Ictalurus punctatus (channel catfish): 108269953
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Entry
108269953 CDS
T04658
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108269953 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108269953 (arid1aa)
03021 Transcription machinery [BR:
ipu03021
]
108269953 (arid1aa)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108269953 (arid1aa)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
ARID
108269953 (arid1aa)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108269953 (arid1aa)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108269953 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
TEX19
Motif
Other DBs
NCBI-GeneID:
108269953
NCBI-ProteinID:
XP_017331630
Ensembl:
ENSIPUG00000016930
UniProt:
A0A2D0RNU9
LinkDB
All DBs
Position
1:complement(22580273..22607465)
Genome browser
AA seq
2257 aa
AA seq
DB search
MAAQVASATSLNSSPPSELKKADRDPKEESVPAEKQQENKDPGSEIGSPGRGELHERPEP
GNATGGGGGGGESEMKNGNGNPPRLTNNQNDPAGPEANNHPGMAHQHHGSGFPPPSYGYT
HHYARGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHDHGFPNHQFNSYGQFPNRAPYPSP
GYAMNSPRSAPAQAAKQQQQQPAGGSPTMAASYNNQRYNIANPQATSTPTLNQLLTSPSS
SRGYSNYPPSDYNNQEGANKGAADISAAAQYGGGHPGWQQRSHHPPPMSPGSTGQTLGRN
QTPGSMDQMGKMRGQPYGAGSPYTQQPHQGPPGGQQGPAYPGQGYGPPGPQRYPMAMQGR
MQYGQQVAYGQQGPGGYGQQGQQPYYSQQGPGTHPGQQQSPYPHPTQPSAPHGQGGHPYP
QSHMPQQSQGPLGVPPPGPSQSQTPYSQPPTPQSTQSPYPQQQTPQSQPPPQGASQAPPA
SQAQSNYTHSQGAQQPPSQQTPQAPTPASQQPTVQGQTSSYSQNPSQQQQSSYQRFPPPP
QEISQESFSSQSSATASSQPVASTKSSSEDMQGRPSSLPDLSGSIDDLPTGTEGALSPGV
STSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASATASRSGPLSPAAMPG
NQMPPRPPSGQSDGILHPGMNQPGMGQDRGFMQRNQMPPYGSPQSGSALSPRQSSGGQMH
GGMGPFQQNNSMGSYGPQGGQYGPQGYQRQPGYGGIPNANYPGPGMGGSMNPMSGQGGGP
PFTGMPPSRMPHAQMGGRPYGPNMGPNMGPNMGPNMGNIPPQVGSAMCPPPGLNRKPQEA
AAAMQHGSTNSIHNRMPGYPSMSPGMMGSGPPYGPSMNNMPGMMNTQGPPFPMGGNMPNN
SSGMSPGPEFGMDGKLSQPQKMNNKAEGTPKSDSKSKKSSSSTTTNEKITRLYELGSEPE
RKIWVDRYLAFIEEKAMGMSNLPAVGRKPLDLFRLYMSVKEIGGLTQVNKNKKWRELATS
LNVGTSSSAASSLKKQYIQCLYAFECKIERGEDPPPDIMSAEGKKNQAKVQPPSPAGSGS
LQGPQTPQSTSSSMAESGDLKPPTPASTPHSQMPSMQSGRSSVNLQDPFADGSDPAFSRR
NTMTPNSGYQSGMSTPEMPGRMGPYEPNKDPFSGMRKVGEPFMAGAQGPNSNLGEQFNRG
SGGPVGNMPMGQRQQYPYGTGYERRPESGMGPENNMGPGVPQPNMMPSNTDTGMYSPNRY
PSQQQRHDSYGNQFPGQGAPPGGSYPNQQPGMFPQQQTNYKRPGEGGYPPAKRHHDGEMY
GGPFGAQQPQQQPQAPPNAPSAAQPEMYNQFSSSYPGPERRPPGPQNQFPFPFGRDRMQP
GSGPNSQASMPPQMMGSSMQSGPDGPQAGMWQGRNEMGYPNYPNRQGPLGGPAQGPGYHG
MNRSEEMMSSEQRINHEGQWPGPRQPAYVPAGAGPPMSRPLQSNYQSPQAMQNHIPQVSS
PTPMPRPMESRTSPSKSPYMPSNIKMQKAGPPVPASHIIPSPVQPPMMRRDPPFPPGSVE
ATQPVLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSISNFNLI
