Ictalurus punctatus (channel catfish): 108272549
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Entry
108272549 CDS
T04658
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40 isoform X1
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ipu01002
]
108272549
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108272549
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108272549
Peptidases and inhibitors [BR:
ipu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108272549
Ubiquitin system [BR:
ipu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108272549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
YukD
Motif
Other DBs
NCBI-GeneID:
108272549
NCBI-ProteinID:
XP_053540262
UniProt:
A0A9F7RHH6
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All DBs
Position
12:complement(17005428..17017498)
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AA seq
1244 aa
AA seq
DB search
MSMFGDLFEEEEEITTNSITQGKGKVCEPPPPRGKLKLCGIRNQGSTCYLNSLLQTLLHT
PEFREELFSLGPEELGKLEDKDKPDAKVRVIPLELQNLFARLLLLDEQTTTTTALTESFG
WTNNEEMAQQDVQELNRILFSALESSLVGTSDSSLIRRLYHGTLINNITCNECHNVSERE
EDFLDLTVCVRGVCSLEEALWSMFVEEEVFDENNLYHCSNCDRLVHATKSAKLRKLPTFL
TVSLLRFSFDFEKCERFKETRRYSFPLSINLRPFCEQSDQPDSELTYELFSIIIHKGGCY
GGHYHAYIKDIDHLGHWELPEDDIKQKKQKVQVKPPSMSVCNAAVEKDDPLSVLTAVLAQ
ESGSVLLDQLGQKLMEKIGCSWNKKYRKQYGPIRKFLQSNPDVFVLLLNGSRVALRNPAE
TPEQGAGPKSVAESAQDGSEAGSDSGLEAEPVSGHWFDLNDSTVTVIRESDIIKQYEGKE
SAYMLFYRKHTLQRPCHAVGNPAYGVPAHLLQMVEEENAKLQQRRTEFEVSSNSIDVRLH
FGSHYRVESGALKLINTHTNAHTLTLSFDRRRTVGDLRLAVYQMQDTWEGDMALTIAKNL
PAGLHLYDTLTDDQQSLYSAGVYNGSDLFVWNGTEVNGVRVQTGAECEPLLLNILRPGGV
ELDSVGMADVESVGEASVADASGLVQVMRGFSGGVTLGGVREALSLQEALVCQLTKGVGP
GGEGGGASRWKVCSSEAMRRTLKELTLRDGDTLLLLPHTHLNNSIFSVSEDVVTVMTPSD
CRWLQVEFHTHTTQEEEEEEKVMKIPAAGSTLLSEVKQRALVEMQLQEHFTGGVCCLRQR
DRTGKLLPPVREDLSVCDAGIKLMTSLCLCPGHAPNSSQLFLFFSVTPPTGPELEIIVEE
TLTVKECLMAMLQEAGLDGTCWHLRRMDWCEEVGEPLMDENASLLEMGVVNGDTLVITEG
QLPPKGFLKLAVSWFMDMSDECERNHTTESHTTGLQSVGCVEISEEATLHELRCQVLTLP
ALVQVCVPSLECLRVWLVEGKKLIRILRGNQLTLRNLKLSVGSEVCVQKLQCEENLGVKD
ILLRLQVGVAKEEVGMFKESAYFPTHEYVWEAGLDSSPRGLYHAVSTHCGISPENLLLAK
HLPEQHTWITINYEIQSMSKKKKKQNKSNSKGVNLQGAPYCLRDGDTIAVKNLMIDSNRE
FGTVKNEEQILREQTQQREHSRRSEKKKNRKPEVALSINVGVFR
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcggagatctgttcgaagaggaagaagagatcacaactaacagcatcacc
cagggcaaagggaaggtgtgtgagccgccgcctcctcgagggaaactgaagctgtgcgga
attagaaatcagggatcaacatgttacctcaactcactactgcagaccctgttacacaca
cctgagtttagagaggagttgttcagtttgggacctgaggagctcggcaaactggaggat
aaagacaaacctgatgctaaggtgcgtgttattcctctggagttgcagaatctgtttgct
cggttgttgttgttggatgaacaaacaacgacaactacagcgctgacggagagctttggc
tggacaaacaatgaggagatggctcagcaggatgttcaggagttaaacaggattttgttc
agtgcattagaatcatctctggtcgggacgtctgactccagtctgatacggagactttac
cacggaaccctgatcaacaacatcacctgcaatgagtgtcacaacgtcagcgagagagag
gaggacttcctggacctgacagtgtgtgttcggggtgtgtgcagcctggaggaggcgctg
tggagcatgtttgtcgaggaggaagtgtttgatgaaaataatctgtatcactgcagcaac
tgtgaccgactcgtccatgctaccaagtctgctaaactgaggaagctccctacatttctc
accgtgtccctcctgcgcttcagctttgattttgagaagtgtgagaggtttaaggagacg
