Ictalurus punctatus (channel catfish): 108271249
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Entry
108271249 CDS
T04658
Symbol
rad23ab
Name
(RefSeq) RAD23 homolog A, nucleotide excision repair protein b isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03420
Nucleotide excision repair
ipu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108271249 (rad23ab)
09124 Replication and repair
03420 Nucleotide excision repair
108271249 (rad23ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
ipu03051
]
108271249 (rad23ab)
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108271249 (rad23ab)
Proteasome [BR:
ipu03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
108271249 (rad23ab)
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
108271249 (rad23ab)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XPC-binding
UBA
ubiquitin
Rad60-SLD
Rad60-SLD_2
UBA_3
Crinkler
Dsc3_N
Ubiquitin_2
CUE
UBA_2
DUF1421
Methyltransf_10
Motif
Other DBs
NCBI-GeneID:
108271249
NCBI-ProteinID:
XP_017334177
Ensembl:
ENSIPUG00000025000
UniProt:
A0A2D0RUJ9
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All DBs
Position
10:14871354..14882885
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AA seq
468 aa
AA seq
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MLTITLKTLQQQTFKIQIDEELTVRALKEKIESEKGQDAYPIAGLKLIYAGKILNDDIPL
KEYKIEEKNFVVVMVTKPKPAAPPVVPIPLPDLSPLPLSVPAPPPSAPAASEPIPTPATA
AVPTPTVAPAPTVTPTVAPAPTVTTTAAPAPTVTPTTSPAPTVTPASAPAAIPTPTPGLV
EPVQSVEPPAPPATAPPAAAPAASVESVETECASSQAASADQPQRAEPEQPSNPTAALSA
ASIMDELGLLEEAASILVTGQAYENLVTEIMSMGYEREQVVAALRASFNNPDRAVEYLLM
GIPVEPEQPAQEAVRPAEETERPQPPPAATGATPSQAPPASANPLEFLRNQPQFQQMRQI
IQQNPALLPALLQQLGRDNPQLLQQITQHQERFVQMLNEPLGGEAEAAEAQGAPHTNYIQ
VTQQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQTFDDE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgattacgctgaaaactctacagcagcaaacctttaagatacaaatagacgaa
gagttgacggtacgagctcttaaagagaagattgaatctgaaaagggtcaggatgcatat
cccatagctggactgaagctcatctatgcaggtaaaatcttgaacgatgacataccttta
aaagaatacaaaatagaagagaagaattttgttgtggtcatggtaactaagccgaaacca
gcagctcctcccgtcgttcctattcctctccctgacctttcacctctgcccctttctgta
cctgctccccctccatctgccccagcagcttctgaacccatccccacccctgcaactgct
gctgtacccacccctacagttgcccctgcacccacagtcaccccaacagttgcccctgca
cccacagtcaccactacagctgcccctgcacccacagtcacccctacaacttctcctgca
cccacagtcactcctgcatctgcccctgccgcaatacctacacccacacctggccttgtt
gaaccagtgcagtctgtggagcctcctgctcctccagccacagcgccccctgctgctgct
cctgctgccagtgtggagtcagtggagacagagtgtgcaagctcccaggctgcatctgca
gatcagccgcagagagccgagccggagcagccatcaaaccccactgcagctctctcagct
gccagcattatggatgaactcggccttttagaggaagcagcatcaatacttgtcacagga
caggcatatgagaatttggtgacagagatcatgtccatgggatatgagagggagcaggtc
gtcgccgccttgagagcgagcttcaacaaccctgaccgagcggtggaatacttgctcatg
ggtattcctgttgagccagagcagcctgcacaggaagcagtgcgacccgcggaagaaaca
gagagacctcagcctccaccagcagccactggtgctacgccctctcaggccccacctgcc
tcagctaaccccctggagttcctgaggaaccagccgcagttccagcaaatgcgtcagatc
atccagcagaacccggcgctcctcccggccctgctgcagcaactgggccgggacaaccct
cagctcctgcagcaaatcacgcagcaccaggagcgatttgtccagatgcttaatgagccg
ctgggaggagaagcggaggcagcagaggcacagggagctcctcacactaactatatccag
gtcacacagcaggagaaagaggccatcgagaggttaaaagctttgggcttccctgaggga
ctagtcattcaggcatatttcgcctgtgaaaaaaacgagaacctagcagccaacttcctg
ctccagcagaccttcgatgacgagtga
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