Ictalurus punctatus (channel catfish): 108276222
Help
Entry
108276222 CDS
T04658
Name
(RefSeq) collagen alpha-1(XXIV) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108276222
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108276222
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108276222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
108276222
NCBI-ProteinID:
XP_017343204
UniProt:
A0A2D0SKH7
LinkDB
All DBs
Position
15:7822128..7910801
Genome browser
AA seq
1676 aa
AA seq
DB search
MHLGAQRTRGGRVAQTRALLLLLSVCFTTLSAEEHSQTQGVDLILQLGLSSRRDVTHSSW
MMTSPPLISSLPSLTILPPGVGVTLDRDAMIEAPVVSVLPAGVGKEFSLIVSLNAKHATN
AFLFSVRDGMDRLQFGLQLLPNRVVVYTGDKASIYFSYEVQDGRWHSFALAVRPRSVSFF
AQCGGLHYSEETLTRPRMVVSNGRVAIGRISSRAAQFEGSLCQLEIYPSAQVAAHYCDYV
KKNCRLADTFRSPFPSTSPSLTSSVTSPTPSEKGTRNPANSTLRKSMDKISPTTASFWNT
LRSSTTRTISPSPSPFRPTHSPDLRTTTSTPPSEGRPYEENNTEDQQLLGRPRATRATPN
VTSHHRKNHLSNDNGSQLPDLSEPQMKLNGTTLYRQQGYNNQLERLEEYGEERTYDSGVY
GYDYGFEDGDYFLDYDGFEGLKGDPGPPGSPGPPGLPGPAGKRGPRGPPGPHGIPGPPGL
PGPKGAKGDPGLSPGQATKGEQGERGPPGLPGPKGFPGPEGPKGYPGPPGQPGEQGLPGL
PGMVGAAGYPGRQGLAGPEGNPGSKGVNGFIGPPGAPGAPGIQGERGIPGPVGKNGPKGR
QGVIGDVGERGPPGPDGNQGPVGATGTGGFPGLRGNPGPEGLRGLPGIVGHQGLPGGVGP
PGLKGDKGEPGLRGEPGDYGYQGDKGAAGILGPPGPRGKPGPMGKTGDLGAPGPPGPPGP
EGFPGDIGVPGPNGPPGPKGVQGARGPPGPLGPKGTEGDEGPLGPPGSPGPTGRQGRKGY
IGEPGPEGPKGEVGDQGNVGKSGPPGEEGLPGIPGVAGPPGEKGDRGPAGPLGPPGEKGS
MGYPGLPGGPGDVGPQGPPGLTGPRGTPGIPGTKGRRGPRGADGPPGEPGPEGIKGEKGG
PGLKGATGFVGKAGSPGKRGSPGPPGVAGPPGSSGERGPHGEPGPKGPPGEPGADGEQGP
EGPPGPEGEQGPAGEPGSKGEIGPAGTEGEQGQEGVRGPPGPAGEDGPQGKDGPKGEQGD
HGAMGEPGERSEVGDPGPPGPPGDAGIKGFPGPEGKQGSPGKRGRHGKKGDHGLAGQPGE
MGSAGETGHEGERGLKGARGTRGPPGQAGVMGPQGEPGMEGYTGHAGKPGPPGPPGPKGE
KGYPGEDSKTPGLPGPLGEPGPPGERGDRGDPGDNGYQGHVGVTGARGSVGQQGAPGLPG
LSGETGPKGDKGTQGLPGKNGAQGQTGSPGPEGPVGLPGPKGMMGYPGPDGLPGLPGLPG
LPGLIGQTGQHGTSGIEGSAGLPGPRGEVGLPGPIGDRGEPGIQGERGLPGDRGPAGAKG
LQGAPGDQGRKGDPGVKGQLGEVGDPGILGFQGFPGPKGPSGDLGFAGVPGPKGPLGTLG
FTGPVGPVGMIGPVGRPGLQGPKGGAGEMGPQGPRGTPGPRGPPGAPGPPRRVGAMTTAM
EYDTPVREGYQNAEASVSVQNAEVLRTLHYLSAIVSDIRTPAGTRENPARFCKDLLDCKP
KMADGMFWIDPNLGCSSDAIQVFCNFTAGGQTCLIPLATDKVALGVSKVQMKFLHLLSVE
ATQSISLHCYSEPDTTSSSSSSITSSIFSSITTSSTQTPGNVRFYGWNGQVLERSSVPHH
VLQDNCGVRDGQWHHSRFLLHTQDPTLLPVVDVQGFPPRSTGPEQRHLEVGHVCFL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgcatttaggagcccaacggacaaggggcggccgcgttgcacaaacgagagccctcctt
ctgctcctgtcagtatgtttcactacactatctgcagaagaacattcacaaactcaaggt
gtagatcttattctccagctgggcctgtccagccgcagagatgtcacccactcctcttgg
