Ictalurus punctatus (channel catfish): 108280485
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Entry
108280485 CDS
T04658
Name
(RefSeq) cut-like homeobox 1b isoform X1
KO
K09313
homeobox protein cut-like
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108280485
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
108280485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
HTH_23
ATG17_like
Motif
Other DBs
NCBI-GeneID:
108280485
NCBI-ProteinID:
XP_053529671
UniProt:
A0A9F7QVQ3
LinkDB
All DBs
Position
20:4000249..4167359
Genome browser
AA seq
1396 aa
AA seq
DB search
MAANAGSMFQYWKRFDLQQLQRELDTTATLLANRQDESEQSRKKLIDQSREFKKNTPEDL
RKQVAPLLKSFQAEIDALSKRSKEAEAAFLNVYKKLIDVPDPVPVLELGQQLQLKVQRMH
DIETENQKLRETLEDYNKEFAEVKNQEVTIKALKEKIREYEQTLKNQAENLAQEKEQQLH
NDYAEKERRLQESQESMASRLEEAEHKAQNLQTALQTTQAELFDLKTKYDEESTAKADEI
EMVMTDLERANQRAETAEREAESLREQLTSANKSLQLATQIQKAPDMEQAVEVVSRSSLE
AELSAKEREMVQLVEDVQRLQASLAKLRENSSTQISQLEQQLSAKSVTLKQLEEKLQEQA
DYEEVKKELSILKSMEFGPSDNATAQDSSKPLEVLLLEKNRSLQSESASLRNANTELSGS
ASQKVKEETAPHVPTSVNSAPPPPAPSPLLGRPGIGPNSAGPPPESPTASSANGGHAFSP
ALDLYGTAFPLAGKVALGSLLQRQLMHTFYSKALQDFSHTHYTPLALAPAPPRQPCASPD
TNGTAPSPSRSEGAGSASEGEDMDTAEIARQVKEQLIKHNIGQRVFGHYVLGLSQGSVSE
ILARPKPWSKLTIRGKEPFHKMKQFLSDEQNILALRSIQGRQRESPGQALSRMFQEGPKR
RAGSEGAPRTGNITTRIRTPESGSDEAIKSILEQAKRELQVQKAADTTLPPSSSSGGGGG
GGGGSDEAIRSILEQARREMEAQQTSLSSSSSSSSSSSISSSLSQCDLSLLSPKVLAPSP
LGAPLTAYSSLALGLKKPPLLISCSSSSPSSPSPSPLLDFSGIKKERPASPGQDGASRVQ
WREQWWNNSQQERRATGLPDENHSMEDSKETPPRLLDAPQYWSEWHHAGSAYPELSGTRV
PRPARAPVPPLAPEQCQLFSCRELDTVELTQLVKEKLAKSGVCQRLFGEKVLGLSQGSVS
DMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQNSVTQPGQTQEGTPKTSGSCSPAPESP
LSSAEESVKSGGDPLGSAQAPVPEPSPSGEPVEGSQPGTPLPLTNLTPSGLSIQEMVAMS
PELDTYAITKKVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFV
RMQLWLSDPRNVDKLMDMKRMEKKAYMKRRHSSVSDAQQVDSALTGSEYGPGTSPQHHPQ
QHLKKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
ELFIEEIQAAGSGSASAGEGGSPSVHAGKGGDGCDGTDSDGAAEGRHDAPGDEKTDDMPK
EPTPSNSPTPRDPTTSAAEGPGTSGHQGATSALGLFSFSRNPKDNSLRKKKAANLNNIIH
RLEKAASKEEPSEWEF
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaatgcgggatcgatgtttcaatattggaagcgctttgatttacagcaactg
cagagagaactagacaccactgctacgctactggccaacagacaagatgagagcgaacag
tccaggaaaaagctcatcgaccagagccgcgaatttaagaaaaacacaccagaggatctg
cgcaagcaggtagctccattgctgaagagttttcaggccgagatcgatgcgttgagtaaa
agaagtaaagaagcagaggctgccttcttgaacgtctataagaaactgatcgatgtccca
gatcccgtcccggtgttggagctcggccagcagctgcagctgaaggtacagcggatgcac
gacatcgagactgagaaccagaagctgcgcgagacgctggaggactacaacaaagagttc
gccgaggtcaagaaccaggaggtgactatcaaagcacttaaagagaagatccgggaatac
gaacagaccctgaagaaccaggcggagaacctggcgcaggagaaagagcagcagctccac
aacgactatgcagagaaagagaggcgattgcaagagtcgcaggaatcaatggcctccagg
ttggaagaggcagaacacaaagcccagaatctacagacagcacttcaaaccactcaggca
gagctgttcgacctgaagaccaagtacgacgaggagtccacggcaaaggccgacgagatc
gagatggtcatgaccgatctggagcgagccaatcagagagcagagacagccgagagagag
gccgagtcactgagggagcagctcacgtcagctaacaagtccctacagctggccacgcag
atccagaaagctccggatatggagcaggcggtggaggtggtgtcacgctccagtctggag
gccgagctgagtgctaaggagcgggagatggtgcagctggtggaggacgtgcagagactg
caggccagtctggccaaactgcgcgagaactcctccacccaaatcagccagctagagcag
cagctcagtgccaagagcgtcactctcaagcaactggaggagaagttacaggagcaggcc
