Ictalurus punctatus (channel catfish): 108279013
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Entry
108279013 CDS
T04658
Symbol
ebf1b
Name
(RefSeq) transcription factor COE1-A isoform X1
KO
K09103
early B-cell factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108279013 (ebf1b)
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108279013 (ebf1b)
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GFIT
Motif
Pfam:
COE1_DBD
COE1_HLH
TIG
HLH
Motif
Other DBs
NCBI-GeneID:
108279013
NCBI-ProteinID:
XP_017348377
Ensembl:
ENSIPUG00000006093
UniProt:
A0A2D0T0C8
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Position
18:21863117..21971554
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AA seq
603 aa
AA seq
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MFGIPESVQRGGSTLKQEPLGAGMNAVRTWMQSAGVLDANTAAQSGVGLARAHFEKQPPS
NLRKSNFFHFVLALYDRQGQPVEIERTSFVGFVEKEKETTGEKTNNGIHYRLQLLYSNGI
RTEQDFYVRLIDSMTKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDP
VIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVSVEGHVLAVSDNMFVHNNSKH
GRRARRLDPTEGTPSYLEHAAPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTMLV
WSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRLQ
KVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYNVPRNHNQ
LTGLTNSSVHASMMGVNSFTGQITVNVSESSQGGNQGFNRNTSSVSPHSYVPSPTPQQSS
YSSVATSMNGYGSTAMSNLSGSPSFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSGI
FSFSPANMVSAVKQKSAFAPVVRPQSSPPPTCTSTNANGLQDQSFVDSNKYSTASALQGL
AFS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggataccggagagtgtgcagcgcggcggaagcactcttaagcaggagccgctg
ggcgccgggatgaacgccgtgaggacgtggatgcagagcgccggcgtgctggacgccaac
accgccgcgcagagtggagtggggttggcccgcgctcactttgagaagcagccgccgtcc
aacctgcgaaaatccaacttcttccacttcgtgttggctctgtacgaccggcaggggcag
cccgtggagatcgagagaacatcattcgtcggattcgtggaaaaagagaaggagacgaca
ggagagaagacgaacaatgggatccattacagactccagcttctctacagtaacggcatt
aggacggagcaggatttctacgtgcgtcttattgattcaatgaccaaacaggcgatcatc
tacgaaggtcaggacaagaaccccgagatgtgtcgtgtgctactgacccatgaaatcatg
tgcagtcggtgttgtgacaaaaaaagctgcggcaaccgaaacgagacgccttctgaccct
gtgatcattgacaggttcttcctaaagttcttcctgaaatgtaaccagaactgtttgaag
aacgccggtaacccacgggacatgcggcgctttcaggtggtagtgtcgaccacggtgagt
gtagaaggccacgttctcgcggtgtcggacaacatgtttgtgcacaacaactccaaacac
gggcggagagcacggagactggaccctacagagggaacgccgtcatatttggaacacgca
gcaccttgcatcaaagccattagccctagtgaaggatggacaacggggggcgcgacggtc
ataatcatcggggacaacttcttcgatggattgcaggtgatcttcggcaccatgctggtg
tggagcgagctcatcacgcctcatgccatccgggtgcagacgcctcctcggcacatccct
ggtgtcgtggaagtgacgctctcctacaagtcaaaacagttctgcaaagggacaccgggc
agattcatttacacagctttaaacgagcccaccatcgattacggtttccagcggctacag
aaggtcatccctcggcatcctggagacccggagcgcttaccgaaggaagtgattttgaag
agagcagcagatctggtggaggcgttatatggaatgcctcataacaaccaggagatcata
ctgaagagggctgctgacatcgctgaggcactctacaacgtaccacgcaaccacaaccaa
ctcacagggctcaccaacagctctgtccatgccagcatgatgggggtgaactcctttact
ggacaaattactgttaatgtgtccgagtcctctcaaggaggcaatcagggcttcaatcgg
aatacaagcagcgtgtctcctcatagctatgtgccgagcccaacaccgcagcagagcagc
tacagcagcgtggccactagcatgaacggctacggcagcacggccatgagcaacctgagc
ggctcacccagtttcctcaacggctcggctgccaactctccgtatgctattgttccttcc
agtcccaccatggcctcatccaccagtttgccatccaactgcagcagctcctctggaatt
ttctccttctctccagcgaacatggtgtcagcagtgaagcagaagagcgcgtttgctcct
gtggtgcggccacagagctctcctccacccacatgcaccagcaccaatgccaatggcctc
caagatcagtcttttgtggactctaacaagtactccactgccagtgcactccagggcttg
gcgttctcctga
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