atgatgacctcacccccgcttatttcttccctcccatctctcactatccttccccctggg
gttggggtgactctggaccgtgatgccatgattgaagcccctgtagtgagtgtccttcct
gcaggcgtggggaaggagttttccctgatagtgagcctcaacgccaagcatgccaccaat
gccttcctgttcagtgtgcgggatggaatggaccggctccagtttggtttgcagcttctg
cccaatcgggtggtggtgtacacaggtgacaaggcatccatctacttcagctatgaagtg
caggacggacggtggcactcgtttgctctggcagtgcgtccacgctctgtgtcctttttt
gcccaatgtggggggctacactacagtgaagagacactgaccaggccacgaatggtggtc
tcaaatggccgggtggccatcggaaggataagctccagggcggcacagtttgaaggctct
ctatgccagctggagatatatccatcagcgcaggtcgcagcacattactgtgactatgtt
aaaaaaaactgcagactggcagacactttccgatctccattcccttcaacatcaccttcc
ctaacgtcttctgtgacctcacctactccttctgaaaaaggcacgcgaaacccagccaac
tccacactcaggaagtctatggacaaaattagccctacaactgcatccttttggaataca
ctgagatcaagtaccactcggactattagtccatctccgagccctttcaggccaacgcac
tccccagatcttagaactacaacgagcacccctccaagtgaaggtagaccctatgaggag
aacaacactgaggatcagcagctgcttggaagaccccgtgccactcgggccactccaaac
gtgacctctcaccacaggaagaaccatctgagtaacgacaatggctcccaacttccagat
ctctcagagcctcaaatgaagctgaacggtacgaccttatacaggcagcaagggtacaac
aaccagctggaacgccttgaggaatatggtgaggaacggacatacgactcaggggtatac
ggatacgactatggatttgaggatggagactattttttagactatgatggttttgaaggt
ctgaaaggggatccaggccctccgggttcccccggtccccccggtctccctgggccagct
ggaaagagaggaccacggggtcctcctggtcctcatgggattcccggccctcctggttta
cctggccccaagggtgcaaaaggagaccccgggctgtccccaggtcaggcgacgaaagga
gaacagggtgagagaggaccacctggactaccaggccccaaggggtttccaggtccagag
ggtcccaaaggctatccaggaccaccgggtcagccaggagaacagggtttgccaggattg
ccgggcatggtcggggcggcaggttaccctggcaggcagggactggcaggcccagaggga
aacccaggctctaaaggtgtcaatggttttatcggaccaccaggagcaccaggagcaccg
ggcatacagggagaaagagggataccaggacctgtggggaagaacggacccaaaggaaga
cagggcgtgattggagacgttggggaaaggggtcctcctgggcctgacgggaatcaggga
cctgttggagcaaccggcaccggtggcttcccgggcctcagaggcaaccctgggcctgag
ggacttcgtggactacctggcattgttggacatcagggcctgcctggaggcgttggacca
cctggattgaaaggtgataagggagaacctggattacgtggggaaccaggagactatggc
taccagggtgacaagggggctgcaggtattcttggaccaccaggcccacgtggaaaaccc
ggaccaatggggaaaacaggtgacctaggtgccccaggaccaccggggcctcctggacct
gagggatttcctggagacatcggggttcctggtcccaacggtcctccaggcccaaagggt
gttcagggagcgaggggacctccagggcctttggggccaaagggaacagagggagatgaa
ggccctttgggtccacctggcagtcctggccccactggcagacaaggaaggaaaggttat
attggtgagccaggacctgaaggaccaaagggtgaagtcggtgaccagggaaacgtcggc
aagagcggccctccaggagaagaaggacttccaggaattccaggcgtggctggcccacct
ggggaaaaaggagatcgtggtccagcagggcctttgggtcccccaggagagaagggttca
atgggctatccaggtttgccaggaggtcctggagatgttggcccacaaggcccaccaggt
ctgacgggtccaaggggtactccaggtattcctgggacaaaaggaaggagggggccaaga
