Ictalurus punctatus (channel catfish): 108267609 Help Entry 108267609         CDS       T04658                                  Name (RefSeq) synaptopodin-2 isoform X1   KO K24066   synaptopodin-2 Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ipu00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     108267609  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04990 Domain-containing proteins not elsewhere classified [BR:ipu04990]     108267609 Domain-containing proteins not elsewhere classified [BR:ipu04990]  PDZ domain-containing proteins   Other PDZ domain-containing proteins    108267609 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PDZ PDZ_6 PDZ_2 Motif Other DBs NCBI-GeneID:  108267609 NCBI-ProteinID:  XP_017327344 Ensembl:  ENSIPUG00000020468 UniProt:  A0A2D0R9U7 LinkDB All DBs Position 7:16287410..16330108 Genome browser AA seq 1513 aa AA seqDB search MSAQDYACVTVRGRAPWGFQLRQSDTESHRCVQVHQVEEGSHASMAGLCKDDELVSVNGV SCSSLSLAEVIVLIEKATDLLQLLVKRCCLYPQQKSQSVNTTLQASWKELREPYKSEHQL ETHYEETNSDTECPAGNTMVRTQFCIPAPKDRAGTDPFDSSDRGPRFEITPGAVVELQLS LSQTTLEDTGCTSLGSARGVKGELCHQPNTENDECTTSAPGRSFYIPLHEREPLGQRGVL VSSPSALLGQVEVTIQPSGRESGTERVGAGGTEATANEQQDYAEGEGGYTDEDPTSFSVS FGIPSEEEDSESERELNKPNKHRARHARLRRSESLSEKQVKEAKSKCKRIALLLTTAAPN PNNKGLLMFKKHRQRAKQYTLVSYGTGENEPEFEDEDDDYNDKETHAVEFTVLATSETEI DEDFFTNSSGQKNIVTFDLDTGLLEIERKLHNQEDMNALPETKGKGALMFAQRRQRIDEI AAEHDEMRSKGIPVEGIQEAEKIYQQVNQHSCIQTNDSQNYTDVNVYHQQQPQQYQQYQE QHYQQQQQHQYQEYQQQMQYHQQQQYYQQQQECQQEQQNQPQQYQQQQQMQQYFHNMNGV SSHQTNVVQSSVINRSAKPFSVQNRAAAPFPPSVNQQQTYYSDGQGEQIATRDERISVPA IKTGILQDTRRKNKAKPMFTFKEPQKVSPNPELLNLLNRNDKKAGFDSGMEEDYLSLGAE ACNFLQSTKLKNKTPPPVAPKPHIHQVTPVWSPQPETANRQFQQDVENNIPVTTRDPVPE MESTVIPEEEPSTAPASDQHEASTKLCSEVQPEAINAWGLSETQIQLGQQIGTWHENPSQ PQLHAKPEPAVSSWGPSSTEALEQPPVTAWGPAEVPSQVLAQNQPQMHPPWVTQSQVLSE VEPPTSFQTQSQPQPSWVTQNQQQHQPHSQSQINTWVTAPIQSAHQPPWAQNQVPRQASV STWSQDLNQPQVQPSWTQQQQESQPIPPWTASQQHPQSPWNQPQSQPQPQPTWVSQTQQQ TLPQPPVNTWNQSQSLVQTQPPWTHQAQPSSQPSAQMQQQQNPWTSVPPQLQPQPTWAQQ TQEHPQQTMNSWVPEQNKIQPPWNQPQSPTQAQPPWSHPPQQQTPLQSQFQTTLSTWTPQ PQQGPVITMGSTESQKLAQPSKPWSPPQTTEPPPPHQLNSNTPRSKVPSQMPGMGSASRM GSAFEMPALRGKGAELFAKRQSRMEKYVVDSSTVQANKARSLSPSPSLPASWKYSSNCRA PPPLAYNPLQSPSYPLGAIKQPPSTSPTLKNKNKVTEKGKPAPKPLNVLDVMKHQPYQLN SSLFTYGPAAEKLAAEKETAEKFAAQEAAEARAQNQAQAQPQAPDPYAFISQQHQPPQQP YAMSVPSPAMHDGPYHHTPNSYQPTPNAYQQVPHQQIYNPPNACQQPPSSSYQQSPSIPY