Ictalurus punctatus (channel catfish): 108280306 Help Entry 108280306         CDS       T04658                                  Name (RefSeq) collagen, type XI, alpha 1b   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism ipu  Ictalurus punctatus (channel catfish) Pathway ipu04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:ipu00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     108280306  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ipu00536]     108280306 Glycosaminoglycan binding proteins [BR:ipu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    108280306 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_1 Laminin_G_3 Motif Other DBs NCBI-GeneID:  108280306 NCBI-ProteinID:  XP_053529814 UniProt:  A0A9F7TAZ6 LinkDB All DBs Position 20:24612321..24700876 Genome browser AA seq 1837 aa AA seqDB search MIGMMDAQSWSTRKWLWHRGISTLFTVSVFLQTACVRAAEPVDVLKVLDFRSSPEGITKV QGLCPVRRGSKPDVAYRVDKKAQISTATKKLFPAGVFPEDFSILMTIKPKAGTQAFLLSV YDDKGLQQIGVEIGRTPIFLYEDQHGKPTPENYPLFRNINLSDGKWHRVAISVEKKSITM IVDCKKKISKPLDRSKKPVISTDGITVFGTRILDEEVFEGDIQQLLLVEDARAAYDYCEH YSPECGTPHQETPQAQEPEEEYTTEYTDYYDYTEGELGTTEVPVEETRTDIKPSTGEEEY FTETGLDYGTVDGSEPQTTAASPVKSEDVAYEEEIVDDYITGVEQVGVDSPSTPVETKTM ETVEGVETVEGVEGVEGVETVEGVEGDMTSFKEYDMSEFETKELDPSHYDDGFYDYGTIT PGPDPEQEHEVEMPAETGKSEGRTAGGYGGEKGQKGEPAVIEPGMLIEGPQGPPGPAGLP GSPGVQGSPGLRGDPGDKGPPGRPGLPGADGAPGPSGTVLMLPFRAGGEASKGPVVTAQE AQAQAILAQARLAMRGPPGPVGLAGRAGAMGNPGAPGLKGDSGESGPTGPRGLQGSTGPP GKAGKRGRSGADGARGMPGETGGKGDRGFDGLPGLPGEKGHRGESGPIGPPGSPGDDGPR GEDGQIGPRGLQGESGPRGLLGPRGSPGSNGQRGLPGLDGPPGPKGNMGPSGEAGPPGQQ GNTGPQGLPGPQGPIGPPGDKGPAGKPGLQGLAGADGPPGHPGKEGSAGEKGSVGHPGPQ GSIGYPGPRGVKGAEGVRGLKGGKGEKGEDGFPGFKGDMGLKGDKGESGVLGLRGEDGPE GPKGKSGPSGEAGPMGLAGEKGKLGVPGLPGYPGRQGPKGSTGFAGSAGASGEKGARGLA GKAGPRGQRGPTGARGSRGARGPTGKPGAKGTSGHDGPAGGPGERGPQGPQGPVGLPGPK GPNGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGSVGERGHPGSPGPP GEHGLPGAAGKEGGKGDPGPQGPAGKPGPPGIRGFQGLRGLPGTPGPGGLKGGEGPPGVP GPNGSPGERGGAGPGGPIGVPGRNGPQGLPGPAGEKGGPGDKGPAGPAGRDGIQGPVGLP GAAGPQGPPGEDGDKGEVGEPGQKGGKGDKGESGPSGPGGLQGPIGNPGPAGTDGEAGPR GQQGMFGQKGDEGPRGFPGLPGPVGLQGLPGPPGEKGETGDVGAMGPPGPPGPRGPQGSS GADGAQGPPGGIGSMGGNGEKGETGDAGNPGPPGETGSMGPKGEVGEKGETGPPGAAGPA GPRGPPGDDGPKGNLGPAGFPGDPGPPGEPGAGGLDGLPGDKGEDGEAGQQGPPGPSGEA GPPGPPGKRGSLGRTGPEGKQGEKGSKGEAGAEGPAGKTGPVGPQGPPGKSGAEGLRGIP GPVGEQGLPGAGGKDGPPGPLGPPGLPGLKGDPGFKGEKGHPGLIGLIGPPGEPGEKGDR GLPGVQGLSGGKGDGGGVGSSGPVGPPGPPGIPGTQGQKGSKGANGPAGQKGDPGLIGPP GPPGPPGDMIQSLPIQMSKKAKRSSDVQADEAVMDYGLEGMEGMEGMDEVYGSLNNLKLD IERMKFPLGTQDNPARTCKDLHLSQPDFPDGEYWIDPNMGCKGDSFKVYCNFTAAGETCI YPDKKSAGVRISNWPKESPGTWFSEFKRGKILSYVDIEENSITGVQMTFLKLLSSAARQN FTYICHQSVAWFDAKADNYNKALRFLGSNDEEMSHDNNPFIKAVYDACSQKQGYARTVLE INTPRIDQLPIIDVMLNDFGDPSQRFGFEVGPVCFLG NT seq 5514 nt NT seq  +upstreamnt  +downstreamnt atgatcgggatgatggatgcgcagagctggagcacgcgaaagtggctttggcatcgcggt