Ictalurus punctatus (channel catfish): 108267418
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Entry
108267418 CDS
T04658
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108267418 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108267418 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108267418 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108267418 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108267418 (col4a6)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108267418 (col4a6)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108267418 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108267418
NCBI-ProteinID:
XP_017326956
UniProt:
A0A2D0RA34
LinkDB
All DBs
Position
7:21807856..21890472
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AA seq
1662 aa
AA seq
DB search
MKLWFAVFVVLCLDSTYAGSKTHEPCAGRDCSGKCSCPPIKGSRGQPGPLGPSGPTGPDG
FIGAPGPIGPKGERGHGGQSGPSGPKGDKGPVGVPGFPGLDGIPGHPGQEGPQGLPGADG
CNGTRGDPGFPSGFPGRPGNPGSKGLRGVKGQKGEPRFISTNSVPVGPVGERGFPGPVGL
PGPVGPIGLPGYPGRPGPPGPPGLTGHPGQGYEGEKGEKGDAGLPGLRGAPAALLGSPAI
STISKGEKGDIGPPGATGPQGPRGPYGYKGERGEKGILGLPGARGPPGFNGPLGEDGLKG
YRGSPGLFGLSGAPGPKGYRGESGPPGPTIFIGEQESFVQGPLGDPGFDGLPGPTGDAGL
PGRPGPPGDPGSSSFQTGTPGFPGFPGITGPKGEKGDAGQSSFSPVGLPGDRGLPGPPGP
PGPRGITETTLIPGDKTGTPGVKGSRGQLGVKGFKGAKGEVGLCDCFGEDISGREGPQGF
QGLPGFAGLSGRKGEVGDPGPPGLYGPQGPIGRPGERGFTGIKGEKGNPYYAARRGQKGD
IGQQGPAGPTGDIGQPGRNGAAGFPGAPGLPGDAGFGVIGDRGYPGSPGLKGRPGAPGDP
GIGYPGSAGVRGFPGDPGISGLPGISGPPGPPGLSLPCIIPGEPGNPGFPGLPGVPGPKG
EPGPPGLNGKPGADGSKGQRGDPGSGGQPGPQGFPGPRGDPGLPGSIENGRPGSPGNYGR
PGLQGAKGEPGEALGVAPGIRGLPGQPGELGDKGERGTPGLSGGRGFDGSSGNPGVKGER
GASGFPGLPGPPGPRGVSPSEVSGPRGPPGNPGFPGPGGFPGLKGTRGDPGRQGLGRKGS
SGRPGIPGPKGQIGRPGDTISGRNGQSGRPGKKGEKGFPGLVGFPGSPGRSGGSGQPGGK
GQPGIPGLDGERGVKGSLGFKGDRGEPGQPGPSSQRLPLQLIKGDQGTPGATGLPGFPGP
RGDKGTPGLPGRSGFPGQIGVVVKGPPGDPGFQGSTGSSGFAGTKGAPGVFGFPGMPGPR
GEDGVPGLYGQPGISGFPGSKGEKGDSTGAPGAPGRRGLVGDFGFPGRPGFAGEQGSQGL
PGDFGYPGQKGLPGDPGRPGSGGQPGPRGTKGLDGFPGQRGRDGESGLPGTPGRAGVKGL
SGSPGLDGLNGLSGPKGQPGIPGVVEGGQPGAPGLNGLKGERGTSVPGASGFPGVKGARG
DIGYPGRTGFPGPPGPPGRSIASGILGPLGDPGLPGLDGEKGIPGSPGPRGPAGPGTDQG
DRGDHGFPGLPGIPGIRGEPGFSGGRGPPGNSGFKGLRGDPGGNGPPGRLGSPGDQGSYG
SKGSKGFVGQPGSKGLPGIVVPPQIRDMPVGNPGPRGASGLPGYTGSTGQPGFPGRPGPK
GKIGSMGNPGRTGPAGPSGPIGDPGVPGYQGSAGGSGFRGRQGQPGPSGLPGRAIGIGYT
LVKHSQSSQVPMCPQGMDKLWDGYSLLYVEGQEKAHNQDLGLAGSCLPRFSTIPFLYCTT
SELCYYASRNDKSYWLSTTAPIPMMPVENEQITQFISRCSVCEAPSQAVAVHSQDVTIPP
CPRGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGARGTCFFFNNK
HSFWLTTVQQERQFTQSPDSETLKGDQYRGRISRCQVCMKIL