QQPPSYQAGQYPASQVPCYQPAPASYVVPTCPVAGRVDSATGSSTLAAPKPKFSAKKSDA QVWKPSAAESVDK NT seq 4542 nt NT seq  +upstreamnt  +downstreamnt atgagcgcgcaggattacgcatgcgtgacggtgcggggtcgcgcgccctggggcttccag ctacgccaaagtgacacggagtcgcaccgatgtgttcaggtgcaccaggttgaagaaggc agccatgcatccatggctggtctgtgtaaggatgatgaactcgtgtctgttaatggagta tcttgctccagcctcagccttgcagaagttattgttctcattgagaaagccactgacctc ctacaactgctggtaaaaagatgctgtttatatcctcaacagaagtctcagtcagttaac accacactccaggcttcctggaaggaattgagggagccctacaaatctgagcatcagctc gaaacacattatgaagagacaaacagtgatacagagtgccctgcagggaacaccatggtc cgaacccagttttgcattccagctcccaaggatagagctggaacagacccctttgactct agtgatagagggcccaggtttgaaatcactccaggagctgtagtggaattgcagttgtca ctctctcagaccaccctggaagacacaggctgtacctcattaggaagtgctcgtggagtt aaaggagaattgtgccatcaaccaaacactgaaaatgatgagtgcaccacgagtgcacca ggccgctctttctatatacccctgcatgagagagagcctctgggtcagcgaggcgtgctt gtcagttctccttctgctttgctgggacaggtggaggttaccatacagccatctgggagg gaatctggaacagaaagagtgggggccggtgggactgaggcaacagctaatgaacaacag gattatgctgaaggagaaggagggtacactgacgaagatcccacctccttctctgtctcc tttggaattccatcagaagaggaggactctgagtcagagagggagctcaacaagccaaac aagcaccgggcaaggcacgccaggctccgccgaagtgaaagcctgtctgagaagcaggtg aaggaggccaagtctaaatgcaagcgtatagccctcctcctgactactgctgcccccaac cctaataacaagggtttgttaatgttcaagaaacatagacaaagggcaaagcagtacaca cttgtaagctacggaactggagagaatgagccagaatttgaggatgaagacgatgactac aatgacaaggaaacacatgctgttgagttcacagttctagccaccagtgaaactgaaatt gatgaagattttttcacaaattcctcaggccagaagaatattgtaacctttgatttggat actggactgctcgagatagagcgcaagcttcacaaccaagaggacatgaatgcactccct gaaaccaagggcaaaggagccctgatgtttgcacagcgcagacaacgtattgatgaaata gcagctgaacatgatgagatgagaagtaaaggtattcctgttgaaggtatacaggaagct gagaaaatctaccaacaggtgaatcagcactcttgcattcagactaatgacagccagaat tacactgatgtaaatgtgtatcaccaacagcaacctcagcagtaccaacaataccaagaa cagcattatcaacagcaacagcagcatcaatatcaagaataccaacagcagatgcagtac catcagcagcaacagtattaccagcaacagcaggaatgccagcaagagcaacaaaatcag cctcaacagtaccaacaacagcagcaaatgcaacaatactttcataatatgaatggtgtg tctagtcaccaaacaaatgtagtgcaatcatcagtcattaatagaagtgctaaaccgttc tcagttcagaatagagcagcagccccatttcccccttctgtgaaccaacagcagacgtat tattcagatggacaaggggaacaaattgctaccagagatgagcgaatttctgtacctgca ataaaaacagggatcttacaagatacaaggagaaaaaacaaagctaaacccatgttcact tttaaagagcctcaaaaagtttccccaaatccagagctgctgaatcttctcaacaggaat gacaagaaggcaggctttgattctggtatggaggaggattatctaagcttgggggcagag gcctgcaactttttacaatccactaaactaaagaacaaaactccaccaccagttgctccc