Ictalurus punctatus (channel catfish): 108267949
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Entry
108267949 CDS
T04658
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108267949 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
108267949 (acin1b)
03015 mRNA surveillance pathway
108267949 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108267949 (acin1b)
03041 Spliceosome [BR:
ipu03041
]
108267949 (acin1b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108267949 (acin1b)
Spliceosome [BR:
ipu03041
]
Complex C
Other components
EJC/TREX
108267949 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
108267949
NCBI-ProteinID:
XP_053537865
UniProt:
A0A9F7R7W1
LinkDB
All DBs
Position
7:24248720..24276530
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AA seq
1516 aa
AA seq
DB search
MAELEDVTLDGKPLHSLRVADLKAALEQRGLAKSGQKNALIKRLKGALMLESLQRTSTSH
PGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRMEREAREAAEADDTDSPAGPEEDDHTA
ANDSTSYTPDKHHVVASRPSVPEDGGGDQLGPPDPVALGGHRMDTSDASASHDSTDVTTA
KIWRPSFSQEEVATPSPPRAVASLSVRVVGQPERQGVPLIVPRPQQREGTAPVEAGPAHP
MPQLSQSARTQEDSDEDDDDDDDDSDEDDDWGPSARGRKNIHTPPAQRSRRKLQPPQHIP
PRHSPLQLRQPTPPPSPPPELSFPLPDTPKQSPPEQDEPEAPEGAAVSSPASLQRQESSS
SSRSSSPEPPSQRRPGPLSLLVRKMESEGAFDGGQKKDDEEEGETTVATGEQVEAGPGVL
VFSTGANDVHTSCDSEVVPDHQDSPQEQLPGEPESLPTMPSVTENSPQGSVEMKEAEGEQ
EESSHPDEEEKQDDQEGCSEQKEKEKKAEESFNVSSWKREREESPSRDSADFRHTSPPPS
PPALAKRARIFSEVPPPECLMSPSKLEQVSVLVSGPQHADVEMETEAPAGVPQSSPIKEH
DKEVKAEEQEPAEAHEAAEDISKPPSSLPPSPPPEEVEAEHERERSTESKREGSEERESE
IPAVRESEIPAVRESEIPAVRESEMPAEKEREMPAEKEIPADKEREIPAEKEIPAEKERE
IPTEKEIPAEKERQIPAEKERERGRQRSAASERQRSAERGRQRSAERGRQRSAERGRQRS
AERGRQRSAERGRQRSAERGRQRSAERGRQRSAVSERQRSAERGRQRSTERRRQRSAVSE
RQRSTDREGERSAEREKSRARHSSSSSQSSSSDSDSESSSSSSSGTSPQDKPRPPSQNKD
EEKKASIPDDPAEEKEKPLRDVKQATVAEPTGPVSMELQEQPESESALAHPASQEAPETS
ESRPDESTTPKAFAARKISLTTAKTEGAAVEAESGGGAGRKRRWGSSTAVTAKKPSISIT
TESLKSLIPDLKPLQEAVVDLHPDEGRFSGDEDSSQQPERDEDQGLQIRRTVTQVVPSES
QENGQKEKEEDEDEEEEQPEMEKEKPPKKPRRESLSEVAMETQEGDTKKVTPNDSVVRRS
ISQQKVAVSITIDDPVRTGRQLSPPRGKTSNIIHVCNLVRPFTLGQLKELLNRTGAVVED
GFWIDKIKSHCYVTYASTEEAVATREALHGVKWPSSNPKVLRVDFCEQKELDFHKGLLTG
EDPRAVPAPNRPAAPPPLMPPTREKEREREREREGATTNVRDQWAEREREMERRERTRSE
REWDRDKVRDFTREERETARRSRSRDRERRRKERGKSKEKKSEKKDKPEEPPAKLLDDLF
RKTKAAPCIYWLPLTEEQATQKSLERAERMKEREKRRKELQEEEDKKREEERKERARGRE
RDGGNAVSSGGGSSRPSEGEKDKERERERERERERGREKEGEKRRDSNRGRGNDSKPAGG