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgaaactttggtttgcggtttttgtggtcttgtgtctggactctacatacgcagggtcg
aagactcatgaaccatgtgcaggccgcgactgcagtggaaaatgttcctgtcctccgata
aaaggtagcaggggtcagcctgggcctttaggaccatctggccccactggacctgatggc
tttattggggccccagggcctattggacctaaaggagaaagagggcatggcgggcaatca
ggaccatctggacccaaaggggacaagggtccggtgggtgttcccggttttccaggtctc
gatggtattcctggtcatccaggccaggagggaccacagggactgccaggagcagacggt
tgtaatggcacacgaggtgaccctggtttccccagcggctttcctggtagacctggtaac
cctggatcaaagggattacgtggtgtcaaagggcaaaaaggagaaccacggttcatttct
acaaactcggttcctgttggtcctgttggtgaacgtggttttcctggtccagtcggcctc
ccgggtcccgtcggccccatcggtttacctggataccctggacgtcctggtcctccaggt
cctcctgggctaactggacaccctggtcagggttatgaaggagagaaaggagagaagggc
gatgcgggtctgccgggactcaggggtgctccagctgctctgttaggatcaccagctata
agcacaatcagcaaaggagagaagggtgatattggccctcctggtgctacaggaccacaa
ggaccccgaggcccatatggctacaaaggggaacgtggagagaagggaattcttggatta
cctggtgcaaggggtcctcctggttttaatggaccgctgggagaagatggcctaaagggg
tatcgtgggagccctggtctctttggattatcaggagctccaggccctaaaggttacagg
ggagaatcagggccaccagggccaactatctttattggtgaacaagaatcatttgtacaa
ggtcctctaggtgatcctggttttgatggccttccaggcccaactggagatgcaggttta
ccaggacgtcctggacctccaggtgaccctggatcttcatccttccaaacaggtactcca
ggctttcctggcttccctggtattactggacctaagggagagaagggagacgcaggtcag
tcaagcttcagccctgtcggtttgcctggagacagagggttacctggacctccaggtcca
cctggacctcgaggcataactgaaacaactctgattcctggggacaagactggaacacca
ggtgtaaaaggcagcagaggtcaactgggagttaaaggttttaaaggagccaaaggtgaa
gttggactttgtgattgctttggtgaagacatctctggcagagagggccctcaaggattt
caagggctccccggttttgcagggctcagtgggcggaaaggagaggttggtgacccagga
cctccaggactctatggaccacaagggccaattggtcgtcctggagagcgtggctttact
gggattaaaggagagaaaggaaacccttattatgctgctagacgaggacagaagggtgac
attggtcagcaagggcctgctggtcctacaggtgacatcggccaacctggaagaaatgga
gccgctggttttcctggtgcaccaggactaccgggagatgctggttttggggtgattgga
gacagaggttatcctggatctcctggtttgaagggtcgccctggtgcacccggtgaccct
ggaattggctacccaggcagtgctggtgttagaggatttccaggcgaccctggtatcagt
gggcttccagggatatctggacctccaggaccaccaggactgtcactgccctgcataatt
ccaggagaacctggtaatccaggtttccccggactgcctggagtgccaggcccaaaagga
gaaccaggtccaccaggactaaatggaaaaccaggtgctgatgggtcaaaaggtcagaga
ggagatccaggcagtggaggtcaacccggaccacaaggcttccctggaccaagaggagat
ccaggtttaccaggctctatagaaaatggccgtccaggttctcctggaaattatggccgt
cctgggttgcaaggagcaaaaggagaacctggcgaagctttaggggtggctccaggaata
cgcggacttccaggacaaccaggagagcttggagacaagggcgaacgaggcactcctgga
ttatcaggcggacgtggttttgatggatccagtggtaacccaggtgtaaagggggagcgt
ggtgccagtggtttcccaggactaccagggccgccaggtccacggggtgtgagtccttct
gaagtaagtggacctcgtgggccacctggcaatcctggattccctggacctggaggtttt
ccaggactcaagggaacaagaggagacccaggacgccaaggcttgggtagaaagggctct
