Ictalurus punctatus (channel catfish): 108278740
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Entry
108278740 CDS
T04658
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108278740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108278740
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278740
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108278740
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108278740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
108278740
NCBI-ProteinID:
XP_017347745
Ensembl:
ENSIPUG00000001010
UniProt:
A0A2D0SZI1
LinkDB
All DBs
Position
18:complement(17704078..17717237)
Genome browser
AA seq
1489 aa
AA seq
DB search
MSAEAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFAEDIVAIIEAQIAKAPPA
EKLPVLYLVDSIVKNVGGQYLEVFTKNLITSFICVFEKVDENTRKCLFKLRSTWDEIFAL
KKLYALDVRVNSLDPAWPIKPLPPNVNASIHVNPKFLKSTEELAPHPTVTEKNLAEEQII
RQQLLAKQKQLLELQQKKIELELEQTKAQLAASTNHPPHNGPVKSESPAVSQPGPAHHKS
RPPPQADKPSNRDPRLNRASAPSVNVKEHGPFRKENQGTPSVVNAPEKRVPVPPERPSKL
MRIPKKDTSAADEKAKSKSVSPLSKGVFHKSKDSEPEHQKTLDVNKKDPRLRKQMHEKTD
LKEDEVKEKKKSKEREDIGKGTEPQRSSNSRGKLVNGSLNKHDRFDTFQKQDIKVNKTNI
RKRSRSRSRSPPSHFPKRKDRRSPKRRTRSITPPPKSGKARQLSKHIEEDNQQVNVREDR
SAPKKNVSELRRIKRPLEDRTPEHRDVQPQRALSVEHKSAKDIKRWRSGWEENKPLKQLD
PDISHGKPGPQRHKVWNSYQRPPPIPRTLKQHRLSVDANLQIPEVLNSASKRDLLRKASQ
RLDSGELTQEEFLNVAHQIKQIFQYQEERQRSDSWEGTNDDGSCTRKKPRGPMSDAQLSY
LEHKSKLRRTQLQRPVQQSSLLSEKAQQHGPQQEQDHSFPSDALKKGSDAFKPFTGPDDP
RRNDRPPSLTGPPFRNSPSPVSCDGSVGKSSSLPFEGSAQSIDLDQLEDGDISPRFESPN
SVHSDTGPDSDAPLGLDATSRHEILSGPGRVGRSLNESPGQTPPHVSEGLSTQVNMPRHD
GANVLQRFDGHMSSHSQFEGTHSLMGQPRPEGPSRPHPPARYEGNAGPGRYDGPAAHGPP
RFEGHGRYDGPGPHRFERPPQLKGPGRYENQSVSHGPIRFTEPHGRFEGPGSGRFDGPVR
HQGPGRFDGPGPVRYNSPMQSNRFDGPARFENPHIPQGPPGGFEGPIRYPSGMVNYEGPR
RLEGPGNQSGMMRFDNPAQPAPMRFDGQPSGMPRFDSTPQGPPRYHGPTNMQNAFRPQGQ
MMMIDQPQNQGPMLNPAIPPHSFNIGAPNAFEGQPLPFHMQPNVSQGSSFNVPEPTPSGF
QNTYRPVGPFPGTAPANHPQPIPVMPAPVQNFGPPNPAPFNPPGSQFVQPESHLGQMDVN
DLMAKLIDFGIIKPTPTDSNNESTSVTQSQSVPEEEEQEEEEQDDDDTLPDLTGFVVDDM
KQRHESVITKLYTGIQCYSCGMRFTASQTDIYADHLDWHYRQNRSEKDISRKVTHRRWYY
SLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKNQEAAKEREFQSVKAAADVVHESCEIC
QEQFEMYWEEDEEEWHLKNAIRVDEKTYHPLCYEDYTKTSSFVDSTPSPNKMLTENPLNA
FLKQEREGEGSCCSIKEEPTEGDTEAVTVKQEVEDESEGGSQTISAIPF
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaagctgcgagggaagacgcctgtcgagagtatcagtcgtctcttgaagac
ttgactttcaacagcaaaccgcacatcaacatgctgaccatcctcgctgaagagaatctc
cagttcgccgaggatatcgtcgctataattgaagcacaaattgccaaggcgcctcctgct
gagaagcttcctgttttgtacttagtggattccatagtgaagaatgttggaggacagtac
cttgaagtgtttactaaaaacctaatcacttcctttatatgtgtgtttgagaaggtggat
gaaaacactagaaaatgtcttttcaaattgcgttccacctgggacgaaatttttgccttg
aagaagctgtatgcattggatgttcgtgtgaactcgctagatcctgcttggcccattaag
cctttaccaccaaatgtgaacgccagcattcatgtcaaccccaaatttttgaagtcgact
gaagaactagctcctcatcccacagtcacagagaagaatttggcagaggaacaaataata
aggcaacagttgcttgccaagcaaaaacagttgttagaacttcaacagaagaagatagag
cttgaacttgaacaaacaaaagcgcaactggcggccagtacaaaccacccaccccacaat
ggtccagtcaagtctgagtcaccagctgtgagtcagccaggtcctgcacatcacaagtca
cggcctccaccacaagcagacaagccatcaaacagagatcctagattaaacagagcttcc
gccccatccgtaaatgtaaaggaacatgggccgttcaggaaggagaaccaaggcacaccg
tctgttgtcaatgcacctgaaaagagagtacctgtacctccagaaaggccaagtaagcta
atgagaataccaaaaaaagatacctctgcagctgatgaaaaagcaaagtccaagtcggtc
tcaccattgagcaaaggagtctttcataaaagcaaagactccgagcctgagcaccaaaag
acattagatgttaataaaaaggacccgaggttgcgaaagcagatgcatgagaagactgat
ctgaaagaggatgaagtcaaggaaaagaaaaaaagtaaagagcgggaagacattggcaaa
