Ictalurus punctatus (channel catfish): 108273796
Help
Entry
108273796 CDS
T04658
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108273796 (jmjd1cb)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108273796 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JmjC
FYVE
zf-C5HC2
C1_2
Motif
Other DBs
NCBI-GeneID:
108273796
NCBI-ProteinID:
XP_017338817
Ensembl:
ENSIPUG00000007001
UniProt:
A0A2D0S7V2
LinkDB
All DBs
Position
13:complement(9503858..9642423)
Genome browser
AA seq
2588 aa
AA seq
DB search
MAAAAAAVVEARPELVGKRFLCVSGEAPPELAEIARWPWRAGVIRAVSHRDTDNPELTVY
VEFDDLEWEKREWVKVYEDFQIFLLEQQLVWAKRKEGSQLQGTRAKQIQWPALTFKPLVG
KSVLGSITAVEFFSDRQLDFLTDDGASQPYQDEVDSLSPVLRDNPQLHEEVKGWVKDQKV
QEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPSMV
QMTFLDNVVHSLLKGENIGITSRRRSRSSQNSNTAHQTTGGRPSGNTGSTQGHYTRAQAN
SPRPVMNSSGSTTKQGPQTQQQQSQHAQQQVSQQHQQQLQSSPGQQRGSRSSRRKGSDSS
IPDDEKIKEEKMDSGGGRGDVSRNKSKQMVSKRRKAEDEEKKAGLKRIKMEASDLSESSD
SENSNKRLLDSSSEQSSENELKSKGISKAAEEEDKSQSCNALEESEANSRVSPWEEVSKV
EKIVKPTAMEVVPSAKTEQTGGRRSPVQPSPLPPPSPCAQPQSLGPAEVQGCIVEIKSTV
KTLPKDHYSTGAPRTHTPKCVIDITEDSGSHPATRENSEAVSALLASQKRETYVPEARHL
VLNPSASECRKPEGELQQQRGQSLGSKIEFDLSDVIRPVASVSESAAVAEREREKVQQQY
PSIMPCIKNASLAEDVRKPQKLSSSPDVAKSKSNPSPDTFKPKCNPSPDAMKSKTHSVLE
AMKPKPNTSPEVTKHKGRHTDNPPSSLGRLAAKPDTETPRSSFKPVPARTTPSESTKSPL
IVDKNEHFTVYRDPALVRPEAETNHVTYLPPHLHPLHSSSHATCLTPSSHHHSHLLPASS
LSPHPSVHHPLLPTVLPAMPPTSLLGGHSRLDSSGLSHLALAHHHPHQQQQFLQQQPPPQ
LLTQTHGGASYNQLGLYPIIWQYHNGTQHSYPPGLSLPGSKWVHPENAVNSDGSLPRNTS
SPWLHQPTPVTSADSLGILSHVPGRPASADPHRPLKISSHSSPPLSKTSADLHKGELESK
VFVDPMRGLVTAHLKQEPDRSRTPNSKELQRLYMDSSHMKQQTQPPRLPLDTSDRTVKYK
EENRRILQESIEVAPFTAKIRSGEPEREPYARIPSLPINGPPKENEHSPSDLYKYKHSAS
QSLPQSNYFTTLSNSVVNEPPRLYPSKELNSLSLSSPLPLGTYTSAGGSAKSLSKPPPLI
KHQPEGEGLVGKISEQLSQQVALNPLTTPAAASERRSPAISPSNQLRSMPALHRAPVFHP
PTQQTLDRKEAVYGRLSPPTLTPIQPVSVAGKVSEQQKPPTLLPELREVKSNVELGSSEP
WRASSDSQSHDKVAQWHSDKSQGKPQAATASVIVRSRTCIKYDCSPGPKSGAKETSGSRP
HTGKNQLDCTKLAETREPGRVIQQNTNREDIFLQYKKNFVRVSQGSFPSSAVAVVNSVCN
SSTDVTTSASAASTYNVLSRGTAELHYPTSATPSSSNINRLEGPVPKCRTPTGPELQECN
ARTASPSGQLPQPGLAPVAQPYSGNFIHLKKHKAALAAAQSRCSSSASESESSSRSSQES
PTITTQDRASPGNPASKASPLPNGQPSQMNQPNYHKLKKAWLTRHSEEDRNTNKVEKTSS
AVSEIIKPCTVNLVASTSSDVEIGKDGKCLEDKMSQEDRKPRRGPSKRPHESCSDSGDDS
