Ictalurus punctatus (channel catfish): 108267889
Help
Entry
108267889 CDS
T04658
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108267889 (rc3h1b)
04121 Ubiquitin system [BR:
ipu04121
]
108267889 (rc3h1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
108267889 (rc3h1b)
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108267889 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
FYVE
Baculo_IE-1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
108267889
NCBI-ProteinID:
XP_017327868
Ensembl:
ENSIPUG00000009135
UniProt:
A0A2D0RBF0
LinkDB
All DBs
Position
7:complement(9996915..10011761)
Genome browser
AA seq
1122 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGAQVPKLQPVALISSPEDTEHYDEARQCVEELALYLKPLSSARGMG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTEQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAPRLPCGPSLLPDEGVPLDGVTRKPSP
LTNGIVASCPAPQLLARGHDPSPYDLMRKPKMDSLSAPGSPPDSYDFNLDKSGLPPHAVA
HPRAEHLPMPKQIPGVPRGAPPLYPQQPELFYPEARAPSGAQYDAQYSAGTPYPYQPTQY
VPPRYIRNPLSSGDAPYQDPYSAYGPDRQYPPPHHSGPPFSGVSTHPYPPPSHYDTRRHG
PYAAPPPPPPPQPFGPPRDELVRMSPVSLDAPPTPGAPSSLYHAEVASRERYPPEGYYHP
PAPHPGQIRSHIRDPYGRSQPSLDYLHRRRKELLNQLEERKVISPPPFAASPTLPSHTFP
NDYPQEAQYIEDGSKAFGTREPDYAGQYSPWSCDTIGSYIGSKDPKPKDGVSAGAVEMMN
TEGKGLREPPLDGQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAMAS
SQASGSKHVTTAADYSYGNHGGGWSSVSYPPGHFSERLPAVSMSTPEREQLKMELQQVNQ
QISQQTQIRSMELSSSQICAQAASNSVLLQREASALNTQPPGAKWPVGGGTVSSEQLSLE
LHHVEREIGKRTREIAMENQVAQEVQYKLKATENGQIDHKAQLEELSLSLGDVSNGVGSV
APANSVGGAMLSLTNKTSSLNLCSGDQVGSGSELQKNGVVRS
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtccaagcgccgcaatggaccgagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtgcggcggcccataagcctcggctgtggccacactgtctgcaagatg
tgcctgaacaagctgcaccgcaaggcctgccccttcgaccagacggctatcaacaccgac
atcgagcagctgcccgtcaactcggccctgctgcagctcgtcggggcacaggtgcccaaa
ctgcagcctgtggcactcattagtagtccggaagacactgagcattacgatgaggcgcgg
cagtgcgtggaggagctcgccctctacctcaaacctctcagcagcgcaagaggcatgggg
ttgagtaacgcagcacagagcatgctcagcagacccatgcagaggaagctggtgaccctg
gtgcactgccagctggtggaggaagagggccgggtgcgtgccatgcgtgccgctcgctcg
ctgggagaacgcactgtcaccgagctcatcctgcagcaccaaaacccccagcagctctcc
tccaacctgtgggctgctgtccgcgccaggggctgccagtttctaggaccagccatgcag
gaggaggccttgaaactggtactgctggcactggaggacggatctgctctgtccaggaag
gtgctggtgctgttcgtggtgcagcgtctggagcccagattcccacaggcctccaaaacc
agcattggacacgtggttcagctgctttaccgcgcgtcttgctttaaagtgaccaagaga
gacgaggactcgtcgctgatgcagctgaaagaggagtttcgaacgtacgaggctctgcgg
agggagcacgactctcagattgtccagatcgccatggagggaggactgcgcatcgccccg