QLPGFLELIVEYFRRCLIEIFGILREYEVGDPGQRTLLDPNALKEGENGEDEEEPVVMGM
EEDGETEEEGEGEENSSQQRVERASAVQPQIKTEKKAGDSKKDEDGKVMENILPTELKST
EAPPLDLCVTQERPKQASKFDKLPLKVVKKKDPFVVDCSSKLGRLQEFDSGLVHWSIGGG
DTTEHIQTHFESKTDLLQSGNRTKPTQTCRRKKASEKIECEAPVVPSCSVERRKEEEQTQ
PQQSSTRQLTDGVSEEKEEKPVKVPESSMEPVSQKEEEEPEGSNQETSKLALLNISTSSQ
SQHSVTVLEDEPHSKDEAPLITLSDWQDSLARRCVCVSNIVRSLSFVPGNDLEMSKHPGL
LLLLGRLVLLHHRHPERKQAPLTYEKEEEADKDIGEKDEWWWDCLELLRENCLVTLANIS
GQLDFSIYSESICLPLLDGLLHWAVCPSAEAQDPFPTLGLNAALSPQRLVLETLSKLSIQ
DNNVDLILATPPFSRLEKLFGNLVRLVGDRKVPVCREMAVVLLANLAQGDSLAARAIAVQ
KSSIGNLLGFLEDSLAATQFQQSQGSLLHMQGAHFEPTSVDMMRRAARALHALAKVEENH
SEFTLYESRLLDLSVSPLMNSSVSHVICDVLFLIGQS
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgctacctctctcaacagcagcccgccttccgagctgaaa
aaagcggaccgagacccaaaggaggagtcggtaccggccgagaagcagcaggaaaataag
gatccgggatcagagatcggatcaccgggccgcggcgagctgcacgagcggcccgagcct
ggcaatgctacgggaggaggaggaggaggaggggagtccgagatgaagaacggcaacggc
aatcctccgcggctcaccaataatcaaaatgatcctgccggacccgaagcgaataaccac
ccgggcatggcccatcagcaccacgggtccggttttccaccgccgtcctacggctacact
caccactacgcacggggcccttttcatcaacatggcggacaacaaagccctggcatggca
gccgcggcgcccagcaacatgatggaaccgtatggaccgaattcgcacgaccacggcttc
ccgaaccatcagttcaacagctacggacaatttccgaaccgagcgccgtacccgagcccg
ggctacgccatgaactctccgcgcagcgctccggctcaggcggctaagcagcagcagcag
cagccagcgggaggatctccgactatggccgcgtcctacaataatcagcgctataatatt
gcaaatccacaggccacgtccacaccgactctaaatcaactcctaacctcgccgagctcc
agccgcggatacagcaattacccgccgagcgactacaacaaccaggaaggcgctaacaag
ggagccgcggatatcagtgctgctgcccagtatggagggggccatccgggctggcaacaa
aggagccatcacccgccacccatgagcccgggaagtacgggtcaaaccctcggtagaaac
cagactccgggttcgatggatcagatggggaagatgcgaggccagccatatggcgcggga
agcccatatacccagcagccccaccaaggacctccagggggccagcagggtcctgcatat
ccaggccagggttatgggccgcctggtcctcagagatacccaatggccatgcagggtcgc
atgcagtatggccaacaggtggcatacggacagcagggaccaggtggttatgggcagcag
gggcagcagccttattacagtcagcagggcccaggcactcacccgggtcagcaacagtca
ccgtaccctcaccctacccagccatctgcacctcacggacagggtggccatccctacccg
cagtctcacatgcctcagcagtcccaggggccattgggcgtgcccccacctgggccatct
caatcccaaactccctactctcagccccctacaccacagtccactcagtccccatatcct
cagcaacagacgccccagtcccagcctcctccgcagggagcctctcaagctcctccagca
tcacaggcgcagtccaactatactcacagccaaggagcccagcaaccaccatcacaacag
accccgcaagcacctacgccagcctcccagcagcccacagtgcaagggcagacttcctca
tattcccagaatccttcgcagcagcagcagtcttcttatcagcgttttcctccccctcct
caggagatttcccaggaatcctttagctcacagtccagtgctactgcctccagtcagcct
gtggcctccactaaaagctcctccgaggacatgcagggacgaccctccagtctacctgat
ctgtcaggctctattgatgacctgcccactggtacagagggagcgctcagtcctggcgtt
