Ictalurus punctatus (channel catfish): 108275156
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Entry
108275156 CDS
T04658
Symbol
si:dkey-225n22.4
Name
(RefSeq) collagen alpha-1(XXI) chain
KO
K16629
collagen type XXI alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
108275156
NCBI-ProteinID:
XP_017341298
UniProt:
A0A2D0SF67
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Position
1:28943371..29002251
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AA seq
933 aa
AA seq
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MLILRLLSMLMLFTCIHSTEKEDIRAGCSTAANDLVYIIDGSWSVGYKDFDTAKRWLVNI
TSGFDVGPHYSQVAVVQFSDTPRLEIPLGAHQTVQELIEAIQAIRYMGGNTQTGRAIKFA
VDHVFASSKRSDTSRNRIAIVVTDGKSQDDVVDASIEARAQGITVFAVGVGSEITTSELI
AIANTPSSYYVLYAQDYTTIDRIRDSMEQKLCEESVCPTRIPVASRDEKGFELILGMKIH
QKAKKIQGSLLSETAYFLDKGVDITEDTKEIFPEGLPPSYVFVATLQLKGTASREKFDLW
RVLSKDQEVQVAVTLHGEENSVIFTTTNMASGEQVVTFDAQGLQTLFDRRWHQLKILVKP
TRVVCFVDDQLIQELDLEPVVPIFINGKTQIAKHYNAHATIPLEIQKLRLYCDPMQSERE
TACEIYSVDDERCPTNREVPEEKEECDCSQGNPGPPGSKGEKGENGLPGHDGKPGIKGER
GTPGQPGKSGQKGEAGLRGTIGDSGVKGSKGERGQQGLPGNQGPPGPKQPQGDKGEQGPP
GEPGPKGEPGLPGSKGPAGTIGPKGDKGDDGQPGTDGTQGVPGIRGLPGEAGPSGPQGAR
GSPGQKGSSGPKGPPGIQGPPGSSGADGQIGPKGSPGQQGSPGRPGVPGEKGSQGEPGFL
GLQGAVGLPGFKGHKGDMGEPGPMGAQGERGSDGTPGVPGPPGEAGLRGSKGERGTPGDP
GYRGPDGKKGDLGHIGVVGPRGFPGQDGSPGHPGLPGYPGKPGKSPSDEHLKKLCGDALR
QELSQLIQTMIPRSCEPCEMVEGPPGPPGAQGPKGSTGPQGYPGRPGSQGYPGSAGFQGP
PGVKGDMGPRGFKGNKGEGRLGQPGPPGERGIQGLHGTDGIGLPGPPGTPGKTGSPGLPG
KRGAPGPAGVCDMSICYAAYNLREEHYSKGPNF
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgttaatattaaggttgctgtcaatgctgatgctctttacatgcatacattccacagaa
aaggaggatattcgagcgggttgcagtacagctgcgaatgatcttgtgtacatcattgat
gggtcctggagtgtgggctacaaggactttgatactgccaagcgctggcttgtcaacatc
accagtggctttgatgtaggcccccattactcccaggtggctgtagtgcagttcagtgac
actcctcggctagagattccgcttggcgctcatcaaactgtccaagagctcattgaagct
atccaggccatccgttacatgggaggaaacacacagacagggcgtgccatcaagtttgca
gttgatcacgtgtttgcttcctcaaagcgcagtgataccagtaggaatcgcattgccata
gtggtgactgatgggaaatctcaggatgatgtggtggatgctagtatagaggctcgagca
cagggaatcactgtatttgcagtgggagtgggctcagagatcaccacctcagagctgatt
gccatcgctaacacaccatccagctactacgtgctgtatgcacaggactacaccaccatc
gatcgcatacgagactcaatggaacaaaagctttgtgaagaatctgtttgtcccacacgt
atccctgtggcctctcgagatgagaagggctttgagctgatactcgggatgaaaattcat
cagaaagccaagaagatacagggctctttgctgtcagaaacagcctacttcctggataaa
ggggtggacattactgaggacacaaaggagatctttccagagggtcttccaccatcctat
gtgtttgtggcaactctgcagcttaaaggcactgcaagcagggaaaagtttgacctgtgg
agggtactttctaaagatcaagaagtccaagtggctgtgacactacatggagaggagaat
tctgtcatctttaccaccaccaacatggcaagtggggaacaggtggtcacttttgatgcg
caaggccttcagacactctttgatcgacgctggcaccagctgaagattctagtcaagcca
acacgtgttgtctgttttgtggatgaccagctaatacaggaactggatttggagccagtt
gtgcccatttttatcaatgggaaaactcagatagccaaacactacaatgcccatgctacg
attcctttggaaatccaaaaactaaggctgtattgtgatccaatgcaaagtgaacgagaa
actgcatgtgagatttattctgtggatgatgagaggtgtcccacaaaccgagaagtgcct
gaagaaaaggaggagtgtgactgcagtcaggggaaccctggaccacctgggtcaaagggt
gaaaaaggagaaaatggacttcctggtcatgatggtaagcctggcatcaaaggtgagaga
ggaacacctggacagccaggtaaatcagggcaaaagggtgaagctggtttacgtggaacc
ataggtgactcaggagtaaagggctccaaaggtgagaggggacagcaagggctgcctgga
aatcaaggaccaccaggtcccaagcaacctcagggtgacaaaggtgaacaagggccccct
ggtgagcctgggccaaagggggaaccgggcctccctggcagtaaaggaccagccggaaca
attggacctaagggtgataagggagatgatggacagcctggcacagatggaacacaaggt
gtaccaggtattcgtggactacctggggaggcagggccaagtggacctcagggggctaga
ggatcacctggacagaaaggatcttctggacctaaaggacctccaggtatccaggggcca
cctgggtcctctggagcagacggacaaattggccctaagggaagtccaggacaacaggga
tcacctggtcgtccgggtgtgccaggcgaaaagggctcacaaggagaaccaggttttcta
ggtttacaaggtgctgttggtcttcctggctttaaaggacataagggggatatgggagaa
cctggtccaatgggtgctcagggtgaaagaggaagcgatggaacacctggtgtgcctggt
ccaccgggtgaagctggactcaggggaagcaaaggagagagaggtactccaggagatcct
ggttatagagggcctgatgggaaaaaaggagacctaggacacataggagtagttggacca
cgtggttttccaggacaggatgggtcaccagggcatcccggtcttccaggatatcctggc
aaacctgggaaatctccttctgatgaacacttaaaaaagctctgtggagatgcattaaga
caggagctctcccagctgatacagacaatgattcctcggagctgtgaaccctgtgagatg
gtggaagggccgccgggtccacctggagctcagggtcctaaaggttccactggaccacag
ggctatccaggcaggccaggctctcagggttacccaggctcagctggcttccagggcccc
ccgggggtcaaaggggacatgggaccaaggggctttaagggcaacaaaggggaaggcagg
ctgggacaacctggaccccctggagaaagagggatccagggtctgcatggcactgatgga
attggattacctggtcctccgggaacaccgggcaaaactggctcaccaggtcttccaggc
aagcgaggtgccccagggccagctggagtatgtgacatgtccatctgctacgcggcctac
aacctcagggaagagcactacagcaaaggcccgaacttctga
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