gaccagtggtcctctctgctctacggggatcagtcgcacaagtcccacatgcagtccatc
atcgacaagttgcagactcctgcatcattcgcgcagagcgtgcaggagctgacgatagca
ctacagaggacgggcgatcctgccaacctgaaccggctcagacctcatttagagctgctg
gccaacatcgaccccagtccagatgcgccccctccaacatgggagcagctggagaagggc
ctggtagcagtgaagacggtggtgcacggcctggtggacttcatccagaaccacagcaag
aagggcacggagcagcagcagccgccacaacacagcaagtacaaaacctacatgtgccgt
gacatgaagcagaaagggggctgcccccgaggtgccagctgtaccttcgcccactcgcag
gaagagcttgagaaataccgtaagatgaacaaacgcctggctccgagacttccctgtggt
ccctccctgctgcctgacgaaggtgttcctcttgatggcgtgacccgtaaaccctcaccc
cttaccaacggcatcgtggcgtcatgtccagcgccgcagcttttagcacgtggacacgac
ccttcgccatatgacctcatgcgcaaacccaaaatggacagcctgagcgctcctggatct
ccccctgattcgtacgactttaatttggataagtctggcctgcccccgcacgcagttgct
cacccaagggccgagcacctgcccatgcccaagcagattcccggcgtgccccgcggtgct
ccgccgctctacccacaacagcccgagcttttttatcctgaggccagagcaccatcagga
gcgcagtatgacgcccagtactctgctggtaccccgtacccctaccagccgactcagtat
gtgccaccccgctacatccgtaaccctctgtcctcgggcgatgccccgtaccaggacccg
tactctgcttatggccccgaccgccagtatccacctccacaccactctggcccacctttc
tcaggcgtcagcacccatccatacccgcccccatctcactatgacacccgccgacatggc
ccatacgcagcgccacccccgccaccaccacctcagcccttcggcccgccccgagacgag
ctggtgcgcatgagccctgtgtccttagatgcgccacccactcctggggcaccctcctcc
ctctaccatgctgaggtagcatcccgagagcgatatcctccagaggggtactaccacccc
cctgcaccacatcccggccaaatccgctcccatatcagggacccgtacggccgctcccag
cccagcctggactacctgcaccgcaggcgtaaggagctgctgaaccagctggaggaaaga
aaagtaatttctcctccaccgttcgccgcctccccgactctgccctctcacaccttcccc
aacgactaccctcaggaggcacagtacatagaggatggctccaaggctttcggcacccga
gaacctgactacgccgggcagtactccccgtggtcgtgcgacaccatcggctcgtacatt
ggctccaaagatcccaaaccgaaagacggcgtgagcgctggagcggtggaaatgatgaac
acggaggggaaaggtctaagggagccgcctctggatggtcagcggcgctcggcagaagcc
aaagacgacgatcccatcattccgttcggccctctgcccactgtgtcaccgttcggtgct
atttcccgcacgtcaaagacaggctaccagaccacgggccctgtgcaggccatggcgtcc
tcgcaggcctccggctccaaacatgtcactacagcagccgactactcgtacggaaaccac
ggtggcggttggagcagtgtgtcttatcctcccggccacttcagcgagcggctgccggct
gtgtccatgtccacccccgaaagagagcagctaaagatggagctccagcaggtcaaccag
cagatcagtcagcagacgcagatccgcagcatggagctctcaagttcccaaatctgcgcg
caggccgcgagtaactccgtgctgctgcagcgagaggccagcgctctgaacactcaacct
ccgggcgctaaatggcccgtggggggtggcaccgtgtccagcgagcagctcagcctagag
cttcaccacgtcgagagagaaatcgggaagaggacacgtgaaatcgctatggagaaccag
gtggcacaggaagtccaatacaaactaaaggccactgaaaacggccagattgaccacaaa
gcccagctggaagagctctctttatcactgggcgatgtctcgaacggggtaggcagcgtg
gcacctgccaacagtgtcgggggagccatgttgtctctgaccaataagacgtcttcgctc
aacctctgctccggagaccaagtgggaagcggatcagagctccaaaagaacggcgtcgtt
cgttcttga
DBGET
integrated database retrieval system