SRRSRSHSNPSRDRRR
NT seq
4551 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactcgaagatgttacgctagatgggaaaccgcttcattcgcttcgtgtggcg
gatttaaaagctgccttggagcaacgaggcctggccaaaagcgggcagaaaaatgcgctc
atcaagcgactaaaaggggcactcatgttggagagcctgcagcgaacctccacctctcat
cccggcctgcagcccaactcgcagataggggaggagatgagccagaacagttttattaaa
cagtacctggccaaacagcaagagctcctgcgtcagagaatggagagagaggcacgtgag
gcagccgaggcagatgatacagacagccccgcaggccctgaggaggacgatcacacagct
gccaacgacagcacctcttacacgccagacaagcatcacgttgtagcatctcggccctct
gtgccagaggatggaggaggtgatcagctgggtccaccggatccagttgctctgggaggc
cacaggatggacacaagtgatgcctcagcatcgcacgattccactgatgtaaccacagcc
aagatctggcgcccctctttctcccaggaggaggttgccactccctcacctccccgtgca
gttgcctctctttctgtgcgtgtggttggtcagccagagcgacagggtgtacccctgatt
gtaccccgcccacaacaaagagaaggaaccgcccctgtagaagcaggccctgcccatccg
atgccgcagctcagccagtctgctcgcactcaagaggacagcgatgaagatgatgatgac
gatgatgatgacagcgatgaagatgacgactggggtccttcagctcgtggaagaaagaac
atccacacacctccagcgcagcgctcgcggcgcaagcttcagccccctcaacacattcca
ccccgtcattctccactgcagctccgacagcccactcctcctccctctccccctccagag
ctctccttccccctgcctgacaccccaaaacagagtcccccagagcaggatgaacccgaa
gccccagaaggggctgctgtgtcctctccagcttccttgcagagacaagaatcaagctcc
agctccagatccagcagtcctgagcctccatcccagcgcaggcctgggccactcagcctg
ctggtgcgcaaaatggaatctgagggagcttttgatggtgggcagaagaaggatgatgag
gaagagggagaaaccactgtggcaacaggagaacaggttgaggctggacctggggtgctt
gtattttctacaggagcaaatgatgttcacaccagctgtgattctgaggtggttcctgat
catcaagattcacctcaagagcagctgcctggggagcctgagtctctgcccactatgccc
tctgtcactgaaaacagccctcaggggtcagtggagatgaaagaagccgagggggaacaa
gaagaaagttctcacccagacgaggaagagaagcaagatgaccaggagggctgtagtgag
cagaaggaaaaggagaagaaggctgaggagagctttaatgtatcatcatggaaacgtgag
cgagaggaatcgccgtctagggattccgccgacttccgtcacacatcgcctcccccttcc
ccacctgctcttgcaaaacgagcacgtatcttctctgaagttcccccacccgaatgcctc
atgtctccttccaaactggagcaggtgtcagtccttgtgtcagggccgcagcatgcagat
gttgaaatggagactgaagctcccgctggagtccctcagtcctcacccataaaggagcac
gacaaggaggtgaaagcagaggagcaggaacctgcagaggcacatgaagcagcagaagac
ataagtaagcctccttcgtcacttcctccatctccaccaccagaggaagtggaagctgag
cacgaaagagagagatctacagagagcaaaagagagggatctgaagagagagaaagcgag
atacctgcagtgagagaaagcgagatacctgcagtgagagaaagcgagatacctgcagtg
agagaaagcgagatgcctgcagagaaagaaagagagatgcccgcagagaaagagatacca
gcagataaagaaagagagatccctgcagagaaagagataccagcagagaaagaaagagag
atacccacagagaaggagataccagcagagaaagaaagacagataccagcagagaaagaa
agagagagaggaaggcagagatctgctgcgagcgaaaggcagaggtccgcagagagagga
