Ictalurus punctatus (channel catfish): 108275892
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Entry
108275892 CDS
T04658
Symbol
rarga
Name
(RefSeq) retinoic acid receptor gamma-A isoform X1
KO
K08529
retinoic acid receptor gamma
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108275892 (rarga)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ipu03310
]
108275892 (rarga)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
108275892 (rarga)
Nuclear receptors [BR:
ipu03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
108275892 (rarga)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
108275892
NCBI-ProteinID:
XP_017342464
Ensembl:
ENSIPUG00000022340
UniProt:
A0A2D0SID2
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Position
15:4511551..4549164
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AA seq
509 aa
AA seq
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MATNRGHMPGFPPAVYPFAFNSMRSHSPFDLMANGSLFGRFGADLPKEMAALSVETQSTS
SEEMVPSSPSPPPPPRVYKPCFVCQDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRD
KNCQINKITRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKDVKEEILPVESYELSGELEE
LVNKVSKAHQETCPSLCQLGKYTTNSSSDHRVQLDLGLWDKFSELSTKCIIKIVEFAKRL
PGFTSLTIADQITLLKSACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLT
DLVFAFAGQLLPLEMDDTETGLLSAICLICGDRMDLEEPQRVDRLQEPLLEALKIYARRR
RPNKPHMFPRMLMKITDLRGISTKGAERAVTLKMEIPGPMPPLIREMLENPEAFEEQPEC
SESKAEPAPPPPPPPPPPPTVPPFTMKTEREDEEESWATENGSEPSPEEEDDEDEDAEED
RGTDSDGEAWPGQEPNVDMSRKSHGGRAQ
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaatcgtggtcacatgcccggcttcccgcccgccgtctacccattcgccttc
aactctatgcggagccactccccctttgacctgatggccaatggcagtctcttcggtcgc
ttcggggcggaccttcccaaagagatggcggccttgtctgtggagactcagagcaccagt
tcagaggagatggtacccagttcaccctctccacccccgccacctcgtgtctacaagcca
tgcttcgtgtgccaggataagtcgtcgggctaccactacggcgtcagctcctgtgagggc
tgcaagggcttctttcgccgcagcatccagaagaacatggtgtacacctgccaccgtgac
aagaactgccagatcaacaagatcacacgcaaccgctgccagtactgccgcctgcagaag
tgctttgaggtcggcatgtccaaggaagctgtgcggaatgaccgaaacaagaagaagaag
gacgtgaaggaggaaattttgccggttgagagctacgagctgagtggtgaactggaggaa
ttggtgaacaaagtgagcaaagcacaccaagagacctgcccttcattgtgccagctggga
aaatacaccacaaactccagctcagatcaccgcgttcagttggaccttggattgtgggat
aagttcagtgaactttccaccaagtgcattatcaagatcgtggagtttgccaagcgcctc
cctggcttcacatccctcaccattgctgaccagatcaccctgctcaaatcagcctgcctg
gacattctgatgctgcggatctgcacacgctacacaccggagcaggatacaatgactttc
tcagatggactcactctaaaccgcactcagatgcacaatgcaggcttcggtccactaact
gatctggtctttgcctttgctggccaacttttaccgctggagatggacgacaccgaaaca
ggactcctcagtgccatctgtctgatctgtggagaccgtatggacctagaagagccccag
cgtgtagatcgtctacaggagcccttgctggaggcactgaaaatctacgcccgccgccgc
cggcccaacaaaccccacatgttcccccggatgctgatgaagatcacagacctgcgtggc
atcagcaccaaaggagcagaaagggcggtcacattgaagatggagatcccgggcccaatg
ccacctctgatccgggaaatgttggagaatccggaggcgtttgaagagcagccggagtgc
agcgagagcaaagctgaaccagctcctcctcctcctcctcctccccctcctcctccaaca
gttcccccgtttaccatgaagacagagcgtgaggatgaggaagagagctgggccactgag
aatggaagtgagccatcaccggaggaagaagatgacgaagacgaagatgccgaggaggac
aggggaacggacagtgacggagaggcctggcctggtcaggaacctaatgtggacatgtcc
agaaagagccatggtggaagggcccaatga
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