ggcaccgagccacagcggtccagcaactccagaggcaagctagtaaatgggtctctgaat
aagcatgaccggtttgatacttttcaaaaacaagatattaaagtcaataaaacaaacatc
aggaaaaggtctcggtctagatctcgttctccaccttcgcactttcctaaaagaaaagac
aggcggtccccaaagagaagaacgaggagcatcactccacctccaaaatccggaaaggct
aggcagttaagtaaacatatcgaagaggataaccaacaagtgaatgtcagggaggatcgg
agcgcaccaaagaagaatgtttctgagttgaggcggataaaaagaccactggaagataga
actcctgagcacagagatgtccagccacagagggcattatctgtagagcataaaagtgca
aaagacatcaagagatggaggagtggatgggaagaaaataaacctcttaaacaactcgat
ccagatatctcacatggcaaacctgggccacaaaggcataaagtgtggaacagctatcag
agaccacccccgataccacggacactgaaacagcaccgtctgagtgttgatgcaaacttg
caaattccagaagtgcttaattctgccagcaagagagatcttttacgaaaggctagccag
cgattggattctggcgagctaacccaggaagaattccttaacgtggcccatcaaatcaag
caaatatttcagtatcaagaagaaagacagcgctctgattcttgggagggaacgaatgat
gatggttcttgcacaagaaagaaaccccgtggtcctatgtctgacgctcagctctcttac
cttgagcacaagtcgaagctgagaagaacacagctgcaacgcccagttcagcagagttca
ctattgagtgagaaagcgcaacagcatgggcctcaacaagagcaagatcattcattcccc
tcagacgcactaaaaaagggcagtgacgcctttaaaccattcacagggcctgatgaccct
agaagaaatgacagaccaccatctctaacaggacccccttttagaaattccccaagtccg
gtcagttgtgatggaagcgttgggaaatcttcaagtctgccatttgaaggatcagcgcaa
tccatagatctggatcaacttgaggacggagatatcagtcccaggttcgaaagtcctaat
agcgttcactctgatacggggccggacagtgatgctccactaggtttagatgctacttca
aggcatgaaattttgtctggacctgggagagttggccgaagccttaatgaatctcctggc
cagacaccgcctcacgtctctgaaggccttagcacacaagtaaatatgccaagacatgat
ggtgcaaatgtcctgcaaagattcgatggccatatgagttcccattctcagtttgaagga
acacacagccttatgggacagccacgaccagagggtccgtccaggcctcatcctccagca
agatatgagggaaatgcaggtccggggagatatgacggtccagctgctcacggtccacct
aggtttgagggacatggccgatatgatggtcctggaccacacaggtttgaaagaccccca
cagctgaaagggcctggaagatatgagaaccagtcagtttcacatgggccgattaggttt
acagagcctcatggccgattcgaagggccaggatcaggtcgttttgatggtccagtgcga
catcaaggtcctggaagatttgatggcccaggacctgtgcggtacaacagtccaatgcag
tcaaacagatttgatggccctgcaaggtttgagaacccccatataccacaaggccctcct
ggaggatttgaagggccaataaggtatccttccgggatggtaaattacgagggaccaagg
agacttgaagggccaggcaatcagtcaggcatgatgcgcttcgacaacccagcacaacca
gcaccaatgagatttgatggacaaccctctggcatgccaagatttgactctacaccacag
ggtcctccacgataccatggacctacaaacatgcaaaacgcattcagaccacaagggcag
atgatgatgattgatcagcctcagaatcagggtccaatgttaaatcctgccattccaccc
cacagttttaacataggagcacctaatgcctttgaaggtcaaccactgccatttcacatg
caaccaaacgtctcacaggggtccagctttaatgtgccagaacccacaccttcaggattt
cagaatacgtacaggcccgttggtccatttcctggcactgctcctgcaaaccaccctcag
cctattcctgttatgcctgctccagttcagaactttggaccaccaaacccagcgcctttc
aacccaccaggttcacagtttgtacagcctgagagtcatctgggccaaatggatgttaat
gatctgatggctaaactgatagactttggaataatcaaaccaacaccaacagactctaac
aacgagtccacatctgtgactcagtctcagagtgtaccagaagaagaagaacaagaggag
gaggaacaggacgatgacgatactctccctgatttgaccggctttgttgtcgatgacatg
aaacagagacatgaaagtgtcatcaccaaactgtacactggaatccagtgttactcctgt
gggatgcgctttactgcgtctcagactgatatctacgccgatcacttggattggcactac
agacaaaaccgctctgagaaggacatcagtaggaaagtaacgcaccgacggtggtactac
agtctcacagactggattgaatttgaagaaatcgctgatctcgaggagagggcaaagagc
cagttctttgaaaaagtgcatgaggaggttgtccagaagaaccaggaagctgctaaagag
agagaattccagagtgtgaaggctgcagcagatgtcgttcatgaatcttgtgagatttgc
caagagcagtttgagatgtactgggaagaagacgaggaggaatggcacctgaagaacgcc
atcagagttgatgaaaagacataccatcccttgtgttacgaagactacacaaaaacctct
tcctttgtggattctaccccatcccccaataagatgctcacagaaaaccctttaaatgca
ttcttaaaacaagagagagaaggtgaggggtcatgctgcagtattaaagaagagccaact
gagggagacacagaggctgtaacggtaaaacaggaggttgaggatgagtcggaaggaggg
tcacaaacgattagtgcaattccattttaa
DBGET
integrated database retrieval system
