Ictalurus punctatus (channel catfish): 108272701
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Entry
108272701 CDS
T04658
Name
(RefSeq) methyl-CpG-binding domain protein 5 isoform X1
KO
K23219
methyl-CpG-binding domain protein 5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
108272701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108272701
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
108272701
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
108272701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
Rad17
Motif
Other DBs
NCBI-GeneID:
108272701
NCBI-ProteinID:
XP_017336816
Ensembl:
ENSIPUG00000021421
UniProt:
W5UES6
LinkDB
All DBs
Position
12:12912402..12952088
Genome browser
AA seq
1437 aa
AA seq
DB search
MNGGKESERGEGEGQPAPTQVPIGWQRKLESAGVIYISPSGSVLSSLEQVKSYLLTDGTC
KCGLECPLILPKVFNFDPGATVKQRTAEDVKADEDVTKLCIHKRKLIAVATLHKSMELPH
PSLTLTGPSGGTSAVTSMVPTIQRSATPRAIRNKSHDGLPNSTLPDCKNPFKMMMAAGPR
HYSSDMSSSQQPEHYSGYPRQRLGSNEPGPKSPYRSGPGGMLSPSSGLQAYGDGSLSPRT
DSLGSPDGFARSNPCGFQGAGSPSPIHGNSRTPMSPPGVMIHGSAATQLSCAMAGRTNTP
LSPPVTNKSPIMKKPHCNVSYPPNMDMTRAVFHHKAQSAPHPIPHPVPPSVMPPSCAVQK
KQMTSEKDPLGILDPIPSKPSIQSPMTNPSPSNFQPNAHSQVPMMNVNIPPAIVPLPSNL
PLPTVKPGPVGHGGHMQRTQHGAATSISPSPVTSPVHMSGPAMARMEASPQRSRSSSTSS
EHGSFAMPSGPQGPCGSIKVPPRSPRSSMGSPRPTMPSSPSSKPDTLHQYKDPNQVLSGM
SNAISSQHNSMFPPASGSSAPPKNHPGLLGMPLNQILNQHNSASFPASSLLSAAAKAQLA
NQNKLGGSSGAAMGVGTGMGAGAGGIGSGNASLSSGSNNGNGGNGMPCSLSGGSSGSRAV
EGPNTLNPMLPPSSTMLMPMPEGQSGRAALRDKLMAQQRDPLRKRKQTPNAGSHDNMVFS
MMKPDMSVPRPTCPPPEQMRKVARLGGLPPNTSMAQLLQSMSNQSSHMARSSRPLPSVGP
SQMHFGEGAMPPGMAQQSMQLQQRLHSQSDPMHCQSMEPGAQGPQTPFPGMMNQMQATAM
GNCGPLGQSGQVTLGHPSMGHPSTHPQQLSHVHQQQQGIPHGHIRPNMSCMVPNSNDASC
AQAMSDTANASSLNCSIGNPQMGSIMSSTGHMYQQHQLHPALQTMHRVSPYQAQGHAYSE
TAFPENNVSTNMGCLYQDYQRCLPDGTPIPHTQMSSQPGVTSLPVEPGMFQEGQQELQGH
NEVSLAAGAGGQRSEQLPGAGTEAVDALYRTAVDTASKGMQVGITTTTAGSSGPQASPVP
ALRAMTAFTASIGEPHGLPHAVNAVIHGPRGHEGTDVLVQPCARPPPPTRNNRARRSSEQ
GKCTPDSTDTHDYFRSPGQQWEEPGHAHWRGDEFLECSAQVRSSPCSDGGERVASGTDTN
PQCHDSSEPLGDGNAGNFRYNQLPLHVNFKERLEQTVERCAHINGGPPLCMRGSYNEPLT
GDDQSPSSSTSLEGPLLKDYAHFNGHFNGHCAPSPSDTKSLSSEEELRHPDSPSAELLHY
RPRGFNVGELVWPIKGFPPWPNKLVGEEHGHNPSMQLSNQAKVEPEKLKTLTQDLEALNR
AAKRNRKAGKLNNHLEAAIQEAMSELDKMSGTVHPMSSRERERQMKLPKPKRRKISR
NT seq
4314 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaggaaaggagagtgagagaggggagggggaggggcagcctgcgcctacccag
gtgcctattggctggcagcgaaaattggagtccgctggggtcatctatatcagtcccagt
ggatcagtgctgtccagccttgaacaggtgaagtcctacctactcacggatggcacctgt
aagtgtggcctggagtgtccactcatcctccccaaggtgtttaatttcgatcccggggcc
actgtcaaacagaggactgcagaggatgtgaaggctgatgaggatgtcacaaagctttgc
atccacaagagaaagctcatagctgtagccactctgcacaaaagtatggagttaccgcac
ccctccctaacgctgactggtcccagtggaggcacaagtgctgtgacgtccatggtccct
accatccagcggtcagcaacccctcgagcaataaggaataagtcccatgatgggctgccc
aactcaacactacctgactgtaagaaccctttcaagatgatgatggcagcaggtccacga
cactactcttcagacatgagcagttctcagcagccagagcattattctggatacccacgg
caaagattgggcagtaatgagccagggcctaagtccccctaccgcagtggacctggaggc
atgctgagtccttcatcaggtttgcaggcgtatggggatggctctctgtcccctagaaca
gactctttgggtagtccagatggatttgcacgaagtaatccctgtggctttcagggagct
ggtagtcccagcccaattcatggcaacagcaggacacccatgtcccctcctggtgtcatg
atccatggttctgctgccacccagttatcctgtgccatggctggtaggactaacacgcct
ctctcacccccagtcaccaacaaaagccctatcatgaaaaagccacactgtaatgtcagc
tacccacctaacatggacatgaccagagcagtatttcaccacaaggcccagtctgcacct
caccctattcctcaccctgttcctccctctgttatgcccccctcatgtgcagtccagaaa
