Ictalurus punctatus (channel catfish): 108272950
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Entry
108272950 CDS
T04658
Symbol
tnrc6c2
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X2
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108272950 (tnrc6c2)
03036 Chromosome and associated proteins [BR:
ipu03036
]
108272950 (tnrc6c2)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108272950 (tnrc6c2)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108272950 (tnrc6c2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA
RRM_1
RRM_occluded
THOC7
Motif
Other DBs
NCBI-GeneID:
108272950
NCBI-ProteinID:
XP_017337332
Ensembl:
ENSIPUG00000022767
UniProt:
A0A2D0S3N3
LinkDB
All DBs
Position
12:complement(16313656..16348582)
Genome browser
AA seq
1485 aa
AA seq
DB search
MSMATGASQHSHYPISKASVNHSSSMFSSQGGPNRGWASEGKSDLSMGTRGQSNWGSSNI
NLNPSANPAAWPILGHDGPGVGTRTGGMGGSSSVPSNVCGPGGVAPIQGTNGNGNLVGDC
AWGNPDTPEQHQSPTSMTFSMEPPNLKTDGLNTKAEPMSPVDGWGRNMSQSPTEPATGDG
NPRWGNGDTKSGESKDSGWDSGGISSWGQGGGDANWGQWSKQSSTEGTGWDASDGPTQES
MNSWGTDAPGSEGSKDSSEGREARRERSSSMDVPLLPRQDLDPRVLCNSGWGQTPVRQHT
VWEMDENLGPKDDCGTEVRGTSSNAPSTGSPPHAGCVNPNLNVPPRMDSGNKTEGLSRVI
PTPRWGGPSSPTNQAGTGWGEPPANKKVSNGSIGSWGEPMPDGPSTNGSSGQFWGSEDKS
STWNDGPSKVKSQSGGNGPSSSSGWGNCASGDWTEPSEGRMEGSRSSSWNGDGGSWKETQ
KPWGKAAPPAGENWRDSQRSNGPVQGWAGKNPQESMGSWVGPNSVKQSGSTWRSTGRQDP
GDEATGWEEPSPSSIRRKMEIDDGTATWGDPNSYRTCVNMWDRNNPSSQGNPATSNNGGN
SINHTGPNHHSHSQTPNHSDGNNNGSSNQLGPLQNRMPKVNPGRGELPNVQPKSEAWVEP
DSSSPTLDNGTAAWGKSHKASGVWGENSHESNGSFGRGSGTSKPAPKSMQDSWGSGGEEI
GASGSQWEAEDGDMWTSPTSQDNTSSCSSWNQPKKGLQKGKIPTKQDEVWIMNRLIKQLT
DMGFPRDPAEEALRSNNMNLDQAMSALLEKKSDGEKRGMRTLLCRPPNLSKDSPLDRTAF
LDKDGGLADDTPTSPFIHSPGLKLTNSSLPSHSMGGVSPGLMQNLNSRQMNGMFGSNGAA
QSRAPPPQALNSTHHPPLRAQVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTL
LYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTISNMQQQIQQHQRQLAQAL
LMKQQHHQASSSQSYPSLGKPNLDTFPGNSQASTGLSMSDLHTKDPHTSPSSFSPYSLSG
LNGSVGVGVGCMDALKDTQPQPQSRLSQWTHTSSIDSISTTTSPSAPSSSHTANIKPVIE
DSFSPYNLMSSCQSPSSPLGAPESWPPAKNTNDKMANGTNVNWPPEFCPGVPWKGLQNID
PESDPNVTPGSVSGCPTINTNIQDVNRYLLRDRNGGKLLDMKSTWSTGSVSHTQASLSNE
MWKIPVGGRSSGTVPRPPPGLTNNKHNNNWTPGPLSNSWSRNYSSESTGWNSESSSRTSS
WLVLRNLTPQIDGSTLRTLCMQHGPLITFHLSLPQGNALVRYSSKEEAAKAQKSLHMCVL
GNTTILAEFAGEEEVTRFFSQAQSFPPSGSSTHPALGQWGTSTTKGGSNPGGGANGAAAE
LLWGGVQQPYSSLWGPISGEESRVMGSPVPVNTLLPGDLLNGENM
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggctacaggagctagccaacacagccactacccaatcagcaaagccagtgtt
aatcactcctcaagtatgttctctagtcagggtggccccaacaggggttgggcctctgag
ggcaaatccgatttgtccatgggtaccagaggtcagtccaattggggttcttcaaatata
aacttgaaccccagcgctaaccctgccgcgtggcccatacttggacatgatggcccaggg
gtggggaccaggactggtggtatgggtgggtcaagttcagtcccatccaatgtctgtggc
ccaggaggtgtcgcacctattcaaggcaccaatggaaatggaaaccttgtaggagactgt
gcctggggaaacccggacaccccagagcagcaccagtccccaacaagcatgactttcagc
atggagcccccgaaccttaaaactgatggactgaatactaaagcagagccaatgagccct
gtggatggttgggggagaaatatgagtcagtctcccactgagccagccactggagatggt
aatcctcggtggggtaatggagacaccaagagtggagaatcaaaagactcaggatgggat
tctggtggcatctcctcttggggacaggggggaggagatgcaaactggggtcaatggagc
aaacagtcaagcactgaaggtaccgggtgggatgcaagtgatggtcccactcaggagtca
atgaattcctgggggactgacgctccaggcagcgaaggtagcaaggacagcagcgaagga
cgtgaagcacgcagagaaaggtcctccagtatggatgttccacttctgccaaggcaggac
ctagatcctcgtgtgctgtgcaactccggctggggtcaaacccctgtccggcagcacaca
gtctgggaaatggatgaaaatcttggccccaaggatgactgtggcactgaagttcggggt
acttcctctaatgcaccttcaactggatcaccacctcatgcaggatgtgtcaatcccaat
cttaatgtgcctcctaggatggactctgggaacaagactgaggggctttctcgagttata