DGSDSKHEQRAKRQPKPTYKKKQNDMQKKKGENDKDEDDVKPNGIFRSAKEKTKLKLASS
NGIPRSVLKDWRKVKKLKQTGESFLQDDSCSEIGPNLQKCRECRSIRTKKGEEPTHSPVF
CRFYYFRRLSYSKNGVIRIDGFSSPDQHDEEALSLWAPDAYEENDLDVETSKYILSYIGD
KFCQLVMSEKTAATWIKKDAKIAWKRAVRGVRESCDACEATLFNIHWVCQKCGFVVCLDC
YKAKEKKNSKDKELYAWLKCVKGQPHDHKHLMPTQIIPGTVLTDLVNAMHMLREKFGIKA
HCACANKQNILNKLPCTNGVSQVLQNVLNHSNKLSLCKPEAGQHNLGPKVEANGGSSPAS
DTSTDSKLTPPESQSPLHFLADLAEQKSREEKKENKESAVGKVKEESTDALETLHCKASS
LVANSTEQGSTLRDLLTTTAGKLRLGSTDAGIAFAPVYSTASQTGKSGRTMPNILDDIIA
SVVENKIPADRNTKQSPKAKPQEEARAERRKQAEDVPEQHADIPHCWLYDRRLLWLKDHR
NSNNWKLFRECWKQGQPVLVSGVHRKLNASLWKAEAFSQEFADHQGDLLNCKDGVVSNSG
IKEFWDGFEDLTKRPKSRDGEAIVYRLKDWPSGEEFMALMPSRYDDLMKNLPLPEYSDPE
GNLNLASHLPSFFVRPDLGPRLCCAYGVASSQEQDFGTANLHMEVSDVVSVLVYVGVAKG
NGVLSKTGVLKRLEEEDLDDNVKKRLKDSSETPGALWHVYASRDVEKVQEFLHKISKEQG
VEIPPEHDPVREPGWYLSRKQRQRLLEEHGIQGSTIVQFLGDSVLVPAGALHQVQNLHSC
VQVINDFVSPEHVVHSFHLTQELRSSKEEINYEDKLQVKNIFYHCVKDAVGTLKQCSAEA
QEEEEVNS
NT seq
7767 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcggttgtggaagcgcggccggagctggtggggaagcggttc
ctgtgcgtgagcggagaggcgccgccggagctcgcggagatcgcgcgctggccgtggcgt
gccggggtcatccgcgccgtgagccaccgcgacaccgacaaccccgaactcacggtatac
gtggagtttgatgacctggagtgggagaagcgcgagtgggtgaaggtgtacgaggacttc
cagatctttcttctggagcagcagctcgtctgggctaagaggaaagaaggctctcagctg
cagggcacccgggccaaacagatccagtggcctgctctgacattcaagcctctggtagga
aagagcgttctgggctccatcaccgctgtggaattcttctccgacagacagctggacttc
ctgaccgatgacggagcaagccagccctatcaggatgaagtggacagcttgagtcctgtt
ctcagggacaatccacagcttcatgaagaagtgaaaggctgggtaaaagaccaaaaggtg
caggaaatttttatgcaaggtccctattctttaaatggataccgcgtacgagtttacagg
caagactcagccacccagtggttcacgggcatcattactcatcacgacctcttcagccgc
actatggttgtgatgaatgaccaggtactagagcctcagaacgtcgatccctctatggta
cagatgacctttctggacaatgtggtccattctttgctgaaaggagaaaatataggcatc
acatccagaaggagatcacgctctagccagaatagcaacactgcccaccagaccacagga
gggagaccaagtggcaacacaggaagcactcagggtcattacacacgtgcccaggccaac
agtcccagaccggtgatgaactcatcaggctccaccaccaagcagggtccgcagacccag
cagcaacagtcccagcatgctcagcagcaggtatcccagcagcaccagcagcagctgcag
tcatcaccagggcaacagcgtgggtcccggtcatcacgtaggaagggatcagacagcagc
atccccgatgacgagaagatcaaagaggaaaagatggactctggaggtggaagaggagat
gtttctaggaacaaatcaaaacagatggtgagcaagcggaggaaagctgaggacgaggag
aagaaggctggccttaaacggataaagatggaggcatctgatctttcagagagcagtgac
