Ictalurus punctatus (channel catfish): 108266297
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Entry
108266297 CDS
T04658
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108266297
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108266297
09142 Cell motility
04820 Cytoskeleton in muscle cells
108266297
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108266297
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108266297
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108266297
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108266297
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108266297
NCBI-ProteinID:
XP_017324875
Ensembl:
ENSIPUG00000000414
UniProt:
W5UGG0
LinkDB
All DBs
Position
6:complement(16564811..16640653)
Genome browser
AA seq
1670 aa
AA seq
DB search
MKCKLRMEGVMQPQHRGVVKILRVLLICLIVLVLTTEVNAGGKKHSEICGGRDCSGGCQC
YPEKGARGQPGILGSQGPTGPPGRAGDPGLQGFKGEKGNSGETGITGLKGAQGMIGSPGF
PGADGIPGHPGQQGPRGKPGADGCNGTRGDPGIPGLEGFNGVAGEKGQPGRKGEKGDSLE
ISVYMERFRGEKGLPGYPGPTGPPGIKGAQGRPGIIGAQGEKGYRGPPGPKGVANTLIKG
DKGNPGDVGDPGPPGNQEFKDTFPGPKGDKGSKGEPGDLAFHIKGETGLPGLPGNRGYPG
STGAPGRKGEAGDSGIPGQPGSKGELGEAGELIYSNGDSEVGPPGERGPPGPDGLRGNKG
SQGPPGPDAQTQEFVLPGPFGLKGEKGRKGDAGEPGIPASEPGPPGFDGLPGTPGPAGPK
GSWSVFFRGPEGPHGRPGNAGVKGQKGDHGHCECILQTSPPGPPGPAGDQGDPGTVGEWG
QPGDQGDQGPRGLPGLHGFPGPHGMPGPKGSKGDRREVKDKGSPGEPGDPGRPGVQGPQG
RHGTSGIDGAPGLHGLPGEGPVGEPGQKGYPGRPGIPGFPGLAGEPGQVNGAPKGVKGIA
GDAGLNGYDGVPGTPGTSGDCSLQGEGGKWITAGDCAALTGPPGEIGPPGHPGLEGMPGF
PGPKGFVGDRGKIGNKGEQGDQGIGGSPGKTGFTGPRGDLGSTGLKGLRGSSGIPGRPGL
DGESGQKGPNGEALGASPGPTGEPGLPGLQGIKGPPGNSGASGYPGMGGMPGMIGIKGES
GPSGLQGEIGRPGPAGIFGFPGKPGPEGLPGPRGHTGLPGPSGETGHRGDSGPPGLIGVK
GVRGEPGNDAGPGDYGPRGDPGDPGHVGPTGVPGLKGIKGSPGMAGFPGMSGDPGLKGLQ
GETGLVGIPGLQGDKGGMGHQGEKGERGVMGPPGKMSIGEMTHMKEVMKGAKGDHGHEGD
PGFTGPRGTKGLPGIPGQEGLHGLPGEPSTIKGLQGQTGALGLPGQKGMPGPTGPPGIQG
FFGPTGHRGDKGSSGAYGATGDVGIKGIKGEQGDIVDLPGPTGSRGETGPLGPLGQKGYT
GEPGVRGSPGFDGIKGIKGTQGEPGKQGLSGAEGLKGFPGNPGSKGWPGVPGQAGVPGKP
GYPGHIGFPGLRGISGLGGLKGLKGIQGVAGPDNWGIPGEDGAKGEKGATGIPNTETGVP
GADGLKGSTGDPGDQGKLGPQGNQGPPGAQGIPGRKGLSGDIGLPGQKGLPGFPGATGLP
GFPSPPGAKGEYGFNGDFGTTGPKGPPGDIGDKGFPGPSGIFGGKGIKGAMGKMGVPGPR
GLQGDRGVSGSKGETGPPGPSGPPGAEGLRPVPVKVPGERGPPGKDGKQGLQGVRGEYGP
MGPPGDAGYLGPQGQKGMPGLPGIPGTPGIRGDMGPIGHQGLQGLEGNSGHPGIPGAPGM
PGRSVSVGYLLVKHSQSDQTPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRF
NTMPFLYCNPGDICYYASRNDKSYWLSTTAPIPMMPVEESEIKPYISRCSVCEAPSVAVA
VHSQDITIPQCPVGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGA
KGTCHYFSNKHSFWLTSIDQSFHSTPESETLKAGQLLSRISRCQVCMKNL
