Ictalurus punctatus (channel catfish): 108278011
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Entry
108278011 CDS
T04658
Name
(RefSeq) serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108278011
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108278011
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108278011
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278011
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278011
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108278011
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108278011
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108278011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
P2R3B_EF-hand
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
DUF4116
Motif
Other DBs
NCBI-GeneID:
108278011
NCBI-ProteinID:
XP_017346613
Ensembl:
ENSIPUG00000008145
UniProt:
W5UHW3
LinkDB
All DBs
Position
17:complement(25337309..25394090)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAATYRIVVSSINYYNSVVVDRRVQQTVHYCNGPCGAIKHGLSCTVAHRSTCAELLDSSQ
TYTDRPIGYHESASKMLENGGCGHVGFGEDFHYQVVPRVKKGSAIQSSTSLKDITGEAIN
LASGKMKEFSFEKVKYSSSHVTFRKGRKVRPDSFSRRSADLDVIYGHFGNDENCPPQKAA
PDEQKLNRSISLEQNLNNAASFYLNNLTEENLIARILEKTKTDSNASGEDIKACLDILLK
CSEDLKKCTDIIKQCIKRKSMSGDGEDSGNPDAIYKTMMARLSSYLKRLPFEIDLGHTGR
PEHNDLSELVNTLHGLQQRPFSPFGNEQPPRYEDVVQSPPSTKVQSKASSCSSPESLDGT
RDLPGSLTSAQGLAVSLPSHSSANGLQYSNLPSSTGSTKPSTLHYPISTGRHDASSSTNS
ISKDTSMETLYIEEDADVGRALDRKQGSSASESRQLSRRHDIISGPSAGITDKLPDLSRN
GTVYTPNVETGSSQAYTPSHSTESRMLTNSTPHITREGVDEIDKLLMDLECLSQNIQKEP
PLPPKQRQINAYQKNMHQIGSSGINGPPCPNPPAISSAKSTNRNTEEAGEEDDGALLLRI
LESIESFAQELVDCGAGTGTQSKECEVMRLLQDTLAKTELASEIVPASETAPGLSPAATP
IASATPVPVAVPSATPAKVLSPFISARDTGSTILIQQTPEVIRIQPEKKPVSPPPPPIPR
SPSPPPPAPPPPSINIPRFYFPTGLPNLIVNIDEAIAKVEAAFAKLQEEKADIYEMGKIA
KACGCPLYWKAPMFNCAGGERTGFVSVHSFIATWRKLLHSCYDDASKFVYLLAKPGCTYL
EQEDFIPLLQDIVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWTGRITMTELRRS
NFLQTLALLEEEDDINQITDYFSYEHFYVIYCKFWELDTDHDLFIDPKDLSRYNDHASSS
RIIERLFSGAVTRGNSVQREGRMSYAEFVWFLISEEDKKNPTSVEYWFRCMDMDGDGVLS
MYELEYFYEEQCERMEGMGIEPLPFQDLLCQMLDLVKPESQGKITLRDLKRCRMAHIFFD
TFFNLDKYLDHEQKDPFSVQKDVDSEGPEPSDWDKYASEEYEILVAEETVSEQLHDGSFE
DDYECEELPITSEIGNKMDKLVISDLSP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacctatcggattgtggtcagcagtataaactattataacagtgtcgtagtg
gaccgacgtgttcagcagaccgtgcattactgtaacggaccatgtggagcgataaaacat
ggacttagctgcactgtggctcatcgtagtacctgtgctgaactgttggattcctcccag
acgtacactgaccggccaatcggctaccacgaatctgcatcgaaaatgcttgaaaatggt
ggatgcggtcatgttggatttggtgaggatttccattatcaggtcgttccacgagtgaag
aaaggatctgctatccagagctcgacgagcctgaaggatatcaccggagaggcgatcaac
ttggccagcgggaagatgaaggagttctccttcgagaaggtgaagtactcctctagtcat
gtgaccttcaggaaaggtagaaaggtaaggcctgactcgtttagccggaggtctgccgac
ctcgacgtcatctacggacacttcggcaacgatgaaaactgtcctccgcagaaagcggca
ccggatgagcagaagttgaaccgaagcatctcactggagcagaatctgaacaatgcagcc
tcattttatctcaacaacctcacagaggagaacctcattgcccggattctcgagaagacc
aaaacagacagcaatgcttctggggaagacatcaaagcttgtttggacatcctactcaag