ccaacaccacgctggggaggaccgtcctcaccaacaaatcaggcaggcactgggtgggga
gagccacctgctaataagaaagtgtctaatggctctattggtagttggggtgagccaatg
ccagatggtcccagcacaaatggttctagtggccagttttggggatcagaggacaagtct
tcaacctggaatgatggtccttccaaagtaaagtcacaatctggtggaaatgggcctagt
tcttcttcaggctggggaaattgtgcaagtggagattggacagagccttcagaagggaga
atggaaggttctcgtagttcctcttggaatggagatggagggagctggaaggaaacccag
aagccctgggggaaagcggctccaccagcaggtgaaaattggcgtgactcccaacgctca
aatggtcctgtacagggttgggctggaaagaatcctcaagaatccatggggtcttgggtc
ggcccaaattctgtgaagcagagtggttctacctggaggtctacaggaaggcaggatcca
ggggacgaggctacaggctgggaagagccttccccttcctcaatccgaaggaaaatggag
attgatgatggaaccgccacttggggagatcctaattcttacagaacctgcgtaaacatg
tgggacagaaataacccctcctcccagggcaacccagctaccagcaacaatgggggcaac
agcatcaaccatacagggcctaaccaccatagccacagtcagactccgaaccactctgac
ggcaacaacaatggttcttctaaccagctaggacctcttcaaaataggatgcccaaggtg
aacccaggtcgtggagagctccccaatgttcagcccaaatctgaggcgtgggtggagccg
gattcttctagccccacgttggataacggcactgctgcctgggggaagtcacacaaagcc
tccggagtctggggagaaaacagccacgaatccaatggatccttcggcagaggctcagga
acttccaaaccagcccccaaatctatgcaagacagctgggggtccggtggggaggagatt
ggcgctagcggcagccaatgggaggctgaggatggggacatgtggactagccccacctcc
caagacaacacttcttcctgtagttcctggaatcagcccaagaagggactacagaagggg
aaaatcccgaccaaacaggatgaagtttggatcatgaaccgactgatcaaacagctcacg
gacatgggcttccctagggatcctgcagaggaggcactgagaagtaacaacatgaatctg
gaccaggctatgagcgctctgctggagaaaaagagcgatggagaaaagcgagggatgagg
acgctgttgtgtcgcccgccgaacctctcaaaagactcgcctctagaccgaaccgccttc
ctggacaaggacggcggattagcggatgacactcccacatcaccctttattcattctcct
ggcctcaaactgaccaatagcagccttcctagccacagcatgggcggagtctcaccagga
ctaatgcaaaacttgaacagcagacagatgaatggaatgtttggcagtaatggagcagca
caatccagggctccaccccctcaagcactaaactccacccatcatcccccactacgtgct
caagtgcctcagtttctctcccctcaggttcaagcacagctcttgcagtttgcagcaaaa
aacattggcctgaatcctgcacttttaacctcgccgataaatcctcaacagatgaccctg
ctttaccaactccaacaactgcagatggcatatcagcgtttgcagattcagcagcagatg
atgcaagctcagcgaaatgtttctggtcccattagacaacaggagcagcaagttgcacgt
acaatctcaaacatgcagcagcagattcagcagcaccagaggcagttagctcaggcctta
ctgatgaagcagcagcaccaccaggcctcgtcctctcaatcttaccccagcctcggcaag
ccaaacctggacaccttcccaggaaactcccaggcttctacaggcctctccatgtcagac
ctgcacaccaaagacccacacacgtctcccagctccttcagcccgtattctctgtctgga
ttgaatgggagtgtgggtgtgggtgtgggctgcatggacgctctgaaggacactcagcca
cagcctcagtctcgattatcccagtggactcacaccagctccatcgactccatcagcacc
accaccagccccagtgctccgtcctcgagccacactgccaacattaaacccgtgattgag
gattctttcagtccttataacctgatgtccagctgccaatctcccagcagccccttgggg
gcaccagagagctggccaccggccaaaaacactaacgacaaaatggccaacgggacaaac
gtcaactggcctccagagttttgtccaggagttccctggaaaggtctgcagaatatcgac
cccgagtccgaccccaacgtgaccccaggaagtgtttcaggctgccccacaatcaacacc
aatattcaggacgttaatcgttacctgctccgggacaggaatggaggtaaactgttagac
atgaagtccacctggtctacaggttccgtctcacacactcaagcctcgctgtctaatgag
atgtggaagattcctgtgggtgggcggagctctggaacagtgccccgccccccgccgggc
ctcactaacaacaaacacaacaacaactggacacctgggccgctgagcaacagctggagc
cgaaactattcctcagagagcactggttggaattccgagagctccagcaggaccagtagc
tggcttgtgttgcgtaatcttactcctcagattgatggttccactctgaggactctgtgt
atgcagcacggccccctcattacgttccacctcagtctgccgcaggggaacgctctggtg
cgctacagctccaaggaggaagcagctaaagctcagaaatccttgcacatgtgcgttctg
ggtaacaccaccatcttggcggagtttgctggagaggaggaagtgactcgttttttctct
caggctcagtcattcccaccctccggcagctccacccaccccgccctgggtcagtggggc
acgtcgaccactaaggggggcagtaacccagggggcggagctaacggggccgcggcagag
ctgttgtggggtggagtccagcaaccgtattccagtttatgggggccgatcagtggagag
gagagtcgagtgatgggaagtcccgtacccgtgaacacgctgctccccggagacctgctg
aacggagagaacatgtag
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integrated database retrieval system
