Ictalurus punctatus (channel catfish): 108268457
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Entry
108268457 CDS
T04658
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04110
Cell cycle
ipu04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
108268457 (smc1b)
04114 Oocyte meiosis
108268457 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108268457 (smc1b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
108268457 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
108268457 (smc1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
Motif
Other DBs
NCBI-GeneID:
108268457
NCBI-ProteinID:
XP_017328943
Ensembl:
ENSIPUG00000011084
UniProt:
A0A2D0REJ4
LinkDB
All DBs
Position
8:complement(20723981..20738530)
Genome browser
AA seq
1235 aa
AA seq
DB search
MGYLKQIDVENFKSWRGKQTIGPFKRFTCIIGTNGSGKSNVMDALGFVMGERASSLRVKQ
TKDLIHGAHVNKPVSRTASVTMRFCDDNDEETVFSRTISGDASEYRVNGRQVTLARYTTE
LEKIGIVVKARNCLVFQGAVESIAMMNAKERTKMFERISSSFELANEYDTKLVALQEAKE
DTQFHFNRKRAAAAEKKQIFKDKTEAEKYQALVEQLRESKLQLSLFQLYHNERVVNVLVE
SLREKQEAVAVKKSVVEEWEQTVKAQKKEHGRLSRELQKVEKEIKSQEETLSHQRPQYIR
AKVNTSHHHRKAEEMRISLLKSQKQWAKKEQELQELETELAELERAWRVYERETEEQAAQ
RGEDVQLEEAQLERYKELKELARKKGAVLFQKAEKLHWEVKADREKLEFDKRRKSEVEAN
IKHAEDHQDELNRRAGKLEEYAITSNKALDEQREQERSLGEMLERGRLRTLELNEELGMV
VRELQNARIDSQENRRQRRRDEIFESLRRLYPDVVYGRLMDLCQPIHKKYQLAVTKVFGH
YMNAIVVSSAKVGRDCIQIIKEERAERETFLPIDNLDVKPLNERLREVRGAKMLVDVVQC
SQNAPQLKRVVQFVCGNSLVCENLKDARHVAFDGPERLKTVSLDGTLFSKSGVISGGSVH
LRYKARRWEEKDMNGLKERKEQLSAELRELIKLKRKEVELHQITAQAQGIQTRLKYSNSE
LESIRKKSIPASQAEISRLESELWNLKSQIEMQISNVRVKDSEVTALQDEVNHVEDTVFL
DFCAEIGVANIREYEQDYVRQQGEIENKRLQFESQRTRLNTQVEYEQEQLHKQRRLITKM
EDSIKKEEDVILTLKEEEKKLLAAVDESQSKLLDLKNKEMEQKSCVNKAKAELDKSISGL
QENSRELVKQQKEMISVETALEHQRLCKHNLLLGCKIEGLPLTVLSGSLDDISDIQLDSE
SVGTSTQDVYVREGQMVIDYSPLGDNLKSLIGEQQVTAQLEVLREKVSSMDRLIHVSKPP
NMKALEKMIEVKDSFRGVVDAFEASTSVAKKRHQEFEQVKARRFHCFSQCFEHVSVAISQ
IYKDLCRNDSAQATLSAENPDEPYLGGITYNCVAPGKRFMAMDNLSGGEKSIAALALVFA
VHSFRPAPFFVLDEVDAALDNTNIGKVTSFIREQSRNNFQVIVISLKEEFYSRSDALLGV
YSEFNDCISSHLLSLDLSPYPLNDENGREREMDVM
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgggctacttaaagcagatagacgtggaaaatttcaagtcatggagaggaaagcagaca
ataggtccgtttaagaggtttacttgtatcattggtactaatggttcaggtaaatcgaat
gtgatggatgctctggggtttgtgatgggagagagagcctccagtctgcgagtgaagcaa
accaaagacctgattcacggcgcccacgtcaataaaccggtctcgcgcaccgcctcggtt
actatgcgcttctgcgacgataacgacgaagaaacggtcttcagcagaactatatcaggt
gacgcctctgaataccgagtcaacggcaggcaggtgacactggccaggtacacaaccgag
ctggagaagataggcatcgtggtgaaagccaggaactgcttagtgtttcagggagccgtg
gagtctatagctatgatgaacgcgaaggaacgcacaaagatgtttgaacgcattagtagc
tctttcgagctggcgaacgagtacgacaccaagctggtggctttgcaggaagcaaaagag
gacacacagttccattttaatcgcaaacgagcagccgctgcagagaagaagcagattttc
aaggacaaaactgaggcagagaaatatcaggcactggtggagcagctcagggaaagcaag
ctgcaactcagccttttccagctatatcacaatgagagggttgttaacgtgctcgtggag
tctctgagagagaaacaggaggctgtggctgtcaaaaagagcgtagtggaggagtgggag
caaactgtgaaggctcagaagaaagagcatggacgcctgagccgagaactgcagaaagta