tctggacgacctggaattccaggaccaaaaggacaaataggacgtcctggagatactatt
tcaggacgtaatggccaatcaggaaggccgggaaaaaaaggggagaagggattccctgga
ttggttggattccctggatcacctggacgttctggaggctctggacagccagggggtaaa
ggtcaacctggaatcccaggattggatggtgaacgtggagtaaagggctctcttggtttt
aaaggggaccgtggagaaccaggccaaccaggtccttcctctcaacgccttccactgcaa
ctcattaaaggggaccaaggtactcctggagctacaggactgcctggttttccaggacca
cgaggtgataagggaaccccaggtttacctggtcgttcaggctttcctgggcagatagga
gttgttgttaagggtccacctggtgatccaggtttccaaggaagcacaggttcttcagga
tttgcaggaactaaaggggcacctggtgtttttggtttccctggcatgcctggccctagg
ggtgaggatggagttcctggtttgtatggacaacctggtatttcaggattccctggtagc
aaaggtgagaaaggagactctactggagcacctggggcccctggaagaaggggactggta
ggagattttggattccctggtcgcccaggctttgctggtgaacaaggttctcagggtttg
ccaggagattttggatatcctgggcagaaaggactacctggagatccaggaaggcctgga
tcaggaggtcaacctgggccacgtggcactaagggtcttgatggttttccgggacagagg
ggacgggatggtgaatcaggtctccctgggactccaggtcgtgcaggagtaaaaggttta
tctggatcccctggtttagatggactcaatggactttcagggcccaaaggtcaaccgggt
atacctggtgtagtagagggcggtcagcctggagccccaggattgaatggactaaaggga
gaaagaggcacatcagtgcccggagcatcaggatttcctggagtaaagggagcccgagga
gatattggttaccctggacggacagggtttccaggtcctccaggtcctccaggacgatcc
attgcatctggcattcttggtcctctaggagatcctggtctacctggactagatggtgaa
aaaggtattcctggctcccctggtcctcgtggtccagctgggcctggaacagaccagggt
gacagaggagatcatggatttcctggattacctggaatccctgggatacgtggcgaacct
ggattttcaggaggacgtggaccacctggcaactcaggattcaaaggactgagaggagac
cctggaggtaatggacctccaggacgtctaggctcccctggagatcagggaagttatggt
agcaaaggatcaaaaggatttgtgggtcaacctggtagcaaaggccttccaggaattgtt
gtcccaccccaaataagggacatgccagttgggaatcctggtccacgaggagcctctggc
cttcctggttatacaggatcaacaggccagcctggtttccctggacgtccaggccccaaa
ggaaagattggatcgatgggcaatccaggtcgcactggtccagctggaccttctggaccc
attggagatccgggagttccaggatatcaaggatctgctggtggcagtggttttcgtggt
aggcagggacaaccaggtccttcaggtttgcctggacgtgccattgggatcggctacact
ctggtgaagcacagccagtccagtcaggtgccaatgtgcccacagggcatggacaagttg
tgggatggctatagcttgctttatgtagaaggacaggagaaggcgcataaccaagacctg
ggtttggctggctcctgtctacctcgtttcagcactattcccttcctttactgcacaacc
agtgaactctgttattatgccagccgcaatgacaagtcctactggctgtccacaacagca
cccattcccatgatgccagtagaaaatgagcagattactcagttcatcagccgttgttca
gtgtgtgaagccccatctcaagctgtagctgtccacagccaagatgtcactattcccccc
tgtccacgggggtggaggagcctgtggattggttactccttccttatgcatacggctgca
ggggctgaaggaggtggccagtcgctggtttctcctggctcatgtttagaagacttccgt
gcaacaccttttatcgaatgcaacggggctcggggtacctgtttcttcttcaacaacaag
catagcttctggctaaccactgtgcaacaagagaggcagtttacacaaagtcctgattca
gagaccctgaagggcgatcagtaccgtggccgcatcagccgctgccaggtctgcatgaag
atcttgtag
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