gactacgaggaggtgaagaaagagctgagtatcctgaagtccatggagtttgggccgtct
gacaacgccacagcgcaggactcgtctaaaccgctggaggtgttactgctggagaagaac
cgcagtcttcagtccgagagcgcgtcgctccgcaacgccaacaccgagctgagcgggtca
gccagccagaaagtgaaagaagagaccgcgccacacgtccccacctctgtcaactcagcc
ccaccccctcccgccccttctccactcctgggtcgcccaggtataggcccgaactctgcc
ggcccgcccccggagtcacctactgctagcagcgctaatggcggacatgctttctcacca
gcgctggacctctacggtaccgctttccccctggcgggtaaggtggcactgggctcactg
ctgcagcgccagctcatgcacaccttctactccaaagcgctgcaggacttcagccacacc
cactacacgcccctggcactggcacccgctcccccgcgtcagccctgtgccagcccggat
accaacggcacggcgccgtcgcccagccgctcagagggcgcgggcagcgcttccgagggt
gaggatatggacacggcagagatcgcacgccaggtcaaagagcagctgatcaagcacaac
atcgggcagcgagtcttcgggcactatgtgctgggcctgtcgcaggggtccgtcagcgaa
atcctggcacgcccaaaaccctggagcaagctcaccatccgcggcaaggagcccttccat
aagatgaagcagttcctctcggacgagcagaacatcttggcgctgcgcagcatccagggc
aggcaaagagagagcccaggccaggcccttagccgcatgtttcaggaaggcccgaagcgg
agagccggctcggaaggcgccccgcggacaggcaacatcaccacccgtatccgcacgccc
gaaagcggctctgacgaagccatcaagtccatcctggagcaagccaagcgtgagctgcag
gtccagaaagcagctgacacgaccctgcctccatcctcatccagtggaggaggaggagga
ggaggaggaggttcggacgaggccatccgctccatcctggagcaggcacggcgcgagatg
gaggcccagcagacgtccttgtcgtcctcgtcttcgtcgtcgtcctcttcctccatctcc
tcctccctgtctcagtgcgatctctcgttattgtcgcccaaagtgttggcaccatcgcca
ctgggcgcccccctgaccgcctacagttctctggcgctgggcttgaagaagcctcctctt
ctgatttcctgttcatcctcctcaccctcctcaccttctccgtcccctttactcgacttc
agcggcattaagaaggagcgtccggcatctccaggccaggatggagcctccagggttcag
tggagggagcagtggtggaacaactcgcagcaagagcgcagagcaaccggcctgcccgac
gagaaccacagcatggaagactccaaggagacgcccccccggctgctcgatgcccctcag
tactggagcgagtggcaccacgccggctccgcctacccagagctcagcggcacccgcgtg
ccaaggccggccagagcgcccgtgcccccgctggcgcccgagcagtgccagctgttctca
tgccgcgagctggacacggtggagctcacccagctggtcaaagagaagctagccaagagt
ggcgtatgccagcgcttgttcggagagaaggtactaggactctctcaggggagcgtaagt
gacatgctgtctcgtcccaaaccgtggagcaagctgacccagaaaggtcgcgagcccttc
atccggatgcagctgtggctcaacggcgagttgggacagaactcggtgactcaaccggga
cagacgcaagagggcacgccgaaaacatcaggcagctgcagtccggccccggagtcgccg
ctcagctcggccgaggagtccgtgaagagcggcggcgatccactcggcagcgcgcaggca
cccgttcccgagccgtccccatccggagagccagtggagggctcgcagcccggtaccccg
ctaccgctgaccaacctcacaccctccgggctcagcatacaggaaatggtggccatgtcg
ccggaactcgacacctacgccatcaccaagaaggtcaaggaggtgctcactgacaataac
ctcggtcagcgtttgttcggcgagaccatcctgggtctgactcagggctcagtgtctgac
ctgctggcccggcccaaaccctggcacaagctgagcctgaagggccgtgagccgttcgtg
cgcatgcagctgtggctcagcgacccgcgcaacgtcgacaagctcatggacatgaagcgc
atggagaagaaagcgtacatgaagcgacgccacagctcggttagcgatgcccagcaggtg
gacagtgccctgacggggtcagagtacggcccaggcaccagccctcagcaccaccctcag
cagcatctgaagaagccgcgggtggtcctagctcccgaggagaaggaggcgctgaagagg
gcctaccagcagaagccctacccctctcccaagaccattgaggaactggcaacccagctc
aacctcaaaaccagcaccgtcatcaactggttccataactacaggtctcgtatccgtcgg
gagctctttatcgaggagatccaggcggcaggctcaggctcggcttcagcaggcgaaggc
ggctccccctctgtccatgcaggaaaaggaggcgacggttgcgacggcacggattcggat
ggcgcggccgaggggcgacacgatgcccccggagacgaaaagaccgacgacatgcccaag
gagcccactccgtctaactcgccgaccccgagagaccccactacctcagccgccgaagga
cctggcaccagcgggcaccagggcgccacctctgccctcggcctgttcagcttctcgcgc
aaccccaaggacaacagcctgcgcaaaaagaaagccgccaacctcaataacatcatccac
cgactggagaaagccgccagcaaagaggagccgtccgaatgggagttctga
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