Ictalurus punctatus (channel catfish): 108272903
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Entry
108272903 CDS
T04658
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108272903 (cica)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108272903 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108272903
NCBI-ProteinID:
XP_017337230
Ensembl:
ENSIPUG00000004959
UniProt:
A0A2D0S4U0
LinkDB
All DBs
Position
12:17308729..17346099
Genome browser
AA seq
2484 aa
AA seq
DB search
MKPFKKQGRRSPPSTRAKGSKRRGLTDASPEEEKRDTEEKPRLSPSSPKRLISSNSDSSQ
DELVRAIRTPERDGKIEGILDVSGDYGKAKEHSQSFKSGGTQSDSNSPNPSSSRKTATFK
ARVPKKKYTSEHYAGNHGNDGNSSTPPQSDSSTPHNCSSASQCSTTGAEYTDTVSQSNQV
PVASTSGVIQNSMAAQSNRMGDENSEREKINTSSPQRCSSTDTASEHSADLEVTAQQSGS
HSSVQGGQPHVSPEPPQENLPAGLSQTLAKGLKNQRVLARVCTRRGDKWPPDRGRESSGV
FRAGVVREVSGEHGSVEVQLHGEETICKYPFRVATDMVDVILDAPPPGHASVPTGTRVCV
PFGGGSESSEGAQLWYREGLITEVDPHPAVSFPYRVQLQKDPEDEKDRTGPEEDWRGKTA
RAVWVSRQSLRLLVPPWDLELPQTTDRGKVGRRVGGREREWENKEDMEVESELCRFSMVH
GVTGPVLVTGLLHPQTSSLPLSSSCSISTAITSVLSIATDRAWDCSRQKELEKERELQMQ
SEKERERERISLQAPAPEEDMEVSHFSMAPLREGGLTLTMGTKPSGVPSQHRPILSKPDY
LSPHLSVVRGIGTPLAPHLSLGPSPVLLGMDTTPVISSTPQLPPLPPSSSRSSVEKTSTS
SSHGTSGGGSSSSSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKKFNGKQWRRLCSREGCS
KESQRRGYCSRHLSMRTKEMEAGGGLGRDRSGASSTGTLTPDLRLGGRTSSEIDWDETSH
DSSEASSRGGDSRPRLILPSLLPQELPRDLSRFDFDECEAANMLVSLGSSRSGTPSFSPV
SNQSPFSPAPSPSPSPLFGFRPANFSPITAPSSLTPRRPRHLSGTKLGTPGAERDRHLSG
IMPTFQTNLTFTVPMSPSKRKLDAPPPPLPIAPDYTKSDPHLGDLPLGLNPAAFRAVSPQ
SQSNTPSSLSFTRPRSTTSRPSSSAASTPPPMLVSPTPPSPLPQDPSSRRIVPLRDSPVI
VRNPDVPLTKFSDGPLSRRTSSRSREHSQAPHLAVGLQAPIPINRAATNGTVLLRNSAPT
LVLVTSAQSLTTAGAGHQTYSSQSPSCVSSSSITTGSPASSGSGGREQDRKPGDHADVQG
GILPQPVACHPSPTALLPLILPAESPHPAPRKDIIMGRPGTVWTNVEPRSVQVFPWHSLV
PFLETSQSNSSNHPTDGQTQSKEPQCGVALVTDEQSVVERASPSCPPASVGDPPAERGGG
DSETESDADDLFYSGGAQDPALLTGPVKRRTQSLSALPKDGDKKREKDHIRRPMNAFMIF
SKRHRALVHQRHPNQDNRTVSKILGEWWYALGAKEKQKYHDLAFQVKEAHFRAHPDWKWC
NKDRRKSLSEGRGTPGAKETRERSASESTEIQSISQRGEHKGAGPSWVSPESEHWGGPAG
GQLTRPRALSQSAVHSPERKEGEKDPIKNGVSSFQTCPTPISQRRTSEDVTSDEEPMVIC
EEEGDDDVIGDSFPEGSIDLKCKERVTDSDEENDPADETDGKRVVHPLLLSSPGGESANK
ETESKGESAESKIKKETETGELCEGIKEGKGGSGGMGDGGAGQVPKSFSLNGTLSSEAKE
LHVPGTVRTAPTVVTNVVRPVTSAPITIASKPAEMGMPLGAPSPDGKSKLLIGGGGAAGS
GAIAGCGYFSASSPKPVGQGGLVTGLVLGGAFPNPPTVQLITPPQPLQGTTTINGASNNS
TMPLPLLQPQFLPAASLTPPTNGKQVTQVQYILPTLPATATLNSPSSQQTHQSAGVLALP
TALPTHLSLSNGLHAGAGPGMRYASMPAVGGVSPGGRARSPVLQNKMLVPMTTVRPGSTP
PQPISLVAQPLPVQNGVQPGSKLIQIAPMPVVQTNVQPARTVHPAASFPVSMATATVMTS
GGTSPQTVLLTPSATRITYVQSTTGVATPLPLGSTTAVSTPQRAAPPHTQAFLPSAMATL
GFTAIAPAGPTLVHPIVAGQPPLLAQVPSPSCLPQSSASESSRQLVTALYPGPSVTLATG
VVSMTTTSQNVTSPLSVLTSPSSPHMKPSIASNVHLHSQTYTHSPSQVTLKMESLKRPEA
