Ixodes scapularis (black-legged tick): 8024830
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Entry
8024830 CDS
T01131
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
isc
Ixodes scapularis (black-legged tick)
Pathway
isc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
isc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8024830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
isc03041
]
8024830
Spliceosome [BR:
isc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
8024830
Complex C
U5 SnRNP specific factors
8024830
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
8024830
NCBI-ProteinID:
XP_029828261
EnsemblRapid:
LOC8024830
LinkDB
All DBs
Position
Unknown
AA seq
975 aa
AA seq
DB search
MDADLYDEFGNYIGPELESDSDDDEDERYERQDGDAPEFQEDEDMDGGRDDDDMGDMQVV
LHEDKKYYPSAVEVYGPDVETIVQEEDAQPLTEPIIAPIKHRKFSYVEQDLPLTTFDLEF
LTDLMDNSELIRNVALIGHLHHGKTSFVDCLIEQTHPHMRAKECKNLRYTDTLYTEQERG
VSIKASPVTLLLQDLKQKSYIINVFDTPGHVNFSDEVTAAIRLCDGVVLFIDAAEGVCLN
TEQLLKHAVQEKLAICICINKIDRLMLELKLPPQDAYYKLKNIVDEVNALIALYSEDPQQ
QQVSPLLGNVCFGSSLYSLCFTLRSFASMYAQTFGGVNVAEFSRRLWGDIYFSNKTRKFT
KKPPHSSAQRSFVEFILEPLYKLFAQVVGDVDESLPKLLDELGIKLSKTEMKLNVRPLLR
LICSRFVGEFSGFVDMCVNHIPPPARVSKQKIEYIYTGPIDSELGEAMLKCDPEGPLVVH
TTKQYSTQDATSFHVFGRVMSGTLHANQDVRILGENYTSTDEEDSRVLACGRLWVHESRY
KVEVNRVPAGNWVLMEGIDQPVVKTSTIVDVGVQEELFIFHPLRFCTHSVIKIAVEPVNP
SELPKMLDGLRKVNKSYPLVNTKVEESGEHVIFGTGELYLDCVMHDLRKMYSEIDIKVAD
PVVCFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIESEVVQITWNRKRLGDF
FQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKGLLSMVKDSIIQGFQWATREG
PLCEEPIRNCKFKILDAVIANEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYYFVEVQ
APADCVSAVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFC
LSMFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSINKFFDDPM
LLELARQDVMLSYPL
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atggacgctgatttatacgacgagttcggcaactacatcgggcccgagctcgagagtgat
tcagatgacgacgaggacgagaggtacgagcggcaggacggagacgccccagaatttcag
gaggatgaagacatggacgggggccgagacgacgacgacatgggtgacatgcaagtcgtc
ctgcacgaagacaaaaaatattacccttcagcggtggaggtgtacggtcccgatgtggag
acgatcgtacaagaggaggatgcccagccgctgaccgaaccaatcatcgccccaataaaa
cacagaaagttttcatacgttgaacaggatttaccgttgacaacctttgacctcgagttc
ttgaccgatctcatggacaactctgagctcattcgaaatgttgcccttattggtcatcta
catcatggaaagacttcctttgttgactgcctgatcgagcagacacatccgcacatgagg
gcaaaagaatgcaaaaacctgcggtatacagacacactctacacagaacaggagagagga
gtgagcatcaaagccagccctgtcacgcttcttctgcaagacctgaaacaaaagtcatac
atcataaatgtcttcgacactccaggacacgtcaacttctcggacgaagtgactgcagcc
attaggctttgcgacggagttgtcctcttcattgatgcagcggaaggggtatgcctgaac
acagaacaactcctcaagcacgccgtgcaggaaaaactggccatctgcatctgcatcaac
aaaatcgacagactgatgctggaactgaagcttccaccccaggacgcctactacaagctc
aagaacatcgttgacgaagttaacgccctcattgctctctactccgaagacccccagcag
cagcaagtgtctccactgctgggcaacgtgtgctttggaagctcgctgtacagcctgtgc
ttcacgctgcgctcctttgcctccatgtatgcgcagaccttcgggggcgtcaatgtggcc
gaattctcgcggcggctctggggggacatctacttcagcaacaagacacggaaattcacc
aagaaacctccacacagttctgcgcaacgaagcttcgtggagttcatcttggaaccgctg
tacaagctctttgcccaggtggtcggagatgtggacgagagtctacccaagctcctcgac
gaactgggcatcaagctctccaagacagaaatgaagctcaacgtgcgtcccctcctgcgg
ctcatttgctctcgctttgtgggcgaattttctgggtttgtcgacatgtgcgtgaaccac
ataccaccgccggcacgggtttcgaagcagaagatagagtacatctacacagggcctatt
gactcggagcttggagaagcgatgctcaagtgtgatcctgagggccccctggtggtgcac
acgaccaagcagtactcgacccaggacgccaccagcttccacgtgtttgggcgcgtcatg
agcgggacgctgcacgccaaccaggacgtgcgcatcctgggcgagaactacacgtccacc
gacgaggaggactcgcgcgtgctcgcctgcgggaggctctgggtccacgagtcccggtat
aaggtagaggtgaacagggtgcctgccggcaactgggtgctcatggagggcattgaccag
cccgtggtcaagacgtccaccatcgtagatgtgggcgtccaggaggagctcttcatcttc
catccgctgcgcttctgcacccactcggtgatcaagattgccgtggagcccgtcaacccc
tccgagctgcccaagatgctcgacggactgcgcaaagtcaacaaatcataccccctggtc
aacaccaaggtggaggaatcgggagaacacgtcattttcggaactggagagctctacctg
gactgtgtcatgcacgatttgaggaagatgtactctgagatcgatatcaaggttgccgac
cccgtggtctgcttttgcgagacagttgtggagacgtcttctctcaaatgctttgctgaa
actccaaacaaaaagaacaagatcaccatgattgccgaaccactagagaagggtctggca
gaggacattgagagtgaggtggtgcagatcacgtggaaccgtaagcgtcttggcgatttc
tttcagacgaagtacgactgggatctccttgccgcccgttccatctgggcttttggtccc
gacgccacgggacctaacatcttggtcgacgacaccctgccttccgaggttgacaaaggg
ctgctcagcatggtgaaagacagcatcatccagggtttccagtgggccacacgtgaagga
ccactttgcgaagaacccatccggaactgcaagttcaagatcctggatgcggtgattgcc
aacgagcccattcacaggggtggtgggcagatcatcccaacggcccgcagggtggcatac
tcggccttcctcatggccaccccccgcctcatggagccctactactttgttgaggtccaa
gcgccggctgactgcgtctctgctgtctacacggtgctcgccaggcgcaggggtcatgtg
acccaagacgcacctgttcctggctctccgctgtacaccatcaaggctttcatcccagcc
atagactcctttggctttgagacggatctgcggacgcacacgcagggacaagccttctgc
ctgtccatgttccaccactggcagattgtgcctggagatcccctggacaagagtattgtg
attcgtcctctggagccacagcctgccccacacctggccagggaattcatgataaagact
cgcaggaggaagggactgagcgaggatgtcagcatcaacaagttcttcgatgaccccatg
ttgctggagctcgcaagacaggacgtcatgctctcgtaccccctgtga
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