Ictalurus punctatus (channel catfish): 108269134
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Entry
108269134 CDS
T04658
Symbol
si:dkey-219c3.2
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108269134 (si:dkey-219c3.2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108269134 (si:dkey-219c3.2)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108269134 (si:dkey-219c3.2)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108269134 (si:dkey-219c3.2)
Coactivators
SAGA/TFTC/STAGA complex
108269134 (si:dkey-219c3.2)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108269134 (si:dkey-219c3.2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
108269134
NCBI-ProteinID:
XP_017330216
Ensembl:
ENSIPUG00000005936
UniProt:
A0A2D0RJ95
LinkDB
All DBs
Position
8:complement(17306136..17354993)
Genome browser
AA seq
1016 aa
AA seq
DB search
MHFAAKQRTRTTRSIERLPKMAGVPDPLEDMLYSEVDEKAVSDLVGSLESELGGQNKPQS
EAQRSGAPESGNNNLGKAQAAQAGTALEARASGLHRVEVKRENGSERTPSSNSVPVPSAL
NAGGMMATNRVQPNITLVPKPAVPGLATSPNCSSDAAVVASSSSSSSPSSSSATDTLPNT
NHIASTIRAVSSRALAGENGSNATVALSSAPAPVAGLQTGVNGAVIGSGSGLGTDNSNTS
TSKGTNGTFLGTSVQPSNHILPQPVSVSAAQTVPAVALHRPINIAPSHSDPKLAVPVSVA
SVPAPTLTFSNASLIKTNPQTQIKTIVPNQLAGSPVALRPPVTGTAVHSGAVSTPLPVAS
SPSVLVKPEAGLTGQAAGMLRPTTPSPATSTVPVRPGVPAAPAPRAVVPQLTVRPQQQTT
IQLPPGFTIPPGMVLVRTEAGQLVLVPQQVLAQAKAQNQTKATLSPTPATTTTTATIQVT
TPVQQSPVTSQAIRPIPPAQAKVVQTASPASPALQKSPLVTASTAPKPSGPTVITTSARI
QAPNQTLLKPSPTVTAPAAPTTGITNLSQEMQENVKKCKNFLATLIKLASHNSPSPETSK
NVKALVQDLLDAKIEPEEFTNRLQTELKSSPQPYLIPFLKKSLPALRMTLLNSQQSLTQL
AQTSSSPLTVSAIKAPPPRALATTVPAVRPTVTQDQATLVAVKRTGAQTGPVRMPVVITQ
SVRPQGAVVRGPVVQVRGPMGITMQASANQKQKLNDPGGGTFRDDDDINDVASMAGVNLN
EENARILATGSELVGTQIRSCKDEAFLPANLLHKRILEIARGFGVNEVMSDVVSLVSHAT
EARLRSTLENVSALARHRTDPSKDEEHHEQTSDVRTQLKFFEQLERLEKQRKDDEEREIL
LKVAKSRSRQEDPEQARLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKLDSPGAS
GAEASGSSSGSAGASSSSSRQVRQRITRVNLRDLIFCLEQERSTARSLLLYKALLK
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgcacttcgcggcaaaacaacgcacgcgcacgacacgctccatcgagcgtcttccaaag
atggcgggcgtccccgatccgctggaagatatgctgtattcagaagtggacgaaaaagcc
gtcagcgacctcgtgggttcgttagagtcggagctcggcggtcagaataaaccccagagc
gaggcgcagagatcaggagcacccgagagcggaaacaacaacttaggaaaagcccaagcc
gctcaagcgggaaccgcattggaggcgcgagcgtcaggactacacagagtggaggtaaag
cgcgagaacggctccgagaggacaccgagctccaactctgtccctgtcccttccgctctg
aacgctggggggatgatggctaccaaccgagtgcagccaaacatcacgttagtaccaaag
cccgctgtaccgggactcgcaacttctccgaactgttcaagtgacgcagcagttgtagca
tcatcatcatcatcatcatcaccatcctcatcatcagctacagatactctccctaacacc
aatcacatagcttcaactatccgcgccgtttcctccagagcgctggctggtgagaatggc