DTHRDPVLSNTSSQMEELGLLASPTPHLHSGSRAGSPKLPLSPQKINVQGELPPSRQERE
EHDGKKASRKERDSERDGGGMGPTWIEKAVRERGIEGAPKSPLTNNKEEHGREAGQKEVC
GLDLPPPPTQTDTPTLKKNKSRPPPLKSTTGSVDKVMSDTYFEERLAELPEFKPDGALPS
PNLQNLATSPRAILGSYRKKRNSTDLDSVDDPSSPRRKSRRLSSCSSEPNTPKSAAKCEG
DIFTFDRTGETEDILGELDRVPYSLRRTLDQRRALVMQLFQEQGSFFPSAQATVAFQARY
SDTFPTKVCLQLKIREVRQKIMQTATPGGLEVAGIGGAFGGSDSACAPGPSNPISGEDGV
AEVDEKGCEWEKPKTGMDESQDLR
NT seq
7455 nt
NT seq
+upstream
nt +downstream
nt
atgaagccctttaaaaaacaaggcagacggtcacctccatccacacgagccaaagggagt
aagagaagggggctgacggatgcaagcccagaagaggagaagagggacacagaggaaaaa
cccagactctcaccctcctctcccaagagattgatatcctcaaattcagactcatcacag
gatgagttagttagagccattaggaccccagagagagatggaaaaatagaaggaatactg
gatgtatcaggggattatgggaaggcaaaggagcattctcagagctttaagtcaggtgga
acacagagtgacagtaacagccccaatccctcatccagtcgcaagacagccacctttaag
gcccgcgtgccgaagaaaaagtatacctctgagcactatgctggaaaccatggcaatgat
ggaaattccagtactcccccacagagtgacagcagcacacctcacaattgctccagtgct
agtcagtgcagcaccactggagctgaatacacagatacagtcagtcagagcaaccaggta
cctgtggccagcacctcaggggtcatacagaacagcatggcagcacagtcaaacagaatg
ggagatgaaaatagtgagagagaaaagataaacacgtctagtcctcagcgctgctcctcc
acagacacagccagtgagcactcagctgaccttgaggtgacggcacagcaatctggatcc
cactccagtgttcaaggaggccaacctcatgttagtcctgagcctccacaggaaaaccta
ccagctgggctgtcacaaacgcttgcaaagggtttaaagaaccagagggtcctggccaga
gtgtgtacaagaagaggggacaagtggccaccagatagaggacgagagtcatcaggagtt
tttcgtgctggtgttgtacgagaagtcagtggagagcatggaagtgtggaggtgcagtta
catggggaggagacaatatgcaaatacccattccgagtggctactgatatggtagatgtg
atattggatgcaccccctccggggcatgcatctgtgcccacaggaacacgtgtgtgtgtg
ccctttggaggtggcagtgaaagcagcgagggagcacaactgtggtacagagaaggcctg
atcactgaggtggaccctcatcctgctgtttccttcccttatcgtgtccagctccaaaag
gatccagaagatgaaaaggatagaactggaccagaggaggattggaggggcaaaactgct
cgagcagtgtgggtctcacggcagagtctccgccttctggttccaccatgggacctggag
ctgcctcaaactactgaccgagggaaggttggtcgaagggtggggggaagagagagggaa
tgggagaataaagaggatatggaagtggaatcagagctgtgtcgtttcagcatggtgcat
ggggtaacagggccagtattagttacaggactgttacaccctcaaacttcttcattacca
ctgtcctcatcttgttcaattagcactgccatcacttctgtactcagcatagctacagac
agagcttgggactgcagccgacaaaaagagctggagaaagagagggagttgcaaatgcaa
tctgaaaaggaacgagaaagggaaagaatttctttacaagcaccagccccagaagaggac
atggaggtcagccatttcagcatggctccactcagggagggtggcctcactttaaccatg
ggcaccaaaccttctggtgtgccctcccaacatcgacccattctctctaagcctgactac
ctcagccctcatctgtcagtggtgagaggcataggcacaccattagcaccccacttatcc
cttggcccctcccctgtactgctgggaatggatacaactccagttatctcttctacccca
cagttgcctccattgcctccctcctcttctcgcagctctgtggagaaaacatccacttct
agttcccatggtacatcagggggaggctctagctcatcttcctcatcacgttcccgtaca
cctctcacagctgctcagcagaagtacaagaagggggatgtggtatgtactcccacagga
atccgaaaaaagtttaatgggaagcagtggcggcgactgtgctctcgtgagggctgctct
aaggaatcccagcgacgtggctactgctcccgtcatctgtctatgcgtactaaagagatg