aaacctcacatacaccaagttactcctgtatggtcaccacaaccagaaactgcaaaccgg caatttcagcaagatgttgaaaataatatccctgtaactaccagggatcctgtccctgaa atggagtccacagtcataccagaggaagagccctccacagcacctgcttctgatcaacat gaagcttctactaaactctgctcagaggttcaaccagaagcaatcaatgcatggggtcta tctgagacacaaatacaattaggtcagcaaataggtacttggcatgaaaatccatcccag ccacagttacatgcaaagccagagccagctgttagctcttggggtccatcttcaactgag gctctagagcagccaccagtaactgcttggggtccagcagaggttccatcacaagtcctt gctcagaatcagccacagatgcatccaccttgggtgacacaatctcaagtcctttcagaa gtggaaccacccacatcttttcaaacacagtcacagccccagccttcctgggtgacacaa aatcaacaacaacatcaaccccactctcagtctcaaattaatacatgggtaacagctcca attcaatcagcacaccaacccccatgggcccaaaatcaagtgccacgacaggcatctgtc agcacttggtctcaagatctaaatcaaccccaagtacagccatcctggacccaacagcaa caagaatctcaaccaataccaccttggacagcctctcaacagcatccccagtccccttgg aatcaacctcagagccagccacagcctcaaccaacttgggtctctcagacccaacagcaa accttgccacaaccaccagttaatacatggaatcaatctcagagtctagttcaaacacaa cctccatggactcatcaggctcaaccatcctctcagccttcagcacaaatgcagcagcaa cagaatccttggacctcagtccccccccagttacaaccacaaccaacatgggcacaacag actcaagagcatccacagcaaacaatgaattcatgggtaccagagcagaacaaaatacag cccccctggaatcagccacaatctccaactcaggcacaacctccatggtctcatccacct cagcaacagacaccactacagtctcagtttcaaacaactttaagtacatggacaccacaa ccccagcaaggtccagtcattaccatgggttctactgaaagtcagaagctggctcagcca tccaaaccatggagtccacctcagaccactgaacctcctcctccacatcaactgaactca aatacacccagatcaaaggtaccttcacaaatgcctggaatgggttcagcctctagaatg ggttcagcttttgagatgccagccttgcgagggaaaggtgctgaactttttgctaagagg caatccagaatggaaaagtatgtggtggattcttctacagtgcaggctaacaaggcaaga tctttgtcaccttctccttctttaccagcctcatggaaatattcatctaattgtcgagct cctccacctttggcatacaatccactacagtcaccctcatatccactaggtgctatcaag caacctccctctacgagccctacattaaagaacaaaaataaagtcactgagaaaggaaaa cctgcacccaaaccacttaatgttttggatgtcatgaagcaccaaccttaccaactaaat tcctcccttttcacctatgggccagcagcagaaaaacttgctgcagaaaaagaaaccgct gaaaagtttgctgctcaagaagcagctgaagcccgagctcaaaaccaagcccaagctcag cctcaagctcctgacccctatgcttttatatcacagcaacaccagccaccccagcagccc tatgctatgtctgttccctctcctgctatgcatgatggcccttatcaccacactcctaac agctaccagcctacccccaatgcttatcaacaagtcccccatcagcaaatatataatcca ccaaatgcttgccaacaacctccttccagttcttaccaacaatcaccaagtattccctac cagcagcccccttcatatcaagctggccaatatccagcttcccaagtaccatgctaccaa ccagctccagcctcttatgtagtgcctacttgtccagtagcaggaagagtagattcagct acaggaagtagcacccttgctgctccaaaaccaaagttctcagccaaaaaaagtgatgca caggtgtggaagcctagtgcagctgaaagtgtagataaatag

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