tctgagaactccaataagaggctcctggactcatcctcagagcaaagctctgaaaatgaa
ctgaaaagtaagggcatttcaaaagccgccgaggaagaggacaagtcccagagctgcaat
gctctggaggagtcagaggccaacagcagggtgtctccctgggaggaggtatctaaggtg
gaaaagattgtcaagccgacagccatggaagtggttccctccgccaagactgaacaaaca
ggggggaggaggtccccggtgcagccttccccactgccccctcccagcccctgtgcacag
cctcagagcttgggtcctgctgaggttcaggggtgcattgtggaaataaaaagcactgtg
aaaactctgcccaaggaccattatagcacaggggcacctagaacacacacaccaaagtgt
gtgattgacatcacagaggactccggctcccaccccgccaccagagagaactcagaggct
gtatctgcccttttggcctctcagaaacgtgaaacctatgtccctgaagccagacatttg
gtgctaaacccttcagcctctgaatgcaggaaaccagagggtgagctgcagcagcagcga
ggtcagagtttgggtagcaagattgagtttgacctctctgacgtgatccgacctgtggct
tcagtaagcgagtcagccgctgtggcagaaagggaaagagaaaaagtacagcagcagtac
ccttcaatcatgccttgcatcaagaacgcctcactcgctgaagacgtgcgaaagccacag
aaacttagctcgtcaccagacgtggccaaatccaagtccaacccttcacctgatacattt
aagcccaagtgcaatccctcacctgacgccatgaagtcgaaaacccacagtgtcctggag
gccatgaagcctaaaccaaacacttcccctgaagtgaccaaacacaaaggacgacacacc
gacaaccctccatcctctcttggccggttggcagccaagccagacacagaaaccccacgc
tccagcttcaagcctgttcctgctcgcactactccctctgagtccaccaagagccctctc
atcgtcgacaaaaacgagcacttcacagtgtatcgtgacccggcactggtgcggccagaa
gccgagaccaaccatgttacttaccttcctccccacctccatccactccacagctcctcc
cacgctacttgcctaacacccagttcacaccaccactcccacctattgcccgcctcttcc
ctcagcccacacccctcggtgcaccaccccttgctccccaccgtgttgcctgccatgcca
ccgacctcccttctaggtggtcactctcgccttgactcaagtggactcagtcatctggct
ctagctcaccaccacccacaccagcaacagcagtttctgcaacaacaaccgccccctcag
ctgctgacccagacgcacggtggtgccagctacaaccagctgggcctatatcccatcatc
tggcagtatcataatggcacgcagcactcctatccacctggacttagcctgcctggatca
aagtgggtgcatccagagaatgctgtgaattcagacggtagcctaccaaggaacacctcc
agcccctggctccatcagcccacccctgtgacctcagcagacagcctcggtattctgagt
catgtcccgggtagaccagccagcgctgacccccacaggccccttaaaatctcctcacac
tccagccctccactctcaaaaacatctgcagatctccacaaaggggaactggagagtaaa
gtttttgtggatcccatgcgtggcctggtaacagcccacctgaagcaggagccggaccga
agccggacacccaacagcaaagagttgcagcgcctctacatggattcatctcacatgaag
cagcagacacagcctccccgcctgccgctggacacgtcagaccggaccgttaagtacaag
gaggagaaccgccgcatcctacaggagagcattgaggtggccccctttactgccaagatc
cggtcaggagagccagagcgtgagccctatgcccgcattccctccctccccattaatgga
ccgcccaaggagaatgaacattcgccgtctgatctttacaagtacaagcactctgctagt