ggagccgatggaccacccggagagccaggtccagagggcatcaagggagaaaagggcggc
ccaggcctgaaaggagctacggggtttgttggcaaagcgggaagtccagggaaacgaggc
tctccagggccaccgggtgttgcaggtccacctggaagttctggtgaaagaggacctcat
ggtgaacctggacctaaagggccaccgggggaaccgggagcagacggagagcaaggacct
gaggggcctccaggacctgaaggtgaacagggacctgctggagaacctggatccaagggt
gaaatcggacctgcgggtactgaaggagagcaagggcaagaaggcgtaagggggcctcca
ggtccagcaggagaagatggacctcaaggaaaggatgggccaaagggtgaacaaggtgac
cacggtgctatgggagagcccggtgaaaggagcgaggtcggtgaccccggacctccagga
cctcctggagatgccggcataaaaggattcccgggaccagaaggaaaacaaggatcacca
ggcaaacgtggacgtcatggaaagaagggcgaccacggtctggcgggacagccgggtgag
atgggttccgcaggcgaaactggacacgaaggagagcgaggactaaaaggagctcgtgga
accagaggaccaccgggtcaagccggagttatgggaccgcagggggaaccaggaatggaa
gggtacacaggtcatgctggcaagcctggtccacctggccccccaggacctaaaggtgaa
aagggttatccaggagaggacagtaagactccaggactgccggggcccttaggtgaacca
ggtcctccaggtgagagaggtgaccgaggagacccaggagacaacggatatcagggtcac
gttggggtcaccggtgctcgagggtcagtgggacagcagggagcgccaggattacctgga
ctgtctggagaaacaggacctaaaggagataaaggaactcagggactaccaggaaagaat
ggtgctcagggtcagacgggttctcctggtccagagggacctgtaggtttgccagggccc
aaggggatgatgggatatccaggacctgatggtcttccaggcttgcccgggctaccagga
ctgcctggtttgattggtcaaacaggtcagcatggcacgtcaggcatcgaggggagtgcg
ggacttcctggaccgcgtggtgaggtcgggctgcctggtccgattggagacagaggagag
cctggaatacagggagagaggggtttgccaggtgacagggggccagcaggtgctaagggc
ttgcagggtgcccccggagaccagggcagaaaaggcgatcctggggtcaaaggacaactg
ggggaagttggagacccaggcatattaggatttcagggtttcccaggaccgaagggtccg
agtggagatttaggctttgctggagttccaggacccaaaggaccgctgggtacactgggt
ttcacaggtcctgttggtccagtcgggatgatcggcccggtcggaagacctggtctgcag
ggtcctaaaggaggagcaggcgagatgggaccccaggggccacgcggcactccaggacca
aggggtcctccaggtgctccaggaccaccgagacgcgtgggagccatgacgaccgccatg
gaatacgacacaccggtgcgtgagggctaccagaacgccgaggcatccgtgtccgtgcag
aacgccgaggtcctcaggactctgcactacctgagcgccattgtctctgacatcaggacc
ccggcaggcacccgggaaaaccccgcccgcttctgcaaagacctgctggactgcaaaccc
aagatggccgacggaatgttctggatcgacccgaacctcggctgctcgtctgacgccatc
caggtgttctgtaacttcacagctggaggccagacttgccttatccccctcgctacagat
aaggtggcgcttggggtcagtaaggttcagatgaagtttctgcacttgctcagcgttgaa
gccactcagtccatctcgctccactgctacagtgagccagataccacctcctcctcctcc
tcctccatcacctcctccatcttctcctccatcaccacctcctccacccagacgcctggt
aatgtgcgcttctatggttggaacggccaggtgctcgagaggagctccgtaccacatcac
gtgcttcaggacaactgtggggtacgtgacggccaatggcaccactctcggttcctgctg
cacactcaggacccgacgctgctccctgtggtggacgtgcagggtttcccgccccggagc
acagggcctgagcagcgccacctggaggtcggacatgtctgcttcctgtga
DBGET
integrated database retrieval system
