Ictalurus punctatus (channel catfish): 108280983
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Entry
108280983 CDS
T04658
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108280983
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108280983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
HDA2-3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
108280983
NCBI-ProteinID:
XP_047005510
Ensembl:
ENSIPUG00000005446
UniProt:
A0A979EJA8
LinkDB
All DBs
Position
21:complement(8643538..8696037)
Genome browser
AA seq
1990 aa
AA seq
DB search
MPGSLSNEEEGQDDLDFEDDVPDEDDETEHVRVPLSPLERFFSDDDSIKQKKKKPSKQKE
GRMPKVKKKKKEGCSSEHEAVSDREDQRSGSESSSYGMLKKKKKKPREKKEKKGKWRKKD
DDDDDDDDDGNMKEPKSSSQLMEEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPLIAKKN
PKIPMSKMMTVLGAKWREFSANNPFKGSSATAVAAAVAAAVETVNITPSISISSVQQLSP
MGQVKKAKTKEGKGPSARKKSKQPKDTKKKAKAKKPKLKAGQSSKRKKASSSEDDFLDDF
SDFDDISIHSASVRSDASGVPKKKTRRGRKKRKREDGDGYETDHQDYCEVCQQGGEIILC
DTCPRAYHLVCLEPELEKAPEGRWSCPHCEKEGIQWEAKDDDEEEEDPAGEEEDDHMEFC
RVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKILHWMWGD
PPLPPEPLSTQDGKKEDIPVKPPLKGRPERLLFVKWAGLSYWHCSWVSELQLELYHTVMY
RNYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPQYAAMEERFYRYGIKPEWLIIHRILN
HSFDKDGDVHYLIKWRDLPYDQCTWEIDDFDIPEYESFKQAYWDHREQMLGEDHRPLVVR
KGKSLKEEVKRRDAPPETPVVDPTVKFEQQPWYIDATGGTLHPYQLEGLNWLRFSWAQGT
DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPEFYVVT
YTGDKDSRAVIRENEFTFEDSAVKSGRKVFRMKKDTPVKFHVLLTSYELITIDQAILGSI
TWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFN
NLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY
YKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNLL
VKSSGKLTLLQKMLKKLKDDGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLR
QEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ
NKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEE
LFKDDVEAIGDSKDGEEGSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYLSSFKVAQYV
VREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDT
SQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPPLLARVG
GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLKGKSEKEFRAYVSLFMRHLC
EPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDMIPAGLEL
KKLTESLSSDPNTPVPASPAPTQPSTPVPSDKPESGPIPPEDKDSTEHESSKTAESETSK
ESECYPDKTSESEELKRGGAEQKSNEESEKKDDSPAELEPSANQTQPISKQNEQSANQTP
PIGQQSKDIENTAEKTEKDASVAVKLEDKEPKQGYKAAPHEPKSEDAIESQLNGEKEARD
EVDDGQKDEKNGAKARFMFNIADGGFTELHTLWQNEERVAVSSGKMYDIWHRRHDYWLLA
GIVTHGYARWQDIQNDPRYAILNEPFKTEMNKGNYLEMKNKFLARRFKLLEQALVIEEQL
RRAAYLNMTQDSTHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEE
LLSDMKADVTRLPSMLSRIPPVSARLHMSERSILSRLTNREPQPQQPFPQGAFACSSMYS
NSFGGGFRGPAGAAMVNYSQMPLGPYVSVSSNGPPAPSSHMDKKSSEVLRDVSPSDLKSS
KPSDVICIED
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctgagcaacgaggaagagggccaagacgatttggattttgaagacgac
gtgccagacgaggatgatgagaccgaacacgtccgcgtgccgctctcgcctctggagcgc
ttcttctcagacgacgactcgatcaagcagaagaagaagaaacccagcaagcagaaggag
ggcaggatgcctaaagtgaaaaagaagaagaaggagggttgctccagcgagcacgaggct
