Ictalurus punctatus (channel catfish): 108268854
Help
Entry
108268854 CDS
T04658
Name
(RefSeq) cleavage stimulation factor subunit 2 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108268854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108268854
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
108268854
U7-dependent histone pre-mRNA processing factors
108268854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CSTF2_hinge
RRM_1
CSTF_C
RRM_7
Motif
Other DBs
NCBI-GeneID:
108268854
NCBI-ProteinID:
XP_017329612
Ensembl:
ENSIPUG00000017839
UniProt:
A0A2D0RGE0
LinkDB
All DBs
Position
8:complement(6121034..6139252)
Genome browser
AA seq
523 aa
AA seq
DB search
MANVATAMAAVAGRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRET
GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGTGAPIIES
PYGDSCPAEEAPESISRAVASLPPEQMFELMKQMKLCVQNSPQEARNMLLQNPQLAYALL
QAQVVMRIVDPEIALKMLHRQASVPPVNPNSQSGPLPVSNQPHAQPSAPVSQPQAMPGMH
VNGAPQMMPPSQMGGGVPGPMAGQGPMPGQGPMPGPGPLGPGGGMQPQMGIPQGGPVPMD
RGAGNLQDSPVGSSGPAAIERPQVPMVDPRAPMRGAPPGPQGIPPRGLLGDGPNDPRGGS
LVNVGGEVVEPRGYIGGPPPHQGPPMHMAPPDMRGPHDMRGAPMLGEPRGPMMDQRGPPM
DSRAPIPPGRDPRAVETRGPVGGQRVPVAGGMQGAPSHAIPSNAPPSARPGPAPEVSSQD
HEKAALIMQVLQLTPEQIAMLPPEQRQSILILKEQIQKTAGAP
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgtagcaacagccatggccgcggttgcgggaagagaccctgctgtagaccgc
tctttaagatctgtctttgtggggaatattccatatgaagcaacagaagagcagctgaaa
gacatcttctcagaagttgggcttgttgtcagtttcaggttggtatatgacagagaaaca
ggaaaaccaaaaggttatggcttctgtgagtaccaggaccaggaaaccgcactcagtgcc
atgcgcaacctcaatggtcgagagttcagtggccgagctctgcgtgtggacaatgccgcc
agcgagaaaaacaaagaagagctcaagagtttgggcactggagctcccatcattgagtca
ccgtatggagacagctgcccagctgaggaggcccctgagtccattagcagagctgtggct
agcctgccgccggagcagatgtttgagcttatgaaacagatgaaactgtgtgtgcagaac
agtcctcaggaggctaggaacatgctcctgcagaatccacagctagcctatgcactgctg
caggctcaggtcgtcatgaggatcgtagaccctgagattgccttgaaaatgcttcatcgg
caagcttctgtgccacccgtaaacccaaacagccagtcagggcctttgccagtgtctaac
cagcctcatgctcagcctagtgcgccagtgtctcagcctcaggccatgccaggaatgcat
gtgaatggtgctccccagatgatgccaccttctcagatgggcggtggagtgccagggcca
atggcaggacaggggccaatgccgggacaaggccctatgccaggaccggggcctctggga
ccaggaggtggaatgcagcctcagatggggatcccccaaggaggccctgttcctatggat
aggggtgcaggaaaccttcaggactctcctgtaggatcatctgggccggctgctatcgag
cggccgcaagtgcccatggtagacccacgggctcctatgcgaggagcccctccaggaccc
caggggattccaccaagaggcctgctgggtgatggtcctaatgatccacgaggtggatca
ctagtaaacgtgggaggagaagtagtggagccccgtggttatataggaggccctccaccg
caccaggggccacccatgcatatggcccctccagatatgcgtggacctcatgacatgaga
ggagcgcccatgttgggagagcccagaggccctatgatggatcagcgtggtccacccatg
gactctagagccccaattcctccaggccgtgatcctcgagctgtagaaactcggggtcct
gtgggaggccagagggttcctgtagcaggtggaatgcagggtgctccttctcacgcaatt
ccatcaaatgctcccccatctgcccgacctggtcctgcacctgaggtgtcctctcaagat
catgaaaaggctgctctaattatgcaggtactccagctgactccagaacagatcgccatg
cttccccctgagcagaggcagagtatcctcattctgaaagagcagattcagaaaactgct
ggtgccccttga
DBGET
integrated database retrieval system