agtacatctggagtgtctagcagtcagggcgaacagagcaacccagcacagtctccgttt
tcccctcacacttcccctcatctcccgggcatccgtggaccttcaccctcccctgtcggc
tcacctgctagtgccacagcatcccgctctggacccctctctccagcagcaatgccagga
aaccagatgcctccccggccccctagtggtcagtctgatggtattttgcaccctggtatg
aatcagcctggcatgggccaagatagaggattcatgcaaaggaaccaaatgccaccttat
ggctctcctcagtctggctctgcgttgtcacctcggcaatcgtctggaggtcagatgcat
ggtggaatgggaccttttcagcagaataactcaatgggcagctatgggcctcagggtggc
caatatggcccacaaggttaccaaaggcaaccaggttatggtggcatacccaatgccaac
tacccaggccctggcatgggaggatctatgaatcctatgtctggacaggggggaggccca
ccttttactggaatgccaccaagtaggatgccacatgcacagatgggtggacgaccatat
ggtcctaatatggggcccaacatgggtcctaacatgggccccaatatgggcaatatacca
ccacaggttggttctgcgatgtgccctccaccaggcctcaacaggaagccacaagaagca
gcagctgccatgcagcatggatctaccaattccatacacaacaggatgcctggttatccc
agcatgtctcctggtatgatgggctcaggacctccatatgggccctccatgaacaatatg
ccaggaatgatgaacacccagggaccacccttccccatgggtggaaacatgccaaacaac
agcagtggtatgtcccctggtccagaatttggtatggatgggaaactcagccagccacaa
aagatgaataacaaggctgaagggacacccaagtcagactccaaatccaagaagtcaagc
tcctccaccacaaccaatgagaagatcactcgtctgtatgagcttggttctgagccagaa
cggaagatttgggtggaccgttacttagcgttcattgaggagaaggcaatgggcatgagc
aacctgcctgccgtaggccgcaagcccctcgatctcttccgcctttacatgtctgttaag
gaaattggaggtctcacacaggtcaacaagaataaaaagtggcgagaacttgccaccagt
ctgaatgttggcacatccagcagtgcagctagctcactaaagaagcagtacatccagtgt
ctgtatgcttttgaatgcaagattgagcgtggagaagatccaccacctgacatcatgtct
gcagagggcaagaagaaccaggctaaggtccagccaccctccccagctggatctggttcc
ctgcagggacctcagaccccccagtccacaagcagttctatggctgagagtggggatttg
aagcctcctacacctgcttctaccccacatagccagatgccctcaatgcaaagtggcagg
agcagtgtgaaccttcaggatccatttgctgatggcagtgacccagcattctctaggaga
aacaccatgactcccaactcaggctaccagtctggcatgagcactccggagatgcctggc
cgcatgggcccttatgagcccaacaaggacccatttagtggcatgcgtaaagttggagag
cctttcatggctggtgcacagggtcctaacagcaaccttggagagcagtttaaccgtgga
tcaggaggtccagttgggaatatgcccatgggacagaggcagcagtatccatatggaaca
ggctatgagagaaggccagaatcagggatgggcccagaaaataatatgggacctggagta
ccacagccaaacatgatgccttccaacactgacactgggatgtactcgccgaatcgctac
ccatcgcagcaacagcggcacgattcctatggtaatcagtttcctggccagggtgcgcct
cctggtggctcgtacccaaatcagcaaccaggaatgtttccacagcaacagactaactac
aagagaccaggggagggaggctaccctccagcaaagcgccatcatgatggtgaaatgtat
ggcgggccatttggtgctcagcagccacagcagcagcctcaggctcctcctaatgctcct
tcagcagctcagccagaaatgtacaaccagttcagcagctcttaccctggaccagagcgg
cggcctcctggaccacaaaaccagttccctttcccttttggaagggatcgcatgcagcct
ggctcaggccccaactctcaagcgtccatgccacctcagatgatgggcagctccatgcag
tcaggtcctgatggcccccaggctggtatgtggcagggcagaaatgagatgggctacccc
aactatccaaacagacaaggaccccttggtggacctgcgcagggcccaggatatcacggc