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtaaattgcggatggagggagtgatgcagccacagcaccggggagtagtgaaa
atcctgagggttcttttgatttgtctcatcgttctcgtcctgacgacagaagttaacgca
ggtggtaagaagcacagtgagatatgtgggggcagagactgcagtggtggatgtcagtgc
tatcctgagaaaggtgcaaggggccagccaggtattcttggctctcagggccctacaggg
cctccaggacgtgcaggcgaccctggcctgcaaggttttaagggagagaagggtaattcg
ggtgagacaggcatcacaggactgaaaggggctcagggaatgataggaagtccagggttt
ccaggagcagatggtattccaggtcacccagggcagcaaggccctcgaggaaaacctggt
gctgatggctgtaatggaacccggggagatcctggaatacccggcctggagggatttaat
ggtgttgctggagaaaaaggtcagccaggcaggaagggtgagaaaggggactccctggag
attagtgtttacatggagagatttcggggcgagaaaggacttccaggatatccaggacct
acgggtcctcctggaatcaaaggtgctcaaggaagaccaggtatcatcggtgctcagggt
gaaaagggttatagaggacctccaggaccaaagggcgttgcaaatacactcattaaagga
gataaaggaaatccgggggacgttggagatccagggccaccagggaaccaagagtttaaa
gacaccttcccaggccccaaaggcgataaaggttctaaaggtgaaccaggagatttggcg
tttcatatcaaaggagagacaggacttcctggattacctgggaatcggggctatccagga
agcactggagcgccaggaagaaagggtgaagctggggattcgggtattcctgggcagccg
ggaagcaagggggagctaggagaagcaggagagctgatctattcaaatggagacagtgaa
gttggtcctccaggagaacgtggcccaccagggcctgatggtctcaggggaaataaagga
tcacagggtccccctgggccagatgctcagacacaggaatttgtgttgcccggaccattt
ggactaaaaggggaaaaagggaggaaaggtgatgctggggaacctggtatcccagcctca
gaacctgggcctccaggctttgatggcctaccaggaacacctgggccagccggaccaaag
ggttcatggagcgtgtttttcagagggcctgaagggccacatggacgtccaggaaatgct
ggagtgaaaggacaaaaaggtgaccatggtcattgtgagtgcattttgcaaacctcccct
cctggaccccctggcccagctggagatcagggtgaccctggaacagtgggagagtggggt
cagccgggtgatcagggagaccagggacccagaggcctccctggtctgcatggctttcct
gggccacatgggatgcctggccctaaaggctctaagggagatagaagagaggttaaagac
aaaggatcaccaggagaacctggagacccagggagaccaggtgtacaaggaccacagggc
agacatgggactagtggaatagatggtgcccctggacttcatggtcttcctggagaaggg
ccagttggtgagcctggacagaagggttacccaggcaggccaggtataccagggttccca
ggactagcaggggaaccaggtcaagtaaacggagcacctaaaggtgttaagggtatagca
ggtgatgcaggattaaatggttatgatggagtcccaggcacaccgggtacttcaggagac
tgtagtctacaaggagaaggaggcaagtggattacagcaggcgattgcgcggctttaact
ggacccccaggagagataggacccccgggacatcctggattggaggggatgccaggattt
cctggtccaaaaggctttgtaggagatagaggcaagataggaaataaaggagaacaagga
gaccagggcatcggaggctcacctggaaaaacaggttttactggacctcgtggagactta
ggcagtactggactaaaaggtctcagaggttcttctggcatcccgggtagaccagggctt
gatggtgagtctggacaaaaaggtcctaacggtgaagctctaggagcatctcctggaccc
actggtgaaccaggactgccaggactgcaggggataaaaggtccccctggaaactctggc
gcaagtggatacccaggcatggggggaatgcctgggatgattgggatcaaaggtgaatca
ggtccctcaggattacagggggaaataggaagacctggaccagcaggaatatttggcttc
cctgggaagcctggtccggaaggacttcctggacctcgaggccacactggactaccaggg
cctagtggagaaacaggccatcgtggagatagtggtcccccagggctcataggagtgaag