aaacagatgacttctgagaaggaccctctgggaattctggaccccattcccagcaaacct
tccattcaaagtcccatgacaaatccaagcccatccaacttccagcccaatgcccactct
caggtaccaatgatgaatgtaaacatccctcctgccattgtcccgttgccaagcaacctt
ccattaccaacagtgaagcctgggccagttggccatggtggacacatgcagaggactcag
catggagcagccacctccatctccccctcaccagttacgtcccctgtacacatgtctggg
cctgcaatggcccgcatggaagcatctccacagcgatcccgctcctcttccacctcatca
gagcatgggagctttgccatgccctcagggccccagggcccatgtggaagcataaaggtt
ccaccacgctcacccagatcctccatgggctcgcccagacccaccatgccttccagcccc
tcttccaagcctgacacactccatcagtacaaagaccccaaccaggttctgtcgggaatg
agtaatgcgattagcagtcagcacaactccatgtttcccccagcctcaggcagtagtgct
cccccgaagaaccaccctggactactgggcatgcccctcaaccagatcctcaaccaacac
aactctgcctctttccctgccagtagtctactctcagcagcagccaaagcacagctagca
aatcaaaacaaacttggtggtagcagtggggctgctatgggtgttggcacaggaatgggt
gcaggtgctggtggcattgggagtggaaatgctagtctttccagtggtagtaataacgga
aatggtggcaatgggatgccttgctctcttagtggtggaagtagtggtagcagggctgtt
gaagggcccaacactttaaatcccatgttaccacccagctcgaccatgctaatgcccatg
cctgagggccagagtggacgtgcagctctgcgggacaagctcatggcccagcagcgtgat
cctctccgtaagcgcaagcaaactcctaatgctggcagccatgacaacatggtcttcagc
atgatgaaaccagatatgagtgttcccaggccaacttgccctcctccggagcaaatgagg
aaagtggcccggcttggaggtctacctcccaacacctccatggcccagctacttcagtcg
atgagcaaccagagctcccacatggccaggagtagtcggccattaccttcagttggccct
agtcagatgcactttggagagggtgctatgccccctggcatggcccaacagagcatgcag
ttacaacaacggcttcacagtcagtcagacccaatgcactgtcagagcatggagcctggt
gcacaaggccctcagactccattccctggtatgatgaaccagatgcaagccacagctatg
gggaactgtggaccattgggccaaagtggacaggttaccctaggacatccttctatggga
cacccaagcactcacccacagcagctgtctcatgtacatcaacagcaacaaggcattcct
catggacacatccggccaaatatgtcctgtatggtacccaatagcaatgatgctagttgt
gcccaagccatgtctgacacagctaatgcatcatcgctgaactgcagtataggtaatcct
cagatgggcagcatcatgagcagcacaggacacatgtaccagcagcaccagctgcatcca
gcactccagaccatgcatagggtctccccataccaggcccaggggcacgcttattcagaa
acagcatttcctgagaataatgtctccaccaacatgggctgtctgtaccaggactaccag
agatgcttgccagacggcaccccaatcccccacacccagatgagctcacagcctggtgtg
acatcacttcctgtggagccaggaatgttccaggaaggtcagcaagagctccaggggcat
aacgaggtctcattggcagcgggcgctggaggacagagatcggagcagttgccaggtgct
ggcacggaggcggtggatgccctgtaccggacagcagtggacactgccagtaaaggcatg
caagtgggtatcaccacgacaacagcgggcagtagtggaccacaggccagtcctgtgcct
gcgcttagagccatgaccgccttcaccgcctccatcggagagccgcatggcttgccgcat
gccgtcaatgcggtcattcacgggccacgtgggcatgaaggcactgacgtgctggtgcag
ccctgcgctaggcccccgccccctacgcgaaacaaccgagcacgcaggagctcagagcag
ggcaagtgcacacctgatagcacggacacgcacgactacttccgctcacccgggcagcag
tgggaagagcctggtcatgcccactggagaggagacgagtttctggagtgttcagcgcag
gtgcgcagcagcccgtgcagtgacggtggggagagagtggcgagtggcacggatacaaac
ccgcagtgccacgattcgtctgagcctttgggtgacggaaatgccggtaacttccgttac
aaccagcttcccctccacgtcaatttcaaagagcggctggagcagacggtggagcgttgt
gctcacataaacggcggtccgcctctgtgtatgcgaggcagctataacgaaccgcttaca
ggtgacgaccagtcccccagctcctccaccagcttggaggggccgctgctgaaggactac
gcccacttcaacgggcactttaatgggcactgcgcacccagcccctcggacaccaagagc
ctgagcagcgaggaggagctgcgccacccggattcgccctctgccgagcttcttcactac
cggccaagaggcttcaatgtgggtgaacttgtctggccaattaaaggtttccctccctgg
cctaacaaactagtaggggaggagcacggccacaatcccagcatgcaactctccaaccag
gccaaggtggagcctgagaagctgaaaacactaacacaggacctggaggcactgaacaga
gctgccaagaggaacagaaaagctgggaaattaaataatcatttagaagctgctatccag
gaagccatgagtgagctggacaagatgtcaggcactgttcatccaatgtcctcaagagag
cgagaacgacagatgaaactgcccaaacccaaaaggaggaagatctccagataa
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