Ictalurus punctatus (channel catfish): 108272150
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Entry
108272150 CDS
T04658
Symbol
snrpb
Name
(RefSeq) small nuclear ribonucleoprotein-associated proteins B and B'
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108272150 (snrpb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272150 (snrpb)
03041 Spliceosome [BR:
ipu03041
]
108272150 (snrpb)
03032 DNA replication proteins [BR:
ipu03032
]
108272150 (snrpb)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
108272150 (snrpb)
Spliceosome [BR:
ipu03041
]
Complex A
U1 snRNP components
Sm proteins
108272150 (snrpb)
U2 snRNP components
108272150 (snrpb)
Complex B
U1 snRNP components
108272150 (snrpb)
U4/U6.U5 tri-snRNP components
108272150 (snrpb)
Complex C
U2 snRNP components
108272150 (snrpb)
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
108272150 (snrpb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
108272150
NCBI-ProteinID:
XP_017335866
Ensembl:
ENSIPUG00000024569
UniProt:
W5UCM6
LinkDB
All DBs
Position
11:complement(7327461..7337533)
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AA seq
238 aa
AA seq
DB search
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPE
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPAGAPM
AQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAGASIAGAPTQYPPGRGGPPPPMGRG
APPPGMMGPPPGMRPPMGPPMGMPPGRGAPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
NT seq
717 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcggaaagagcagtaagatgcttcagcacattgactacaggatgcgctgtata
ctgcaggacgggcggatattcatcgggacgtttaaagctttcgacaagcatatgaacctc
atcctgtgtgactgcgacgagttcagaaagatcaagcccaaaaactccaagcagccagag
agggaagagaagcgagtgttgggtttggtgttgctcagaggagagaatctggtctccatg
actgttgaaggaccgcctcccaaagatactggcattgccagagtgcccctggctggggtg
gcaggtggcccaggggtgggcagagcagcaggcagaggtgtaccagctggtgctcccatg
gcccaggctcctgctggacttgctggaccagtgagaggagtcggaggcccatcacaacag
gtgatgacccctcagggcagaggcacagtggctgcagcggcggctggtgctagcatcgcc
ggtgcacccacacagtatccaccgggccgaggtggccctcctcctcccatgggcagaggt
gcaccacctccaggcatgatgggtccaccccctgggatgaggccaccaatgggccccccg
atgggcatgccaccaggccgtggtgcccctatgggcatgccccctccaggcatgagacct
ccaccaccaggaatgagagggcctcctcctccaggcatgcgccccccaagaccttga
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