ggtgttaggggagaaccaggaaatgatgctgggccaggagattacggaccacgaggggat
ccaggagaccctggacatgttggacctactggtgttcctggacttaaaggtataaaaggc
tctccaggcatggcaggtttcccaggaatgtcaggagatcctggtctaaagggccttcaa
ggagagacagggctggttggaataccaggcctacagggagataaaggaggcatgggccat
cagggagaaaaaggtgaaagaggagttatgggccctccaggtaaaatgtccatcggagaa
atgacacatatgaaagaggttatgaagggtgctaaaggtgaccatgggcatgaaggagat
ccaggtttcactggcccacgaggcaccaaaggtttgccagggattccaggacaagaaggg
cttcatggattacccggcgaacctagcactataaaaggtctgcaaggacagactggagct
cttggactgcctggccagaaaggaatgccaggccctacaggacccccaggaattcaggga
ttttttggaccgactggacataggggggacaaaggttcatctggtgcttatggagcaaca
ggagatgttggaatcaaggggattaaaggtgagcagggtgacattgttgatctcccagga
cccacaggatccagaggggaaacagggccgcttggacctttaggtcagaagggttacaca
ggtgagcctggagttagaggaagtcctggttttgatggcatcaaaggaattaaagggact
caaggtgaacctggaaaacaagggctatcaggtgctgaaggcctaaagggctttccagga
aacccgggctctaagggctggccaggagtgccaggacaggcaggggtccccggtaaacca
ggttatccaggacacataggttttcctggccttcgtgggatttcagggttgggtggcctt
aaaggtctaaaaggcattcaaggtgttgcaggtcctgacaattgggggataccaggtgag
gatggagcaaaaggagaaaaaggagctacaggtattcctaacacagagactggggtccct
ggagccgatggccttaaaggttcaacaggagatccaggtgatcagggtaaactaggccct
cagggaaatcaagggcctccaggagcacagggaattcctggcagaaaaggtctatcaggg
gacatagggcttcctggtcagaaaggtcttccaggctttcctggagccaccggtcttcca
ggttttccatctccacctggagctaaaggagagtatggctttaacggggattttggaacc
acaggaccaaaaggaccaccaggggacataggagacaaaggatttcctggaccatctggt
atttttggaggaaaaggtataaagggagccatgggaaagatgggagtcccaggaccacgt
ggtttacaaggtgaccgaggcgtttctggatctaaaggagagactggaccaccaggccca
tctggcccccctggtgctgaaggactccgtccagttcctgtgaaggtgccaggggagaga
ggaccccctggtaaagatggtaagcaaggactccaaggagtcagaggggagtatggccca
atgggaccccctggagatgcaggatatttgggaccacaggggcaaaaaggaatgccaggg
ctgcctggaataccaggaacaccaggtatccgtggggatatgggaccaataggacaccag
ggcctccagggcctagaaggaaactctggccatcctggtattcctggtgcccctggtatg
cctggacgcagtgtcagtgttgggtacctcctggtgaaacatagccagtctgatcagaca
ccaatgtgccctgtgggaatgtccaagctgtgggatggctacagcttgctttactttgaa
gggcaggagaaagctcataatcaggaccttggtctggcaggctcttgtcttcctcgtttc
aacaccatgccattcctgtattgcaaccctggggacatatgctactatgctagtcgcaac
gacaagtcctattggctttctacaactgcccccattcccatgatgcctgtggaagagtca
gaaataaagccctatatcagccgctgttcagtatgtgaggctccatctgtggctgtagct
gtgcatagtcaggatataactatcccacaatgtcctgtaggctggagaagcttatggatt
ggctactcattcctaatgcatacggcagctggagatgaaggaggtggtcagtctctggtg
tctccaggctcgtgtctggaggatttccgcaccactcccttcatcgagtgtaatggagct
aagggtacctgtcactacttctcgaacaagcacagtttctggctgacatccattgaccag
tccttccacagtacccccgagtccgagacgctcaaggccggacagctcctctcacgcatc
agtcgctgccaagtctgcatgaagaacctgtga
DBGET
integrated database retrieval system