gaggcaggaggtggtttgggcagagacagaagtggtgccagcagtacaggcaccctcaca
cctgatctccgcttaggaggtcgtaccagcagtgagattgactgggatgagacatcacat
gatagtagcgaagccagcagtcgtggaggagactcacgtcctcgtctaattttgccatcc
ctcctaccgcaagagctgccacgtgatttatcacgctttgactttgatgagtgtgaggcg
gcaaacatgttggtgtctttgggcagttcgcgctcaggcactccctcattctccccagtg
tccaatcagtcaccattctcccccgccccatctccttcaccatctccactctttggtttt
cgcccagccaatttcagccccatcacggcaccttcatctctcacccctcgccggccacgc
catctcagtggtaccaagctgggtacccctggtgcagagcgggatcggcacctatctggt
attatgcccacttttcagaccaacctgacctttactgtgcctatgagtcccagcaagcgt
aagttggatgctccgccacccccacttccgattgcacctgattatactaagtctgatcct
catttaggtgacttaccactgggtctcaatcctgcagcctttagagcagtatcacctcaa
agccagtcaaacacaccctcttctctctcttttactcgaccaaggagtacaaccagtcgt
ccctcatcttctgctgcatccacccctccacctatgttggtttctcctacacccccctca
ccactgccccaggaccccagctcacgccgtattgttcccttgcgtgactcacctgtgatc
gtccgcaatcctgatgtgccactgacaaaattcagtgatggtcccttgagcagaagaaca
agttcccgctccagagagcatagtcaagcacctcaccttgctgtgggtctccaggcacct
attcccattaacagagctgccacaaatggtacagtactgctccggaactctgcccccacc
ttggtgctggtaacctctgcccagtcactaactactgcgggagctggtcatcaaacctac
tcaagccagagccccagctgtgtttcttcttccagtataaccactggcagtcctgccagt
tcaggctctggcgggagagagcaagacagaaagccaggtgatcatgcagatgtacaaggt
gggattttaccacaacctgtggcctgccatccgagtcccacagccctactgcctctcatt
ctaccagcagagtctccacatcctgcccctcgcaaagacattataatgggacgacctggc
acagtctggactaatgtggagcctcgctcagtgcaagtgtttccctggcattcattggtt
cctttcctggagaccagccaatccaattcatccaaccatcctacagatggtcaaacacag
agcaaagagccacagtgtggagtagctctcgtgactgatgagcagtcagttgttgagaga
gcatcgccctcctgcccaccggcctctgtaggtgatcctccagcagagagaggaggagga
gatagtgagacggagagtgatgctgatgatctcttttactcaggtggagcccaagatcct
gccctgttgactggtccagtgaagagacggactcaatcactcagcgctctgcccaaagac
ggtgacaagaagagagagaaggaccacatacgccggccaatgaatgcgttcatgatcttc
agcaagcgtcaccgtgctctggtgcaccagaggcacccaaaccaggacaatcgcacagtc
agtaaaatcctgggtgaatggtggtatgctctaggtgccaaggagaagcagaagtaccat
gaccttgcctttcaggttaaggaggctcatttcagggctcaccctgactggaagtggtgt
aataaggacaggaggaagtctctgtccgagggcagaggcactccaggggctaaagaaacc
cgagaacgaagtgcttctgaaagcacagagatccagtcaatttctcagcggggtgagcac
aagggagcagggcctagctgggtgtcgccagagtctgagcactggggagggccagcggga
ggccagctgacacggcctcgtgctttgtcccaaagtgcagtgcatagcccagagagaaaa
gagggagaaaaggatccaataaagaatggagtaagttcatttcagacttgccccactccc
atctcacagcgtagaactagcgaagatgtaactagtgatgaagagccaatggtcatctgt
gaggaagaaggagatgatgatgtcataggtgattcatttccagagggctcaatagaccta
aagtgcaaggaaagagtgacagatagtgatgaagagaatgaccctgcagatgaaactgat
ggcaagcgagtggttcatcccctcttgctctcatctcctggaggcgaatcggcaaacaaa
gagacagaaagcaagggagagagtgctgagagtaagataaagaaggagacagagactgga
gaactgtgtgaaggaataaaagaaggaaagggaggaagcggaggaatgggagatggagga
gcaggccaggtccctaaaagttttagcttaaatggcactctctcatctgaagcaaaagaa
