Ictalurus punctatus (channel catfish): 108274279
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Entry
108274279 CDS
T04658
Name
(RefSeq) retinoic acid-induced protein 1 isoform X1
KO
K19749
retinoic acid-induced protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108274279
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
108274279
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
zf-HC5HC2H_2
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
108274279
NCBI-ProteinID:
XP_017339851
UniProt:
A0A2D0SAU6
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All DBs
Position
2:complement(28453929..28491152)
Genome browser
AA seq
1976 aa
AA seq
DB search
MFESFEKRSTLAEDMQSFRERGGFQGNQRCYQQEPHELSRLENYRHHSQTGQGYEVHALS
AAGMPTAGTSSKDCYGQQPYPSYGSSSAQSKKSYRGGKAPSQHLQAGYSSHMNSGYSSQY
MSEGHLQQKWDESGQISQYEQDIVGHLEPGASGASQYLEQNMLAISQSQCHLPSQPSAPV
YTSPHQQGHPPNPTPSPLMYPQSHIHFPQHSQPPSSTSSSYLEKCNPIPHGYKSGYGMPL
NAQYSRQMGNHSSLKQSSYRPQNNYGYQQPPSRGGFEQQASLQGMSGTPESLQKFPHYNQ
PQQNYCITDLSVRSPEQYYQNCSPSSSHSPARSVGRSPSYSSTPSPLMPNPDTFQYGQPI
NPSSSSVNLQDPSMLMPPHTHPSPSVNHQSQSYSSSMKDRFSEKLFSNPSLWSLNALTSQ
VENISNNVQQLLLSEALMANKKGNKRNQPKKGEEYRGNLKAMEDSPCPDSQQGPLPSDSY
GTPRSMPADLLEVGYSSSTEDQMERNYYYFGQGKGPTHASAHSQLSLDAVSTCSMNSTDD
MSVRSGDSDRSIHSAASEDNLSCDPRVQRVPFGEEQHSSLRNIRNERSPISVTAPSPMKQ
ESNSPIGIKQSESTQKENFEESAWTERITDEKELGKMKLATEHKCKGEVFEASEKRQEWL
EDEKCPTFFHKLNKEVSNESYSYETEDSIYQKLKTKYETEEDDFAGKCCDTSSKGNEDSE
KKSEMFKSQNNGEDPITASPAISKDVPESNLYLPRKEENSETTHLTSECESSKERLSTSE
RQNDVFEEQQSALSYSVSKVREKGSLTSNEDVINNKAKLEEFSSEACNNQGETASGPLRV
NTEIAETHVQDIAHRSSERACDIAPQSHTVRSGFSALNEKTTPQNQARDHIDHNDAKVLE
PDSPQLPGKSIISSAPSWADTPPSPQKGDEDVEPGLSCPSATKPEPMAPSAHPRLLGRKH
ARGRRRLIHSNAGMRSVERDEAPPSPQKPSMLSSNSAILSDRMEAVQLDISSQTPKLLTE
GLPSRMCTRSLGSQSTPKVCSQERRKPGPKPSSKPGPKPVTKPGLKPSSKPVLKPGPKQG
LKPGPKPGPKPSPKPGAKPSLKSGPKQNSKPGPKPVAVPSVKPSPKPGPKPAAIPALKPS
PKPGLKPSPKPGLKSTEGVTPKGPGRPKGLTSRIKSMKYENNIDAITEHIEDTSCISENP
EQQENTAVTLETVVGTTLCTSIESTIGSTLDTALDVSFVNSVAKDQKSMVLRSRKQTREK
TTEDKEKERDTSTETSAIKPIESHIQKVAQPCENLTSTLISSNYEDICTDSLSQLNEQIV
SVSIKRKSSLQVPDPVKKKKGLKVSQTKTQEPHPEELVLEAQGSKGRRKRGIKLEPSACS
TLTKDNVPLEDISDTPCVAPQCPTKTKYLPPRKGRGLKYEAMVQKITSPASKKQPLNIQP
DVVLEELATKPSPELHVTEKRKTVNTTMVTPEEGESTVSIEETPDTAGIQTPRKKRRKWA
TVESTDTPDIALETGSLIINTPRLAKQRAIKNNHEMHLKQRKKRRKSTELAKSVPIVETH
EQTNVFISPAAPPPSPPPTSSFILNTEQKTKIEQLSIEIGSTVIKPKRGRRPSLKKKQED
FSQQIGNEEGLKVKKKPGPKKKIQQNNNGTIKVTVKRLKTKLKCKKECIPTVKGIVSDFL
KMQESEGKHSFKPYVRIDSSKKLASLCTIINKPEEEHLLIQTRKKNLEKNKIIPNSSIML
QGPLVNRSLTDRCLICCLCGKPANYRELGDLCGPYYSENNIPRKTLSLTYHEDFRQNRDR
DQDEVAICSAEQLNDMKRGGEKDLLQEGTSEGDCRQVMRERRAQLKSHLGLRTRFKRLQL
LQGRAGGGVPPAGEEGSYSVLQRLQLEAEVNEHWAHESCAVWTSGVILIAGKLCGLKEAA
QESTLTKCSKCQSEGASISCSWKSCIHKYHYVCAKETGCTFDEDTFSIKCPKHQAM
NT seq
5931 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaatcctttgaaaagaggagcaccctagctgaagacatgcagtccttcagagag
cggggtggtttccagggcaaccagcgctgctatcagcaggaaccccatgaattatctcgc
cttgagaattacagacatcacagccagaccggacagggctatgaggtgcacgctctttct