aggcagaggtccgcagagagaggaaggcagaggtccgcagagagaggaaggcagaggtcc
gcagagagaggaaggcagaggtccgcagagagaggaaggcagaggtccgcagagagagga
aggcagaggtccgcagagagaggaaggcagaggtccgcagtgagtgaaaggcagagatcc
gcagagagaggaaggcagaggtccacagagagaagacggcagaggtctgcagtgagtgaa
aggcagaggtccacagacagagaaggagagagatccgcagagagggaaaaatcacgtgca
cgacactcatcctcctccagccagtcttcatcctctgactctgattcagaatcctcttcc
tccagttcctcaggcacctccccacaggacaaacccaggccacccagtcagaataaggat
gaagagaagaaagcaagcatcccagatgatccagcagaggagaaggaaaaacctttgagg
gatgtaaagcaggccacggttgccgagcccacaggtcccgtctctatggagctccaggaa
caacccgagtccgagagtgcactggctcatcctgcctcacaggaggcgcctgagaccagc
gagtcccgtcccgatgagagcaccactccaaaagcctttgctgcacgcaagatttcactt
acgactgctaagacagagggagcggcagtggaggcggagtctgggggcggggctggtagg
aagaggcggtggggctccagtacagcagtcactgccaaaaagccctcaatcagcatcacc
actgaatcactgaagtctttaatcccagaccttaagccgctgcaagaggccgtcgtggac
ctgcacccagacgagggtcgtttctccggggacgaggactctagtcagcagcctgagcgt
gatgaggaccaggggcttcagatcagacgtactgtaacacaggtggttccatctgaaagt
caagagaatgggcagaaagaaaaggaggaggatgaagacgaggaggaagagcagccagaa
atggagaaggagaaacccccaaagaaaccaaggagggagagcttgtcagaggttgccatg
gaaacacaggagggtgacactaagaaggtgacccctaacgactcagtggtgcggcgctcc
atcagtcagcagaaagtggctgtgtccatcaccatcgatgacccggtgcgcacaggccgt
cagctctctcctccccgtggcaaaacatccaacatcatccatgtctgcaacctggttcgc
ccctttaccttaggccagctgaaggagctgttgaatcggaccggtgcggtggtggaggac
ggcttctggatcgataaaatcaaatcccactgctacgtcacctatgccagtacagaggag
gctgttgcaacacgtgaagctctccacggcgtgaaatggccctctagcaaccccaaagtg
ctccgtgtggacttctgtgagcagaaggagctggacttccataaagggctgctgactggt
gaagatccacgagctgttccagcccctaaccgccccgcagcccctcctccactcatgccc
ccgacacgggagaaagagcgcgagcgtgagcgcgagagagagggagcaactacgaacgtg
agggaccagtgggccgagagggagcgagagatggagcgcagagaaaggacgcgatcggag
agggagtgggacagagacaaagtgcgagacttcaccagggaggaaagggaaacagccagg
agatcacgatcgcgtgaccgggagaggagacgcaaggagcgaggaaagagcaaagagaag
aagtctgagaaaaaagataaaccagaggagcctcctgccaaacttctggatgatctgttc
cgcaaaaccaaagcagctccatgtatttactggctgccacttactgaagaacaggcgact
cagaagagcctggaacgagcggagaggatgaaggagcgggagaagaggaggaaggagctc
caggaggaggaggacaagaagcgtgaggaggagaggaaggagagggcacgaggccgagag
agagacggagggaatgcagtgagcagcgggggtggctcaagccgtccatctgaaggagag
aaggacaaagagagggagagggaaagagagagggagcgggaacggggtagagagaaagag
ggagagaaaaggagagacagcaacagaggccgaggcaacgactccaagccagcggggggc
agcagacgctcacgaagccacagcaatccctccagggacagaaggcgttga
DBGET
integrated database retrieval system