agcaatgccactgtagctctctcctctgctccagctcctgtagccggattacagaccggg
gtgaatggtgctgtcattggttctggctctggcttaggcaccgacaacagcaacacatcc
acttccaaaggcactaatgggacttttcttggtacttctgttcagccgtctaatcatata
ctgccacagcctgtgagtgtatcagctgctcagacagtccctgctgttgccctgcaccga
cctatcaacattgcacccagtcatagtgaccctaaacttgcagtgcctgtgagtgtcgcc
tctgtcccagcccccacgctgaccttttccaacgcgagtctgatcaaaacgaatccccaa
acccagattaaaaccattgtcccaaatcagcttgccggttctcccgtagccctgcggcct
cctgtaaccggtacagccgtgcactcaggtgcagtcagtaccccgcttccagtggcgagc
agcccgtcagtgctggtgaagccagaagcaggacttacaggtcaggctgcaggtatgctg
agacctactactccgtctccagcaacgagcactgtccccgtgcgacctggggttcctgct
gcacctgctccgagggcggtggtacctcagcttactgtcagacctcaacaacagaccacg
attcagttaccgccaggattcactataccaccgggaatggtgcttgtccggaccgaagcg
ggccagttggtgctggttcctcagcaggttctggcccaggcgaaggctcagaatcagacg
aaagcgactctgtctccgacgcctgcgacgaccaccactacagccaccattcaagtcacc
actcctgtgcaacaatctccagtgacatcccaagccatccgaccgattcctcctgcacag
gctaaagtggtccagacagccagccctgctagccctgctctacagaagagcccattggtg
acggcgagcactgctccaaagcccagcggccccactgtgatcacgaccagcgctcgtatt
caggctccaaaccagacactcctgaaaccttcacccaccgtcacggcacccgctgcaccc
accacgggaatcaccaacctctctcaggaaatgcaagagaatgtgaagaaatgcaagaat
ttcctagcaacgttgatcaaactggcatcccataattccccctctccggaaacttcaaag
aacgtgaaggcgctcgtgcaggacctgctggatgccaaaattgagcctgaggagtttaca
aatcgtctgcagacggagctgaaatcgtctcctcagccctacctcatcccctttctaaag
aaaagcctgcctgctctgcggatgacgctgttgaactcgcaacagtctctcacccagctc
gctcaaacctcctccagccctctgactgtgagtgccattaaggctccgcccccacgcgcc
ctcgccactacggtgccagctgtccgccccaccgtcacgcaggaccaagccaccctggtg
gctgtgaagaggacaggggcacagacggggccagttcggatgcccgtggtgatcacgcag
tcggtccggcctcaaggcgctgtggtgagaggaccagtggtacaggtgagaggtccaatg
ggcatcaccatgcaggcttcagccaatcagaaacagaagctgaatgacccaggaggtgga
actttcagggatgacgacgatatcaacgacgtggcgtccatggccggtgtgaacctgaat
gaagagaatgctcgtatattagccacaggctccgagctggtgggcacgcagatccgctcc
tgcaaggacgaggcattcctgccagctaatctgctccacaagcgcatcctcgagatcgca
cgtgggtttggtgtgaatgaggtgatgtcggacgtggtgagtttggtgtcccatgccacc
gaggccaggctccgttccacactggagaacgtctctgctctcgcacgacaccgcacagac
cccagcaaggatgaagagcaccacgagcagacatcggatgtgaggacgcagctgaagttc
ttcgagcagctggagaggctggagaaacagcgcaaagacgacgaggagagagagatcctg
ctgaaagtggccaaaagtcgctccaggcaagaagaccctgagcaggctcggctaaagcag
aaagctaaagagatgcagcagcaggaactggcacagatgagacagcgtgatgctaacctc
acggcactcgccgctataggcccacgcaaaaaacgcaaactggactctcccggggcttct
ggagcagaggcatccggaagctcttcaggctcggccggcgcctcctcgtcctccagtcgg
caggtgaggcagcggatcacgcgagtcaacctcagggacttgatcttctgcctggagcag
gagcgttccacggcccgctcactgctgctctacaaggctctgctcaagtag
DBGET
integrated database retrieval system