gtatcggacagggaggaccagcgctctgggagtgagagcagcagctacggcatgctgaag
aagaaaaagaagaagcccagagaaaagaaggagaagaagggcaaatggaggaagaaggac
gacgatgacgacgacgacgacgatgacggaaatatgaaggaacccaaatcttcgagtcag
ctaatggaggagtggggtctcgaggacgtccagtacgccttctccgaggacgattacaaa
accataaccaactacaaggccttcagccagttcctcaggcctctcatcgccaagaaaaac
cccaagatcccgatgtccaagatgatgacggtgttaggcgctaaatggcgcgaattcagc
gccaacaacccgtttaaaggtagttcggcgacggctgtagccgctgcagtggctgccgcc
gtggaaacggtcaacatcacgccttcgatctccatcagcagcgtccagcagctctctcca
atggggcaggtcaaaaaagccaaaaccaaagagggcaaggggccgagcgcaaggaagaag
agcaagcagccgaaggacacgaaaaagaaagcaaaagccaagaagcccaaattgaaagca
ggccagagcagcaagaggaaaaaagcctcctctagcgaagacgatttcttagacgacttc
tccgacttcgatgacatcagcatccacagtgcctccgttcgctccgacgcctcgggggtg
cccaagaagaaaacgagacgaggacgcaaaaagaggaaaagagaagacggagacggctac
gagacggaccatcaggactattgtgaggtgtgtcagcagggcggtgagatcattctgtgt
gacacctgcccccgagcctatcaccttgtgtgtctcgagcctgagctggagaaggccccc
gagggtagatggagctgccctcactgtgagaaggagggaattcagtgggaagcaaaggat
gatgacgaggaggaagaggaccctgcaggagaggaagaggacgaccacatggagttctgt
cgagtgtgtaaagacggcggagagctgctatgctgtgacacgtgtccttcctcctaccac
attcactgcctgaacccgcctctgcccgagatccccaacggagagtggctgtgcccgcgg
tgcatgtgcccccctcttaaagggaaagtccagaagattctgcactggatgtggggggat
ccgcctttaccccccgagcctctctccactcaggatggtaaaaaggaggacataccggtc
aaacctccactaaagggtcgtcccgagaggctgctgttcgtgaagtgggcggggctgtcc
tactggcactgttcctgggtcagcgagctacagttggagctctatcacacggtcatgtac
aggaattaccagcggaagaacgacatggacgagccgccacccttcgactacggctcgggt
gaagaggagcttaacaacgagaagaggaagagcaaagacccacagtatgccgctatggag
gagcgtttctatcgctatgggatcaaacccgaatggctaatcatccaccggattctcaat
cacagttttgacaaagacggagacgttcactacctgatcaaatggagagatttaccgtac
gaccagtgcacctgggagatcgacgacttcgacatccccgaatatgagagttttaaacag
gcctactgggaccaccgggagcaaatgctaggtgaagaccatcgtcccctagtggtgaga
aaaggaaagagcctgaaagaggaagtgaagaggagagacgctcctcctgaaactccggtt
gtggaccccacagttaaatttgagcagcagccgtggtacatcgatgctacaggaggaact
ctgcacccgtaccagctggagggtctgaactggttgcgtttctcctgggcacagggaacc
gataccatcctggctgatgagatgggactgggcaagacggtgcagacaatagtgttcctg
tactcgctctataaagagggtcactctaaaggcccgttcctggtcagcgctccattgtcc
accatcattaactgggagcgagaatttgagatgtgggctccggaattttacgtggtgaca
tacacgggcgataaagacagccgggcagtgatacgggagaacgagttcacgttcgaggac
agcgctgtcaaatcaggccgcaaagttttccgcatgaagaaagacacacctgtgaagttc
cacgtgctgttgacctcgtatgaattgatcaccattgatcaggctattctgggctccatc
acttgggcatgtttggtcgtggatgaagcccatagactgaagaataaccagtctaagttt
ttcagaattctgaatggctataagatttactacaagctgctcctgaccggtacgcctctg
cagaacaatctggaagagttattccacctgctgaacttcctcactccagagcgcttcaat
aatctggagggattcctcgaggagtttgctgacatttctaaagaagatcagattaagaag
ctgcatgacctgttgggacctcacatgctgcggaggctgaaggccgatgtcttcaagaac
atgccagcaaaaaccgagctaattgtgcgcgtggagctcagccctatgcagaaaaaatac
tacaagttcatcctcacgcgaaactttgaagctctgaactctaaaggaggcggaaaccag
gtttcacttctcaacatcatgatggacctgaagaaatgctgcaatcacccgtacctgttc
cctgtggcggctgtggaggcccctgtgttaccaaacgggtcctacgatgggaacctgctg
gtgaagtcctcaggcaaactcactctgcttcagaaaatgctcaagaagctcaaagacgac