atgaaccgatccgaagagatgatgtcatctgagcagcgtataaaccatgaaggacagtgg
ccagggccaaggcagcctgcgtacgtcccagcgggggctgggccacccatgagccgcccc
ctgcagtccaactaccagtctccacaagccatgcagaaccacattccacaggtgtccagc
cccactcccatgccccggccaatggagagcaggacatccccaagtaaatctccctacatg
cccagcaacatcaagatgcagaaggcaggtccacctgtgcccgcgtcccatatcatccct
tcacctgtacagcctccaatgatgaggagagatcctccgttccctccagggtctgtagag
gccacacagcctgttctcaagccacgcaggcgactcaccatgaaagagattggcacacca
gaggcatggagggtgatgatgtctctaaaatcgggtctgttagctgagagcacatgggct
ttagacaccattaacatcctgctgtatgatgacaacagtatctccaattttaacctcatt
cagctccctggtttcctggaactaatagtggagtattttagacgttgcctcattgagatc
tttggcattctgagggaatatgaagttggtgatccaggacagagaaccctgctagacccc
aatgctctcaaagaaggagaaaatggggaggatgaagaggagccagttgtaatgggtatg
gaggaagacggtgaaaccgaggaggagggtgaaggggaagaaaactcatcacagcagcgt
gtggaacgtgcctcagcagtgcagcctcagataaagacggagaagaaggcgggtgactca
aagaaagatgaagatggcaaagtgatggaaaacattctgcctacagagctaaaatcaaca
gaagcaccccctctagatctttgtgtgactcaggagaggccaaaacaggccagcaagttt
gacaaacttcccttgaaagtggtgaaaaagaaggatccatttgtggtagactgctccagc
aagctcggacggcttcaggagtttgacagtggtctggtgcactggagtattggtggaggt
gacactacagagcatattcagacccattttgagagcaagacagatttattgcagtcaggg
aacaggacaaagcctacccaaacgtgtagaaggaaaaaagcatcagagaagattgagtgt
gaggcacccgtagtaccctcatgtagtgtggagcgaaggaaagaggaggagcagacacaa
ccacagcagtcttctaccagacagttaaccgatggtgtctcagaagaaaaggaggagaaa
cctgtcaaagtccctgagtcttcaatggaaccagtatcacagaaagaggaagaggaacca
gaaggatcaaaccaggagaccagcaagttggctctcctcaacatcagtacttcctcacag
agtcagcattctgtcactgttctagaggatgaacctcacagcaaggacgaagccccacta
atcacgctttcagactggcaggactcacttgcccgccgctgtgtctgcgtctccaacata
gtccgcagtctttcgtttgttcctggcaatgacttggagatgtccaagcatccagggctg
cttctgctgttgggccgccttgtgctccttcatcatcgtcatcctgagcgtaaacaggcc
cctttaacgtatgagaaggaggaagaggcagacaaggacattggcgagaaggacgaatgg
tggtgggactgtttggagctgctgcgagagaactgcctggtcacgctggctaacatttca
ggtcagcttgacttttctatctactccgagagcatctgcttgcctctgcttgatggcttg
ctccactgggctgtgtgtccttctgcagaagcccaggatcccttccctactttggggctt
aatgcagctttatctcctcagagactggtcctggaaactctcagcaaactcagtatccaa
gacaataacgtggaccttattctggcaacacctccgttcagtcgactagagaagcttttt
gggaaccttgtacgtctggttggggaccgaaaggtgcctgtatgccgggagatggcagtt
gtgcttttggccaaccttgcccagggtgacagccttgcagcccgtgccattgcggtacaa
aaaagcagtatagggaaccttttgggcttccttgaggacagtttagcagccacacagttc
caacagagccaagggtccctgctgcacatgcagggggcgcactttgaacctacaagtgtg
gacatgatgcgtcgggctgctcgggctctacatgcccttgctaaggtggaggagaaccac
tcggagtttacactctatgagtcgcggctactggacctctcggtctcccctcttatgaac
tcttcagtgtcccatgtcatctgtgatgtactgtttctgattggccagtcatga
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integrated database retrieval system