gctgcagggatgccaacagcaggaacaagctctaaggactgttatgggcagcagccctac
cccagctatggcagcagttcagctcagagcaagaaatcatacagaggaggaaaagctcca
agccagcacctgcaggctggctacagtagccacatgaattctggatattcatcccagtac
atgagtgagggacacttgcaacagaagtgggatgagtctggtcagatatctcagtatgaa
caggacattgtgggtcatcttgagcctggagccagtggtgcatcccaataccttgagcag
aacatgctagccatttctcaaagccagtgccatctcccctcccaaccctctgcacctgta
tatacaagcccccatcagcaaggtcatcctcccaatcctactccatctccattaatgtac
ccacagagccacattcatttccctcaacactcccaaccaccctcctccacctcatcatct
tacttggagaaatgcaatccaattcctcatggctacaaaagtggctacggaatgccactt
aatgcccagtattcaaggcagatgggtaaccacagtagtctgaagcagagcagctatcgg
ccacagaataattatggctaccaacagcctccttcaagaggtgggtttgaacagcaggct
tccttgcagggaatgtcgggtacaccagagagtcttcaaaagttcccacattataatcag
ccccaacaaaactactgtataaccgatctttctgtgaggtcacctgaacagtattaccag
aactgcagtccaagctccagccactcacctgcaaggtctgtgggtaggtcaccctcatat
agctccacaccttctcccttaatgcccaatcctgacacattccagtatggccaaccaatc
aacccttcctcttcttctgtgaatctacaagatccaagcatgttaatgcctccacacacc
cacccatccccaagtgttaatcaccaatctcagagctactccagttctatgaaggaccgt
ttttctgagaagcttttttctaacccgagcttgtggagccttaatgctctgacatctcag
gtagagaacatctccaacaatgtccaacaattattgctctcagaagctcttatggccaac
aaaaaaggtaacaagcgaaatcagccaaaaaagggagaggaatataggggtaacttaaag
gcaatggaggactctccatgtcctgatagtcaacaaggtcctctccccagtgattcttat
ggcacccctagatctatgccagctgatctactagaagtaggatactccagcagcactgaa
gatcagatggaacgtaactactactactttggtcagggcaaaggtccaacacatgcttca
gcacattctcaattgagtctggacgcagtttctacctgctccatgaactcaacagatgac
atgtctgtcaggtcaggtgactcagatcggagtatacatagtgccgcctctgaagataat
cttagctgtgaccctagggtgcagagagtgccatttggagaggagcagcacagttctctt
agaaacattagaaacgaaaggtccccgattagtgtaacagctccaagcccaatgaagcag
gaaagtaattctccaataggcataaagcaatctgagagtactcagaaggagaattttgag
gaatctgcctggactgagaggataactgatgaaaaagaacttggaaaaatgaagctggcc
acagaacataaatgcaaaggagaagtttttgaggcatctgagaaacgacaggaatggtta
gaggatgagaagtgccccaccttttttcataagttaaataaagaagtgtcaaatgaaagc
tactcttatgaaacagaagacagcatctatcagaaactgaaaaccaaatatgagacagag
gaagatgactttgctgggaagtgttgtgacaccagcagcaaaggaaatgaagattcagaa
aagaaatctgaaatgttcaaatcacagaataatggcgaggaccctataacagcatcacca
gctatttcaaaagatgtgcctgagtccaatctatatttgcctaggaaagaggaaaactca
gaaacaacccatctcacctctgagtgtgaatcttcaaaggaaagactgtcaacctctgag
agacagaatgatgtctttgaggagcaacagtctgccctatcctattcagtctctaaagta
agagagaaaggaagtctgacatccaatgaagatgtgattaataataaagcaaaactagaa
gagttctcttcagaggcctgtaataatcaaggggagacagcaagtggaccacttcgtgtc
aacaccgaaatagctgagacccatgtccaagatatagcccacagaagcagtgaaagggca
tgtgacattgcacctcagtctcacactgtcaggagtggcttctcagctctcaatgagaaa
acaacacctcagaatcaggcgagggatcacattgatcacaatgatgcaaaagtgctggag
cctgactcccctcagttgccaggcaagtcaataatatcttccgcaccatcttgggctgat
actccaccatccccacagaaaggtgatgaggatgtggaaccaggtttaagctgtcccagt
gcaacaaaaccagagcccatggccccttctgcacatccaagactattgggcagaaagcat
gcaaggggtaggagaagattaattcattcaaatgcagggatgaggagtgtggaaagggat
gaggctccaccatctcctcaaaagcccagcatgctctcaagtaacagtgctatcttatct
gatcggatggaggctgttcagctggacattagcagtcaaacaccaaaacttctgacagaa