agaaggtacagcttcccgctcagcatcaacctgcgaccgttctgtgaacagtcagaccag
ccagattctgagctgacctatgagctcttctccatcatcatacacaaaggtggatgttat
ggaggacattaccatgcctacatcaaagacattgaccatcttggccactgggagctgcct
gaggatgatattaaacagaagaagcagaaagtccaggtgaagccccccagcatgagcgtg
tgtaatgctgctgtagagaaggacgacccgctgtctgtactaacggctgtactggctcag
gagtctggcagtgtgttgttggatcagcttggtcagaagttgatggagaaaattggctgt
tcctggaataagaaatacaggaagcagtatggaccaatcaggaagtttctgcagtctaac
cctgacgtgtttgtgttgctgctgaacggctcccgtgtggctctcagaaacccagcagaa
acacctgagcagggggcggggccaaaatcagtagcagagagtgcccaggatgggtcggag
gcgggatcagactcgggtttggaggcggagcctgtgagcggccactggtttgacctgaat
gactcaacggtgacagtgatcagagagagtgacatcatcaaacagtacgaggggaaagag
agcgcgtacatgctgttctacaggaaacatacactgcagagaccatgccatgcggtgggt
aatccagcttatggagttcctgctcacctgctgcagatggtggaggaagaaaacgccaag
cttcaacagaggaggacagagtttgaagtcagcagtaacagcattgatgtccggctccac
tttggctctcattaccgcgttgagagcggagcactgaagctcatcaacacacacacaaat
gcacacaccctcaccctgagctttgaccgcaggaggactgtgggagacctgagactggct
gtctaccagatgcaggatacctgggagggggacatggcactgacgattgctaagaacctg
cccgcaggactacacctgtacgacacactgacagacgatcagcagtctttgtacagcgct
ggagtgtataacggctccgatctctttgtttggaacgggacagaggtgaatggtgtgcgt
gtgcagaccggagccgagtgtgaaccgttgctattgaatatcctgaggccaggtggggtg
gagctggactcagtgggcatggctgatgttgagtcagtgggcgaagcctcagtagcagat
gcctctggtcttgttcaagtgatgcggggattttcgggtggagtcacactgggcggtgtg
cgggaggctctcagcctgcaggaggctctggtgtgtcagctgacaaaaggggtggggcca
ggtggagaaggaggtggggccagcaggtggaaggtgtgttcatctgaggccatgaggagg
acactaaaagaactgacactccgggatggagacacactgctgttgctgccacacacacac
ctgaacaacagtatattcagcgttagtgaagatgtggttactgtgatgacgccgtcagac
tgtcgctggctgcaggtggagtttcacacacacacaacgcaggaggaagaggaggaggag
aaagtgatgaagattcctgccgcaggaagcactttgctgagtgaggtgaaacagagagcg
ctggtagagatgcagctgcaggagcacttcacaggtggtgtgtgttgtttgagacagagg
gacagaacagggaaacttttacctccagtccgtgaagacctcagtgtgtgtgatgctggt
atcaagttgatgacatcactgtgtctgtgtcctgggcatgccccaaattcctcacagctc
ttcctgttcttcagtgtgacgccacctacaggcccagagctggagatcatcgtagaggag
acactcactgtgaaggagtgtttgatggcgatgctgcaggaggctggacttgatggaacg
tgctggcacttgaggaggatggattggtgtgaggaagttggggagcccctgatggatgag
aatgcctctctgttggagatgggagtggttaatggagacacactggtgatcactgaggga
caacttcctccaaagggatttctgaaattggcagtgagctggtttatggatatgagtgat
gagtgtgagagaaatcacacaacagaatcacacactacagggctgcagtctgttggttgt
gttgaaatctcagaagaggccacactacatgagctcaggtgtcaggtgctgactctgcct
gcactggtgcaggtgtgtgttccatctcttgaatgtctacgtgtttggttggtggaggga
aaaaaactcattagaattctcagaggaaaccaactcacactcaggaatttgaagttgtct
gtgggatctgaggtgtgtgttcagaagctgcagtgtgaggagaatcttggggtgaaggac
atcctgctgcgtctgcaggtgggtgtggccaaggaggaggtgggcatgttcaaagagagt
gcctatttccccacacatgagtatgtgtgggaggcggggctagactcctcccctaggggg
ctgtaccatgcagtctccacccactgcggaatctcacctgagaacctgctgctcgctaaa
cacctgcctgaacaacacacctggattaccatcaactacgagattcagtcaatgtccaaa
aagaagaagaaacagaataagagtaacagtaaaggagtgaacctgcagggggcgccatac
tgcctgagagacggagacactatagcagtgaagaatctgatgattgacagtaatcgggag
ttcggtacagtgaaaaatgaagaacaaatactcagagagcaaacacagcaaagagaacac
agtagacgctcagaaaagaaaaagaacaggaagccagaagtggccttgtcaatcaacgtg
ggtgtgttcagatag
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