atatcgactctcttcacagtatcggtgttcctgcagactgcgtgtgtgagagcagccgag ccagtggacgtgctgaaggttttggactttcgcagttctccagagggaataaccaaagtg cagggactctgtcctgtcaggagaggatccaaacccgatgtggcgtacagagtggacaaa aaggcgcagatcagcactgcgacgaaaaaactcttcccagccggagtatttcctgaagat ttctccatcctcatgaccataaagcccaaagcgggaactcaggccttcctcttatcagtg tatgatgataagggactgcagcagatcggggtggagatcggacgcactccaatcttcctg tacgaagatcagcacggaaaacccacgccggaaaattatccgttattccgaaacattaac ctctctgatgggaagtggcatcgtgtggcgatcagcgtggagaagaaatccatcaccatg atcgtcgactgtaaaaagaaaatctcaaagcctctggacagaagtaaaaaacctgtaatc agcacagacggcatcacggtgttcggcaccaggatcctggatgaggaggtgtttgaggga gacatccagcagctgctgttggtggaagacgcccgagctgcgtacgattactgtgaacat tacagtcccgagtgtggaacgccacatcaggaaacaccacaggctcaggaacccgaggag gagtacaccaccgaatacaccgattattacgactacacagagggagaactcggaactact gaggttcctgtcgaggagacgagaactgacatcaagcccagcacaggggaggaggagtac ttcaccgagaccgggctggattatggcactgtggacggatccgagccccaaaccacagca gcatcacctgttaaatctgaggatgtggcgtatgaggaggaaattgtggatgattacatc accggggtggagcaggtgggcgtggactcgccttccacacctgtggaaaccaaaaccatg gagacggtagagggtgtagagacggtagagggtgtggagggtgtggagggtgtggagacg gtagagggtgtagagggtgacatgacatccttcaaagagtacgacatgagcgagtttgag acgaaggaactggacccgagtcactatgacgacggtttctatgactacgggacaataacc ccgggccctgaccccgagcaggagcatgaggtggagatgcctgcagagactggcaaatca gagggtagaactgctggtggttatggaggtgagaaaggacagaaaggagaacctgctgtc atcgagccgggaatgctaatagagggaccacaaggaccaccgggacctgcgggtcttcca ggctctccgggagttcagggctctcccggtctccgtggtgatcctggtgataaaggtcct cctggtcgtcctggtctccccggtgctgatggagctcctggaccttcaggaacggtcctc atgctgccgttccgtgcaggaggtgaggcctctaaaggtccggtagtgacggcgcaggaa gctcaggctcaggccatcctggctcaggctcggctggcgatgaggggtccgcccgggcct gtggggttagctggcagagctggtgctatgggtaatcctggagcacctggtcttaaagga gatagtggagaatctggtcccactggtccgagaggactgcagggttccacagggcccccg gggaaggcagggaagaggggtcgttcaggagccgacggggcgagaggaatgccaggagag acgggaggaaagggagatcgaggctttgacggccttccgggtttacctggagagaagggg cacaggggtgagtccggcccgatcggacccccgggatctcctggagatgacgggccaagg ggagaggatggacagatcggaccgagaggactgcagggagaaagtggtcctagaggttta ctcggcccacgaggatctccaggttctaacggtcaacgtggtcttcccggattggatggg ccgcccggtcctaaagggaacatgggaccatcaggagaagcaggaccacccggtcagcag ggtaacaccggcccccagggtttaccgggacctcagggcccaatcggacctcctggagat aaaggtcctgctgggaaaccgggactgcagggtttagctggagctgacggtcctcctggt catccagggaaagagggatcggcgggagagaaaggatctgttggtcatccaggacctcag gggtctatcggctaccccggaccacgaggagtcaaaggagctgaaggagttcgtgggttg aaaggtggtaaaggggaaaagggtgaagatggtttcccagggtttaaaggtgatatggga ctcaaaggggacaagggggagtctggagtactcggactgaggggagaggacggaccggag ggaccgaagggaaaatccggaccatctggagaagctggacccatgggactggctggagaa aagggtaaactgggagttcctggattacctggatatcctggacgacagggtccaaagggt tctaccggtttcgccggttctgctggagccagtggagagaaaggagcgaggggactggct ggtaaagcagggccgagaggacagcgcggaccgacgggtgctcgcggtagccgaggagcg agaggaccgacgggaaaaccaggagcgaagggaacatcgggacacgacggtcctgctgga