ggtttaccatcccgtatgtgtactcgttctttagggtcgcaaagtaccccaaaggtttgt
tctcaagagagaagaaaaccaggtccaaaacccagttcaaaaccaggaccaaaacctgtc
actaagcctggcctaaaacctagttcaaagcctgttttaaaaccaggtccaaaacaaggc
ctaaaacctggaccaaaaccaggaccaaagccaagtcccaaacctggtgcaaagccttct
ttgaagtctggtccaaaacagaactcaaaaccaggtccaaaacctgtggctgtgccaagt
gtaaaacctagtccaaagcctggcccaaagcctgctgctatacctgctctgaaacctagt
ccaaaacctggtttaaagcctagtccaaaacctggtttaaagtccacagaaggagtaacg
cctaagggccctggtcggccaaaaggcctcacctccaggatcaaatcaatgaaatatgaa
aataatatagatgccatcacagaacatatagaagatacaagctgcataagtgaaaaccct
gaacaacaagaaaacactgcagtcactctggaaactgttgttggtactactttgtgcact
tcaatagaaagcacaataggttccactttggacactgcgttggatgtttcttttgtaaat
tctgtagcaaaggatcagaagtccatggtattaagatctcggaagcaaacacgggaaaag
acaacagaagacaaggagaaagagagagacacatcaactgagacatcagcaataaaaccc
attgagtcacatatacagaaagtggctcagccctgtgagaacctaacatcaaccttaata
tcatccaactatgaggatatctgcacagattcacttagtcaacttaatgagcagattgtg
tcagtttcaatcaagagaaaatctagtttacaagtcccagaccctgtcaagaaaaagaaa
ggtctgaaagttagtcaaacaaaaacacaggaacctcacccagaggagttagtattggaa
gcccaaggatcaaagggaaggcgaaagcgaggcattaaattagaaccatctgcttgcagc
actttgaccaaagataatgttcccttggaagatatcagtgacacaccttgtgtggctcct
cagtgtcctactaaaacaaaatatctgcctcctaggaaaggcagaggactaaaatatgaa
gcaatggttcagaaaatcacatccccagcatccaaaaaacaacctctaaatatccaacca
gatgttgtgctagaagagttagcaacaaagccatcaccagaactacatgtaacagaaaaa
agaaagacagtaaacactacaatggtaacaccagaggagggtgagagcacagtaagcatt
gaggagactccagacacagcaggtatccaaactcctcgaaagaagcgcagaaagtgggcc
acagtggagagcacggacacaccagatatagcattggagactgggagcctcattatcaac
acaccaaggctagccaaacagagagccattaaaaataaccacgagatgcatctgaagcag
cggaagaagagaagaaaaagcaccgagcttgcaaagagtgtgccaattgtggaaacacat
gagcagactaatgtgttcatctctcccgcagcacctccaccatcaccaccaccaacttcc
tcattcattctaaacacagaacagaagacaaagattgaacagctttcaatagaaataggc
tcaacagtaattaaaccgaaaagaggcaggcggccatcacttaaaaagaaacaggaagac
ttcagtcagcaaataggaaatgaagaaggtctaaaggtaaaaaaaaagcctggacctaaa
aaaaagatccaacagaataacaacggcaccatcaaggtcaccgtaaagagacttaagact
aaattaaaatgcaaaaaggaatgtattcctactgtgaaagggatagtgtcagatttttta
aaaatgcaagaaagtgaaggtaagcattctttcaaaccatatgtacgcattgacagctcc
aaaaagcttgcttccctttgcacaatcataaacaaacctgaggaagagcatctgctcatc
cagacaagaaaaaagaacttggaaaaaaacaagataataccaaactcatcaataatgctc
cagggccccttagttaacagaagcctaaccgacaggtgtctaatatgctgcctgtgtgga
aagccagcaaattacagagagcttggggatttgtgtggcccatactactctgagaacaac
ataccacggaaaacactgtctttaacgtaccatgaagacttcaggcaaaacagagacaga
gatcaagacgaggtggccatatgcagtgctgagcaactcaatgatatgaagagaggggga
gaaaaagacttacttcaggaagggacaagtgaaggagattgcaggcaggtgatgagagaa
agaagggcacaacttaaaagtcatcttggcttgcggacgaggttcaaaagactgcagctg
ttgcaagggagagctggtggaggagttccccctgctggtgaggagggctcttactctgtt
ctacagaggttacagctggaggctgaggttaatgagcactgggcacatgagtcctgcgct
gtctggaccagtggtgtgatcctcatcgcaggcaaactttgcggacttaaggaagctgca
caggaatctacactcacaaaatgctctaagtgccagagtgaaggagcctccatcagctgc
agctggaagagctgtattcataaataccactatgtctgcgccaaagagacaggctgcaca
ttcgatgaagacactttctcgataaaatgtccaaaacaccaggctatgtaa
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