKMPYMGEGTYTGTAIRKATQ
EAFYSARNGVSKVAIVITDGQTDKRESVKLDMAVREAHAANIEMYALGIVNTSDPTQAEF
LRELNLIASDPDSEHMYLIDDFNTLPALESKLVSQFCEDENGALIYNRITNGGNGHNGYR
HNGYDTHNNVLYGNNGYGSRHVEEFDRGVNVQSGTYSERINPAPFSAKIDLDLRSQDQGG
HKLTDVNTDVLSVQTVHGNSRTSHTSIISSSLPSSSSSSLLPSSSSSSSSLPSSSSSSSS
SLPSSSSSSSSSLPSSSSSSSSSSSSSSLPSSSSSSSPSSTLSSSSSSVSVISTSVNVQP
QPRPVVVSAPLDPRCSLVLSQGTCRDYIIRWYYDKQANSCAQFWYGGCGGNENRFDTENE
CKKTCVLTSIAG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atgggtcagtggttgagctggctcctcttgctgacaggactgctgggggtcttcacgcaa
gattattacgaggaaaagacaggagagaggagaaccagggttaatggtcaaacaacaaac
tacctgaaatatgatggagcagccattttggatgaagactgtggtcttgaattggccttc
cttgtggacagctcagaaagtgccaagggccatcaccagcaggagaaaaagttttccatg
gacattgtggatggtctgcagagcatccgtttgaacactgggcgcaaattgagctggaga
gtgtcattactacagtacagcagtcatgtcatcattgagcaaacattcaaacactggagg
ggcatcgagaacttcaaaagcagcatcactcccatgggctatattggccacggcacctat
actacctacgctattaccaacatgacgaagatcttttccgaggagtccagagcaggtggc
atcaagattgcactgctttttacagatggtgtcacccacccaaggaatcctgacatcttc
tcagccgttgctgatgccaagaatcagggagtgaagttcttcaccatcggcatcacacac
gttgccaatgagcctgccaacatcgcacgtctgaggctgctagccagcacacccccctcc
cgcttcctccataaccttcaagatatacacatcactgaaaagatccttagtgagattgct
caactagcagaagatgagtgccctgtgtctcagaaatgtgtatgtgaaaagggggaaaaa
ggatcaagtggcccagcaggaaagaaaggtcgcccaggtgacgatggaacccctgggcct
aaaggtcaaaagggtgaaggtgggttgagtggacttcctggtcgtgatggctcagagggt
aaacctggatacaaaggagataagggagacagaggtgaatgtggcacaccaggaatcaag
ggtgacaggggtcctgagggtcctgttggtacaagaggatccagagggttgcagggttta
ccaggaccacagggtgacatcggaccagaaggcttgcaaggcaagaagggtgagcgtggt
ttgcctggtccacctggccttcagggcgagactgggattggacttccagggccaaagggt
gatatgggatttcagggtagacctggtcctcctggaccaacaggaattggagaaccagga
ccacctgggcctcaaggtccacagggtgttcaaggagaaaaaggaccacaaggagaagga
tatccaggaccaaagggagaccgggggccggacggaccaaggggcccaaggggacaacca
ggcgctggaatcaaaggagaaaagggtgagtttgggcctgcagggcctccaggaccagtt
gggcttcctgggtttggcattcagggcgagaagggtgtggagggtccaagagggcctcca
ggcggaagaggtccaccaggagagggtctgcctggaccaaagggtgagcaaggattacca
ggagagactggcagcactggagagagaggaatcggagaacctggaccaaagggtgagcct
ggtgctgcaggactggcaggtttacccggacttcctggagaggatggcgctccaggccaa
aagggtgagcctggagcctcaggcctgaggggacctgaaggtgcagcaggaattggtaca
caaggagaaaagggagaccagggccagcggggtgtcagaggtttaccaggcccaccaggt
atttctggcccttcaggtgccaagggagagcctggaacaccaggacgattgggcatgcct
ggatttcctgggcgagctatcgcaggaccaaagggtgatgtagggcctgctggtcctcct
ggaccaattggagaaacaggttacgggctgccaggtccaaagggtgaccgtggcaattct
ggccctcctgggccatttgggccaaaaggtgaaggatatcccggaccagtgggtcctcct
ggtcttccaggtcttcccggagagcctggacccgagggcattggctaccctgggccaaag
ggtgatgttggtttccgaggtttaccaggtttgccaggcccaacaggtgaagggattcaa
ggaccaccgggtaacacaggaaggccaggaccaccaggaccggccgggcccccaggagag
ggcattcaaggccacaaaggagatcaggggccaccaggtgtcactggaccaagaggacca
ccaggggagggactcacaggtgctaagggcgatagaggcttgcatggtgagagaggaatg
aaaggagttaaaggtgaaatgggtgaccctggactccctgggcaatatggaagacctgga
gaaaaaggcgagatgggcctcacaagagaggacatcattaaactgatcaaagagatttgt
ggatgtggcattaaatgtaaggagaggccaatggagctggtgtttgtaattgacagctct
gaaagtgtcggtcctgaaaactttgaaatcataaaagacttcgtcatagcactagtggat
cgtgtcacagtaggccgcaatgccacacgcatcggcctcatcctatacagcctcgatgtc
catctgaagttcaacctggcacgctacatgaccaagcaggatgtcaagcaggccatcagg
aagatgccatacatgggagaggggacatacactggtacagctattcgcaaggctacacaa
gaggctttttacagcgcccgcaatggagtcagcaaagtggccatcgtcatcactgatgga
cagacagataagagagagtctgtgaagctggacatggcagtgagggaggcccatgctgct
aacattgaaatgtatgctctagggattgttaacacatcagaccctacgcaggctgagttt
ctcagggagcttaacctcattgcctctgacccagacagtgagcacatgtaccttattgat
gactttaacaccttgcctgctttagagtccaagctcgtaagtcagttttgtgaggatgag
aatggagcactcatctacaatcgcatcaccaatggtggcaatggacacaacggatacagg
cacaatggctacgatacccacaataatgtcttatatgggaataatggctatgggagtcgt
catgtagaagaatttgacaggggggttaatgttcagagtggaacctattctgaacgaatc
aaccctgcacctttcagtgctaagattgatttagacttaaggagtcaagaccaaggtggc
cacaaattaactgatgtcaacactgatgtcctatctgtacagactgtgcatgggaacagc
agaacatctcacaccagcatcatatcatcatcactgccatcatcatcatcatcttcatta
ctgccatcatcatcttcttcttcatcatcattgccatcatcatcatcatcttcttcttca
tcactgccatcatcatcttcttcttcttcttcatcattgccatcatcatcatcatcatca
tcatcatcttcttcttcttcatcattgccatcatcatcatcatcatcatcaccatcatca
acattgtcctcttcttcctcatcggtatctgttatatctacttcagtgaacgtacagccc
cagccccgtcctgttgtagtctcagctcctctggatcctcgttgctcccttgtcctgagc
caggggacctgccgagactacatcatccgctggtactatgacaagcaggcaaactcttgt
gcccagttctggtatggaggatgcgggggtaacgagaaccgctttgacactgagaatgaa
tgcaagaagacatgcgttcttaccagtatagcaggttaa
DBGET
integrated database retrieval system
