Ictalurus punctatus (channel catfish): 108268163
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Entry
108268163 CDS
T04658
Symbol
smarcd3b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3b isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108268163 (smarcd3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108268163 (smarcd3b)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108268163 (smarcd3b)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108268163 (smarcd3b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108268163 (smarcd3b)
PBAF complex
108268163 (smarcd3b)
GBAF(ncBAF) complex
108268163 (smarcd3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
108268163
NCBI-ProteinID:
XP_017328447
Ensembl:
ENSIPUG00000005904
UniProt:
A0A2D0RD26
LinkDB
All DBs
Position
7:complement(7312440..7359691)
Genome browser
AA seq
518 aa
AA seq
DB search
MASEETAGGARKATKSKLFEFLVHGVRPGMPSGPRMPHQGAPMGPPGPPYGGNSTVRPGL
TNPPMETNRKRPAPSQQHMQQQQQQQQAVQNRNRKKPVGFPGASEVPGRQMDMREAQSDP
TLGSNTKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMK
QKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLDDPGKVKRKFSSFFKSLVIEL
DKDLYGPDNHLVELLSSGAQWHRTPTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKL
DPRLARLLGIHTQTRSCIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEI
PQRLTNLLLPPDPIVINHIISVDPNDQKKTACYDIDVEVEDPLKAQMSNFLLSTANQQEI
ASLDNKIHETIESINQLKIQRDFMLSFSRDPKGYIQDWLKSQSRDLKLMTDVVGNPEEER
RAEFYYQPWSQEAVSRYFYCKIQQRRQELEQALALRNT
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagaggagacggctggaggggcacgcaaagccaccaagagcaaactgttcgag
ttcctcgtccatggagtgcgtcccggtatgccatcaggaccacggatgccccatcagggg
gcgccaatgggtcctccaggcccaccgtacggaggaaactctactgttcgccctgggctc
accaatccgccaatggagaccaaccgcaaaaggcccgccccctctcaacaacacatgcaa
cagcagcagcaacagcagcaagcggtacagaacagaaacaggaagaagccggtgggattt
cctggagccagtgaggtgccagggaggcagatggacatgagagaggcccaatcagatccc
acactcggatcaaacaccaagaggaggaaaatggctgataagattcttccacaaaggatc
cgtgaactagtcccagagtcccaggcttatatggacctgctggcctttgagcgcaaactg
gatcaaaccataatgcgcaagcgggtggacatccaggaagcactgaaacgacccatgaag
caaaagcgcaaactgcgactctacatctccaacaccttcaacccagccaagcctgacgca
gaagactcggacggcagcattgcgtcctgggagctacgggtggagggaaagttacttgac
gacccaggaaaagtgaaaaggaagttttcatccttctttaagagcctggtgattgagctg
gacaaagatctgtatggaccagacaaccatctagtagagctgctgagcagcggagctcag
tggcatcgcactcccaccactcaggagaccgatggcttccaggtgaaaaggccaggcgat
gtcaatgtacgctgcactctgctgttaatgctggattatcagccgcctcagttcaagttg
gatccgcggcttgctcggctgttgggtatccacactcagacacgctcgtgcatcatccag
gctctgtggcagtacatcaaaaccaacaagctgcaggactcccatgacaaggagtacatc
aactgtgataaatactttcagcagatttttgactgccctcgtctgaagttctccgagatc
cctcagcgcctgactaacctgctgcttccccctgaccccattgtcataaaccacatcatc
agtgtggacccaaacgatcagaagaaaacagcctgctacgatatagacgtcgaagtggag
gatccactcaaagcccaaatgagcaacttcctgctctcgacagccaatcagcaggagatt
gcctctcttgacaacaaaatccatgagactatcgagtccatcaaccagctgaagattcag
agagacttcatgctcagtttctcccgcgatcccaaaggttacatccaggactggctgaaa
tcccagagcagagatctcaaactgatgacggacgtcgtcgggaatcccgaggaggagagg
cgggcggagttttactaccagccctggtctcaggaggcggtcagtcgctacttctactgc
aagattcaacagagaaggcaagagctggaacaagccctggctctgaggaatacctag
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