ggacatcgcgtccttattttctcccagatgacgaagatgctggacctgttagaggacttc
ctggagttcgaaggctataaatacgagcgtatcgatggtggtataactggaggactgcgg
caggaggccattgatcgcttcaatgctccgggagcgcagcagttctgtttcctgctgtcg
actcgtgctgggggattgggaatcaatctggcaaccgctgatactgtcatcatctacgac
tctgactggaacccacataatgacattcaggcgttcagccgagcacatcgtattggacag
aataagaaagtgatgatctatcgctttgtgacacgggcgtcagtggaggagcggattacc
caggtggccaagcgcaagatgatgctcacacatctggtggtgcgtccgggcctgggctcc
aaaacaggatccatgtccaagcaggagctggatgacatcctgaagttcggcacagaggag
ctctttaaagacgacgtggaagccatcggtgacagtaaggacggagaggaaggcagtgtg
atccactacgatgacaacgccatctccaagctgctggaccgcagtcaggatgccactgag
gacactgagatccagaacatgaacgagtacctcagctccttcaaggtggctcagtatgtg
gtgcgggaggaggacggcgaggaggaggtgcagagggagatcattaaacaggaggagaat
gtggatcctgactactgggagaaactcctgcggcatcattacgagcagcagcaggaggat
ctggcacgcaatctggggaagggcaagcgcatccgaaagcaggtcaactacaacgacacg
tctcaggaggaccaagaatggcaggacgatctttcagacaatcagtccgaatactcagtt
ggatctgaggatgaggatgaagatttcgaggagagacctgaagggggacggcgacagtct
cgcaggcagctgaagagcgaccgggacaaacctctgcctccactgctggctagagtagga
ggaaacatagaggtacttggttttaatgcgcgtcagcgaaaggccttcctgaacgccatc
atgcgctggggtatgcctcctcaagacgccttcaactcgcactggctggtccgagacctg
aaggggaaaagcgaaaaagagttccgagcgtacgtgtcgctgttcatgagacacctgtgc
gagcctggagcagacggagcggagacgtttgcggacggcgtgccgagggagggcctgtcc
cgacaacacgtcctcacccggattggagtcatgtctctcgtgaggaaaaaggtgcaggag
tttgagcatgtgaatggcaaatacagcactccagatatgattcctgcaggtctggagctg
aaaaagctcacagagagtctctcttcagacccaaacactcctgtaccagccagtcctgct
ccgactcagcccagcaccccggtaccgtcagacaaacctgagagcggtcccattcccccg
gaagataaagacagcactgaacatgagagctcgaaaacggccgaatctgagacatccaaa
gaatccgaatgttatcctgacaagacgagcgagagtgaagaactgaaaagaggtggcgct
gagcagaagtcaaacgaagagagcgagaagaaagacgactcacccgccgaattggagccc
tcggccaatcaaacgcagccaatatctaagcagaacgagcagtctgccaatcagacgcca
cctataggacaacaaagtaaagatatagagaacacagctgagaaaacggaaaaagatgct
tctgttgccgtgaagttggaggacaaagaaccaaaacaaggttacaaagctgctccccat
gaacccaaatctgaggacgccattgagagtcagctgaatggagagaaagaagcgagggac
gaggtggacgatggccaaaaagacgaaaagaatggcgccaaggcacgcttcatgttcaac
atcgcagatggcggctttacagagctgcacactctgtggcagaatgaagaacgtgtcgct
gtgtcgtcaggtaaaatgtatgacatctggcaccggcgccatgactactggcttttggcc
ggcatcgtaactcacggctacgcccgctggcaggacatccagaacgacccacgctatgcc
atcctcaacgagcccttcaagaccgagatgaacaaaggcaactacctggagatgaagaac
aagttcctggcacggaggttcaagctgttggagcaggccctggtgattgaagagcagtta
aggcgggcagcttacctgaacatgacgcaggactccacacaccctgccatggcgcttaac
acgcgtttcgctgaggtcgagtgtctggctgagtcgcaccagcacctttccaaagagtct
ctggctggaaataagccggcgaatgccgtcctacacaaagtgctgaatcagctggaagaa
ctgctgagcgatatgaaagcggacgtgacgaggctgccgtccatgctctcccgcatccct
cctgtatccgctcgactccacatgtctgagagaagcatcctgagccgtctcaccaaccgt
gagcctcaaccccagcagccttttccacagggagcttttgcctgttcttcaatgtacagt
aacagtttcggaggaggatttcgaggtcctgctggagctgccatggttaactacagccag
atgcccctggggccgtacgttagtgtgtcctcgaacggtcctccagcaccaagcagccac
atggacaagaaatccagtgaggttttgagagacgtgtctccatctgacctcaaatccagc
aaaccctcagacgtcatttgcatcgaagactag
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integrated database retrieval system