ttacatgtgccagggacggtccgaacagcccccacggtagtgacaaatgtggttagacct
gtaaccagtgcccccattacaatagccagcaagcctgctgaaatgggcatgcctcttggg
gctccatcccctgatgggaagtccaagcttctgattggtgggggaggagcagcaggaagt
ggggccattgcagggtgtgggtatttttctgcctcgtctcccaaacctgtcgggcaagga
gggttagtcacaggtttagtacttggaggagcattcccgaacccacccactgttcagctc
ataaccccgccccaacccttgcaaggcaccaccactattaacggagcctccaacaacagc
accatgcccctccctctgcttcagcctcaattcctcccagcagcttcactcaccccccct
accaatggcaaacaagtcacccaggtgcagtacatccttccaactctaccagccacagcc
accctaaacagcccctcttcacagcagacccaccagtcagccggtgttcttgccctgccc
accgccctgccaacacacttatcattgtctaatggattgcatgcaggggctgggcccggg
atgagatatgcctcaatgccagcagtgggaggggtcagcccaggaggaagagcacggtct
ccagtcttacaaaacaagatgctagttcccatgacaacagtaagaccaggatcaacacct
ccacagcccatttccctagtggcccagcctcttcctgttcaaaatggggtgcaacctgga
agtaagctcattcagattgccccaatgccagtggtccaaaccaatgtccagcctgcacga
acggtacaccctgctgcctccttcccggtctctatggcaacagcaactgtcatgacctca
ggtggcacatctcctcagacagtgttactgactccatctgctacgaggattacatacgtt
caatcaaccactggtgtcgctacccctttgccattggggtccacaacagcagtctccacc
cctcaacgagcagcgccccctcacacacaagcatttttgccctctgccatggccacactg
ggcttcactgccattgcgcctgctggccctacgttggtgcatccaatagtggcaggccag
cctccactcctggctcaggttccatcccccagctgtttgcctcagtcctcagcctcagag
tcaagtcgacagctagtgactgctctttaccctggcccaagtgtcaccctggcgacagga
gtggtttccatgacaaccacatctcaaaatgtgaccagtcctctgtcagttctgacgtcc
ccctcatcgcctcatatgaagccatctatagcatcgaacgtgcacttgcattctcagacc
tacacacactcaccgtcacaagtcacattgaagatggaaagtcttaaaaggccagaggca
gatacacacagagatccagtgttgtcaaacacatcaagccagatggaagaactcggactg
cttgctagtccaaccccacacctgcattcaggaagtagggcaggatctcccaaactgcca
ctgagcccacagaagatcaacgttcaaggtgagcttcctccgtcaagacaagaacgggaa
gagcatgatggaaagaaggcaagcagaaaggaacgtgacagtgagagagacggtggagga
atggggcctacttggatagagaaagcagtgagagagaggggaatagaaggagcccccaaa
agccctttaactaataacaaggaggaacatggcagagaggctggacaaaaagaggtgtgt
ggtttggacctgcctcctccaccgacacaaactgacactccaacactcaagaagaacaaa
tctcgccccccgccactcaaaagcaccactggctctgtggacaaagtgatgtcagacaca
tatttcgaggagcgcctagctgagctgccagagtttaaaccagatggcgcgttgccctcc
cccaacttgcaaaatctggccacatctccccgggcaatactcggcagctaccgcaagaag
aggaattctacagatttggactctgtcgatgaccccagctctccaaggaggaagagtcgt
cgcttatcgagttgtagctcagaacctaacacacccaagagtgctgccaagtgtgaggga
gacatattcacctttgatcgaactggagagacagaggacattctaggcgagctggaccgt
gtaccatactctctacgccgtacgttggatcagcgccgtgcacttgtcatgcagctcttt
caggagcaaggctccttcttcccatcagcccaggccacagttgctttccaggcccgctac
tctgatactttccccactaaagtgtgtttgcagctgaagattcgtgaagtgaggcagaag
atcatgcagactgccacacccggtggtttagaggtggcagggattggaggagctttcggt
ggctcagattctgcttgtgcaccgggaccatccaaccctatatccggtgaagatggcgtg
gccgaggtagatgaaaaaggctgcgagtgggaaaagcctaagactggcatggatgaatca
caggatcttagatga
DBGET
integrated database retrieval system