ggtcctggagaaagaggacctcaaggaccacaggggcccgttgggttgccgggacctaaa ggtccaaacggaccacctggtaaagacggactgccgggacacccaggacagagaggagaa actggtttccaaggaaagacggggccccctggtcctggaggagtcgtcggtccacagggt cctacaggagaaaccggatctgtgggtgagagaggacaccccggttccccaggacccccc ggagagcatggtcttcctggagcggcgggtaaagagggtggaaagggtgacccaggccct cagggtcctgctggaaagcccggtcctcctggtatcagaggtttccagggtctgagaggt cttcctggaacaccgggtccaggaggtctgaaaggtggtgaaggtcctcctggtgtgcca gggcccaatggctctccaggtgagagaggaggtgctggacccggcggtccgatcggagta ccaggtcgaaacggacctcaaggactcccgggacctgctggagagaaaggtggtccgggt gataaaggtcctgctggtcccgccggtcgtgatggtattcagggtccagtcggacttcct ggagctgcaggacctcagggaccacctggagaggatggtgataagggagaagtcggagaa ccgggacagaagggtggcaaaggggacaagggggaatcaggtccttctggtccaggtggt cttcaaggtccaattggcaatccaggtcctgctggcactgatggtgaagctggaccacga ggtcagcagggaatgttcggccagaaaggagacgaagggcctcgaggattccccggactg ccaggacccgtcggcctgcagggattaccaggacctccaggcgagaagggagagacgggt gacgtcggtgcaatgggtcctcctggtcctccaggtcccagaggtcctcagggttccagt ggagccgatggtgctcagggacctcccggtggtatcggctctatgggaggaaacggagaa aagggtgagacgggtgacgcgggaaacccaggacctcctggagagaccggttcaatgggt ccaaaaggtgaagtgggtgagaaaggagagacgggaccacccggagctgccggacccgca ggaccacgaggaccccctggagatgacggtcctaaaggaaaccttggacctgctggcttt cctggagacccaggtcctcctggtgagcctggcgctggtggactcgatggtcttcctgga gataaaggagaggacggagaagccggtcagcagggacccccgggtccatcaggtgaagcc ggacctcctggacctccaggaaagagaggctcgctcggacggacaggacccgagggcaag cagggagaaaaaggttctaagggtgaagccggagctgaaggaccagctgggaaaaccggg cctgttggacctcaagggcctcctggaaagtccggtgctgagggtctgagaggaattccc ggacctgtgggtgaacaaggacttcctggtgcagggggtaaagacggcccgccgggtcca ctgggtcctcctgggctccccgggttgaaaggtgatcccggttttaaaggcgaaaagggt catcctggtctgattggtctgatcgggcctccaggtgaaccaggtgagaaaggagatcga ggtttacctggagttcagggactatccggaggtaaaggtgatggtggtggtgtcggttct tccggtcctgttggtcctcctggacctcctggtattcctggaacacaaggacaaaaagga tccaaaggagcgaatggtccagcgggtcagaaaggagacccgggtttgatcggccctcct ggacctcctggtcctccaggtgacatgatccagtcgctgcccattcagatgtccaagaag gcgaagcgttcttcagacgtccaggccgacgaggccgtgatggattacggtttggaggga atggagggaatggagggaatggacgaagtctacggctccctcaataacctgaagctggac atcgaacgtatgaagttccctctgggcacgcaggacaatccggcccggacctgtaaagac ctgcatctcagccagcccgacttccccgacggtgaatattggatcgatcctaacatgggc tgtaagggagactcctttaaggtttactgtaactttacagcagcaggagagacgtgtatc tatcctgataagaagtccgcaggggttagaatatccaactggccgaaagagtctccaggg acgtggtttagcgagttcaagcgcggtaaaatcctctcatacgtggacatcgaggagaac tccatcaccggcgtccagatgacgttcctgaagttgctgagttctgcagcgagacagaac ttcacctacatctgccaccaatccgtcgcctggttcgacgctaaagccgacaactacaac aaggctctgcgcttcctcggctccaacgacgaagaaatgtcacacgacaacaaccccttc atcaaggccgtgtacgacgcctgctcgcaaaagcagggctatgctagaaccgtgctggag attaacactccgcgcatcgaccagctgcccatcatcgacgtcatgctgaatgatttcgga gatcccagccagagattcggcttcgaggtcgggcctgtctgcttcctcgggtaa

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