tgctcggaggatctgaagaagtgcacagacattataaagcagtgcataaagaggaagtcc
atgagcggagacggtgaggattctggaaatccggatgctatttacaaaaccatgatggcg
cgactctcaagctacctaaagaggctgccgtttgagattgaccttggacatacaggaaga
ccagagcacaacgatctatctgaactggtgaacactctccatggacttcagcaaaggcct
ttctcaccttttggcaatgagcagcctcctcgatatgaggatgtggtccagtcccctcca
tcaacaaaagtccagtctaaagcctcatcttgctcatctccagagtctcttgatggcacc
agggatctcccaggaagtttaacatcagctcaaggcctcgctgtatcactcccttcccat
tcatctgcaaatggactgcagtattccaaccttccctcttccactggcagcaccaaaccg
tccacccttcattatcccatctccactggccgccatgatgcctcctcctccaccaacagc
atatccaaagacacctccatggagaccctgtacatcgaggaggacgctgacgtaggtcga
gcactggataggaagcagggatctagtgcttcagagtccaggcagctttcaaggagacat
gacataatatcaggtcccagtgctggcatcactgacaaacttcctgatctcagtagaaat
ggaactgtatatacacccaacgtggagacaggaagtagccaagcttatacaccatcacac
agcaccgagtcaaggatgctcacaaattcgactccacacatcaccagggaaggtgtagat
gagattgataaactactaatggatttggagtgtctctctcagaacattcagaaggaacca
ccactaccaccaaagcagagacagataaatgcataccaaaaaaatatgcaccagattggc
tcctcggggattaacggccccccttgtccgaatcctcctgccatctcgtccgccaagtca
acaaatcgcaacacggaagaagccggcgaggaggacgatggcgctctcttgctacggatc
ctggagagcatcgagagcttcgcccaggagctggtggattgtggagccggaacaggaact
caatcaaaagagtgtgaggtgatgcgcctccttcaagacacattggctaagactgaactg
gcttcagaaattgttcctgcatcagaaacggcaccaggactttcacctgcagccacacct
atagcttcagctacacctgtacctgtagctgtaccctcagcaactcctgctaaagtcttg
agtccgttcatcagtgcgagagacacgggatctactatactcatccagcagacgccagaa
gtcatcaggatccagccggagaagaaacccgtctctcctcctcctcctcccatccctcgt
tctccttctcctcccccacctgccccccctcctccctccattaacattccacgcttttat
tttcccacgggtctcccaaacctcatcgttaatatcgacgaggccatagcgaaagtcgag
gcggccttcgccaagctgcaggaggaaaaggccgacatctacgagatgggcaagatcgcc
aaggcatgcgggtgtccgctgtactggaaggccccaatgtttaactgtgcaggaggagag
aggactggcttcgtctctgtccattcatttatcgccacatggcgaaagttgttacacagc
tgctatgatgatgcgtccaagtttgtttacttgctggccaagccgggctgcacgtacctg
gaacaggaagacttcatccccctcttacaggacatcgtggacactcatccgggtctgaca
tttttaaaagatgctcctgaattccattcccgctacatcaccaccgtgatccagaggata
ttttacacagtgaatcgctcgtggacaggcaggatcaccatgacggagctcaggagaagc
aacttcctgcagactctggccctgttggaggaggaggacgacattaatcagatcactgat
tatttctcttatgaacacttctatgtcatttattgtaagttctgggagttggacaccgac
cacgacctcttcatcgaccccaaagatctctcccgctacaacgaccacgcttcatccagc
aggatcatcgagaggcttttctcaggagctgtcactcggggaaactctgtgcagagagaa
ggacgtatgagttatgctgagtttgtgtggttcctcatctcagaagaggacaagaagaac
ccgacaagtgtggagtactggttccgctgtatggatatggatggcgatggcgttctctcc
atgtatgagctggaatatttctatgaggaacagtgtgagcggatggaggggatgggaata
gaaccgctgcccttccaagatctgctgtgccagatgcttgatctcgtcaaaccagagagt
caaggtaagatcactctgcgtgatctgaagcgctgcaggatggcccacatcttcttcgac
acgttctttaacctggataaatacctggaccatgagcagaaagacccgttctccgttcag
aaggatgtggacagtgagggtccggagccctcagactgggataaatacgcatcagaggaa
tacgaaatcctggtagcggaggagactgtcagtgagcagctgcatgacgggtcttttgag
gatgactacgagtgtgaggagcttcctattacatctgagatcggaaacaaaatggacaaa
ctggtgatctccgatctgtccccatga
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integrated database retrieval system