gagaaggagatcaaatcccaggaggaaaccctcagccatcagaggcctcagtatatcagg
gccaaagtgaacaccagtcaccaccatcgcaaggccgaggagatgcgcatcagcctgctg
aagagccagaagcagtgggccaagaaggagcaggagctgcaggagctggagacggagcta
gccgagctggagagggcctggagagtttatgagagagagacagaagaacaggcagctcag
aggggcgaggacgtgcagctggaagaagctcagctggagcgttataaggagctgaaggaa
ctggccaggaagaagggggcagtcttatttcagaaagcggagaaactacactgggaggtg
aaggctgatcgggaaaagctggagtttgacaaaagacgaaaaagtgaagttgaggcaaac
attaagcatgctgaagatcatcaggacgagttaaacaggagggcagggaaactggaagag
tatgccatcacctctaacaaagctctggatgagcagcgggagcaggagcggagtttgggg
gagatgttggaacgcggacggttgcggacgctggagctgaacgaggaactgggaatggta
gtgcgggaacttcagaacgctcgcatcgacagccaggagaatcggagacagcggagacga
gacgagatcttcgagagcctgcgcagactctacccggacgttgtgtatggacgcttgatg
gacttgtgtcagcccatccacaagaaataccagctcgctgtcacaaaggtgtttggccat
tacatgaacgccatcgtggtgtcctctgcaaaagtgggccgtgactgcattcagattata
aaagaggagagagctgagcgagagaccttcctccctattgacaacctggatgtaaagcca
ctaaacgagcgtctcagggaggtgcgtggagccaagatgttggtggacgtggtgcaatgt
tcccagaatgcacctcagttgaaaagagtggtgcagtttgtatgtgggaattccctcgtg
tgcgagaacctgaaagatgcccgccacgtcgcgtttgacggccccgagcgccttaagacc
gtgtctttggacggtaccttgttctccaagtcgggggttatctctggtggctctgttcac
ctgcgctataaagctcggcgctgggaggagaaggacatgaacggcctgaaagagcggaag
gagcagcttagtgcggagctgagggaactaataaaactgaaacgcaaggaggttgaacta
catcagatcacagcccaggcccagggaatccagactcgcctcaaatactccaactctgag
ctggagtctatccgcaaaaaaagcatcccggcctcccaggcggaaatctctagactggaa
agtgagctctggaacctgaagtctcagatcgagatgcagatcagtaacgtgcgagtgaag
gacagcgaggtgactgccctccaggatgaagtcaatcacgtggaggacacagtcttctta
gacttctgtgctgagatcggagtagccaacattcgcgaatacgagcaggattatgtgaga
cagcaaggagaaatcgagaataagcggctgcagtttgagtcccagcgcacccgtctgaac
acacaagtggagtacgagcaggagcagctgcacaagcagcgcaggctgatcaccaaaatg
gaggactccatcaagaaagaggaagatgtcatcctcacattgaaagaggaggaaaagaag
ctgcttgctgcagtagacgagtctcagtcgaagctcttagacttaaagaataaggagatg
gaacagaagtcttgcgttaataaagcgaaggctgagttggataagagcatcagtggcctt
caagagaactccagggaactggtaaaacagcagaaggagatgatctctgtggaaacggca
ttggagcatcagagactttgcaaacacaacctgctgctgggctgcaaaatcgagggcctg
cccctcaccgtgctctcaggatcactggacgacatcagtgacatccagctggactctgaa
tctgtaggcacctccacacaagacgtttatgtgcgagaaggacagatggtgattgactat
agcccactgggagataacctgaagagcctgattggggagcagcaggtgacggcccagcta
gaggtgctgagagagaaagtgtcgtctatggacagactgatccatgtgtccaaaccaccc
aatatgaaggccctggagaagatgattgaggtgaaggacagcttccgtggagtggtggat
gcgtttgaggccagcacaagcgtagctaagaaacgccatcaggagttcgagcaagtgaag
gccagacgcttccattgcttcagccagtgcttcgagcacgtttctgtcgccatcagccaa
atctacaaagacctctgcaggaacgacagcgctcaagcgactctgagtgcagaaaatcct
gatgagccttacctgggtggtatcacttataactgcgtggcacctgggaagagatttatg
gccatggacaacctgtcaggaggagagaagtcaatcgcagcccttgcgctggtgtttgct
gttcacagcttccgtcctgctccgttctttgtgctggatgaggtggacgctgctttggac
aacacaaacattggcaaggtgacgagcttcattagggaacagtcgagaaataactttcag
gtcattgtcatctcactgaaggaggagttctattcacggtcagatgctctgctgggggtc
tattctgagttcaatgactgcatatccagccacctcctgtcactggacctcagtccgtac
cccctcaacgacgagaacggcagagagagagagatggacgtgatgtaa
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