cagtcactgccgcagagcaactatttcacgaccctgtccaacagcgtggtgaatgagcca
ccccgtctctacccctccaaagagctcaactccctttctctctcgagtcccctgcctctg
ggcacttacactagtgccggaggcagcgccaagtccctgtccaagcctcccccgcttatc
aagcaccagccagagggtgagggcctggtggggaagatcagcgagcagctcagtcagcag
gtggccctgaatccactcactaccccagcggcagccagcgaacgccgcagtccagctatt
tcaccctcaaaccaactcaggagcatgcctgccctgcacagggcacccgtctttcacccg
cccacccagcaaacactggaccgcaaggaggctgtctacggtcgcctctcgccgcccacg
ctcacccccattcagccggtcagtgtggctgggaaggtatcagagcaacagaagcccccc
actctgctgccggagctcagggaggtgaagagcaatgtagagctgggctccagtgagcca
tggagggccagctctgactcacagagccacgataaagtggctcagtggcactcagacaaa
agtcaagggaagccacaggcagccacagcctctgttattgttcgctctagaacctgcatt
aagtatgactgctcaccgggccccaagtctggcgccaaggagacgtctggcagtaggcca
catacaggcaaaaaccaactggactgcaccaaactggctgagaccagagaacctggcaga
gttatccagcagaacacaaatagggaggatatttttttgcagtacaaaaagaactttgtc
cgagtctcccagggcagctttcccagctctgcggtagccgttgttaactctgtgtgcaat
agcagtactgatgtaaccacttctgcctctgctgcttccacatacaatgtgctgagtcga
ggcacagctgagctacattatcccacctcagccactccaagcagcagtaacattaacaga
ctggaaggccctgtacccaaatgcaggactcccaccggccctgagctgcaggagtgcaac
gccaggacagcctcccccagtggccagctgcctcagcctggtttggccccagttgcacag
ccctactctgggaacttcatccacctgaagaagcacaaagccgccctggctgccgcccag
tcccgctgctcaagcagtgcctcagagagtgaaagcagcagtcgatcctctcaggaatca
cccaccatcaccacccaggatcgtgcctcgccaggcaacccagccagcaaagccagccct
ctacccaatggtcagccatcacagatgaaccagcccaactaccacaaactgaagaaagca
tggctcactcgccactcggaggaagatcgcaacactaacaaggtggagaagacgtccagt
gccgtctctgagatcattaagccatgtacggtcaacctagtagcgtccacctccagcgac
gtggagataggcaaagatggaaaatgcttagaggataaaatgagccaggaggacaggaag
ccgcgacgaggtccctccaagcggccacacgagtcatgctcggacagcggcgatgactca
gatggcagcgacagcaagcatgagcagagggcaaagaggcagcctaagcccacctacaag
aagaagcagaatgacatgcaaaagaagaaaggggaaaatgacaaggacgaggacgatgtc
aagcccaacggcattttcagaagcgccaaggagaaaaccaaactcaaactggccagcagc
aacggcattcctcgctcagtgctgaaagactggaggaaagtgaagaagctgaagcagaca
ggcgagtccttcctgcaggacgattcatgctcggagatcggccccaacctgcagaagtgc
cgcgagtgccgctcgatccgcaccaagaaaggagaagagcccacccactcacccgtcttc
tgccgcttctactacttccgccgcctgtcatacagtaagaacggagttatccggatcgac
ggcttctcatcccctgaccagcacgacgaggaggccttgagtctctgggctccggatgca
tacgaagagaacgatctggacgtggaaacctccaaatatattctcagctacatcggagac
aagttctgccagctggtcatgagcgagaagactgcagccacatggataaagaaagatgcc
aagatagcctggaaacgggcggtgaggggggtgcgtgagagctgcgacgcatgcgaggcc
acattgttcaacattcactgggtgtgccagaaatgtggatttgtggtgtgcttggactgc
tacaaggcgaaggagaagaagaactccaaagacaaagaactgtacgcctggctgaagtgc
gtcaagggacagccacacgatcacaagcacttgatgccaacgcagattattccaggaaca
gtcttgacggacctggtaaatgccatgcacatgctcagggagaagtttggcatcaaagcg
cactgcgcctgtgccaacaagcagaacatcctcaacaagctcccatgcactaacggcgtt
tctcaggtgctccagaacgtgctgaaccacagcaacaagctttccctgtgcaagcctgag
gctggtcagcacaacttgggaccgaaggtggaggcgaacgggggcagtagcccagccagt
gacaccagcactgatagcaagctcacaccaccagagtctcagtcaccactgcactttctg
gccgacttggccgagcagaaatcccgggaagagaagaaagagaataaggagtcagctgta
gggaaggtgaaggaagagagcacagacgctctggaaacgttgcactgtaaagcttcatct
ctggtggccaacagcaccgagcaaggctccacactgcgagacctgctcaccaccacggcc
ggaaaactgcgcctgggctccacagacgccggcatcgccttcgccccggtctactccacc
gcctcgcagactgggaaaagtggtcgcactatgcctaacatcctggatgacatcatcgct
tcagtggtggagaataagataccggcggaccgcaacactaagcagagcccaaaggctaaa
ccccaggaagaggccagggctgagaggaggaaacaagctgaggacgtgcctgagcagcat
gcagacatcccccactgctggttgtatgatcgtagactgctctggctcaaagaccaccgc
aacagcaacaactggaaactgttccgagagtgctggaagcagggacagcctgtgctcgtc
tcaggggttcacaggaagctcaacgccagcctgtggaaggctgaagctttcagccaggag
ttcgccgaccaccagggggatctgctgaactgcaaggacggagtggtgtccaactcgggc
atcaaagagttctgggacggctttgaggacctgaccaaacggcccaaatccagagatggc
gaggcgattgtgtacaggctaaaagactggccctcaggagaagagtttatggctctaatg
ccttctaggtatgatgatctgatgaagaacctccctctgcctgagtattcagacccagag
gggaatttgaacttggcctcccatctcccctcattctttgtgcgacccgacctaggccct
cgtctctgttgcgcatacggcgtggcatcatctcaggagcaggactttggcacagccaac
ctgcacatggaagtgtccgacgtcgtcagcgtgctcgtttacgtcggagtggccaaaggg
aacggagtcctctccaaaacaggagtgctgaagaggctggaggaagaggatctagatgac
aacgtgaagaagagattaaaggactcgagcgagactcctggagccttatggcacgtctat
gcgagcagagacgtggagaaagttcaagaatttctgcacaagatctctaaagagcagggt
gtggagatcccgccagagcacgatccagtcagggagccgggctggtaccttagccgcaag
cagaggcagcgtctgctcgaggagcacggcatacagggcagcaccatcgtccagttcctg
ggagactcggtccttgtgcctgctggagccctgcaccaggtgcagaacctgcacagctgc
gttcaggtgatcaatgactttgtgtcgccggagcacgtggtgcactccttccacttaaca
caggagctgcgctcgtccaaagaggaaatcaactacgaagataagctacaggtcaagaac
atcttttaccactgcgtaaaggatgctgtgggaacattaaagcagtgcagtgccgaggct
caggaggaagaggaggtgaactcatga
DBGET
integrated database retrieval system
