KEGG   Isoptericola variabilis: Isova_2011Help
Entry
Isova_2011        CDS       T01520                                 

Definition
(GenBank) DNA polymerase LigD, polymerase domain protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
iva  Isoptericola variabilis
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:iva00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    Isova_2011
Enzymes [BR:iva01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Isova_2011
DNA repair and recombination proteins [BR:iva03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Isova_2011
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
2172096..2174657
Genome map
AA seq 853 aa AA seqDB search
MARSSASGGTTKQTVSVEGHRLQLTNLDKVLYPATGTTKGEVLHYLAEIAPVLIPHAANR
PATRKRWPDGVDGQVFFQKNADKSTPSWVRTRRIEHKTSANDYVLVNDLATLTWLGQTAT
LEVHVPQWQFGRTGVRHNPDRLVLDLDPGPGAGLPECAQVARWARAILVGMGLEPMPVTS
GSKGIHLYAALDGKQDSEQVSAVAKELARYLESEHPDLVVSDMKKSLRGGKVLVDWSQNN
GNKTTIAPYSLRGRDHPTVAAPRTWDELDDPDLRHLEYPEVLERVARDGDLLADLTQGHL
AALEPTPEHMARFERLEVYRSKRDPDKTPEPFGPSSPAADAPPGDTRPTFVIQEHHARRL
HWDFRLEHDGVLVSWALPKGEPTDPAKNHLAVQTEDHPLEYGSFEGTIPAGEYGAGEVTI
WDAGTYDLEKWVDGKEVIVTLHSERRGSRRLALIQTGGRDGDENSWLIHRTKEQPGGAGP
AEEPATGRDGPGRRPRSGTARRAPVELPDRPMLATAATQRELRGLDAAEWAFEMKWDGFR
TLATVTMPDDGTRGGEPSVRLTSRTGLDMTKTYPELQALAGMLSPDDLPAVLDGEIVALD
ARGRPEFRRLQQRANLQKKGDVEAARRRVKVDLMLFDVLALAGETLTDRTYDERRRLLER
TVRPARPVHVPPAFDGDLEAATDTSRELRLEGILAKRRSSRYAPGRRSREWLKLKHSRMQ
EVVVVGWRPLHAGEAREDDRTMGSLLLALPAPQHGDGALRYVGKVGTGFREKERTQIATR
LRGIERATPPVDGVPRAEARHARWVTPRLVGEVEYGDWTADPTDPDLVDEARLRHATWRG
WREDKAPADVRPE
NT seq 2562 nt NT seq  +upstreamnt  +downstreamnt
atggcacggtcctccgcctcgggcggcacgacgaagcagacggtgtccgtcgagggccac
cgtctccagctgaccaacctcgacaaggtcctctaccccgccaccggcacgaccaagggc
gaggtcctgcactacctcgccgagatcgcgcccgtgctcatcccccacgcggcgaaccgg
cccgcgacgcgcaagcgctggcccgacggcgtcgacggccaggtgttcttccagaagaac
gcggacaagtcgaccccgtcgtgggtccgcacgcgccgcatcgagcacaagaccagcgcc
aacgactacgtgctcgtcaacgacctcgccacgctgacctggctcggccagaccgcgacg
ctcgaggtccacgtgccgcagtggcagttcggccgcaccggcgtgcggcacaaccccgac
cggctcgtgctcgacctcgaccccggcccgggcgccggcctgcccgagtgcgcgcaggtc
gcacggtgggcgcgcgcgatcctcgtcggcatggggctcgagccgatgcccgtgacgagc
ggctccaagggcatccacctgtacgcggcgctcgacggcaagcaggactccgagcaggtc
tccgccgtcgccaaggagctcgcgcgctacctcgagtccgagcaccccgacctcgtcgtg
agcgacatgaagaagtcgctgcgcggcggcaaggtgctcgtcgactggtcgcagaacaac
ggcaacaagacgacgatcgcgccctactcgctgcgcgggcgcgaccacccgaccgtcgcg
gcgccgcgcacgtgggacgagctcgacgacccggacctgcgccacctcgagtaccccgag
gtgctcgagcgcgtcgcgcgcgacggcgacctgctggccgacctcacccaggggcacctc
gcggcgctcgagcccacgcccgagcacatggcgaggttcgagcgcctcgaggtctaccgc
tccaagcgcgacccggacaagacccccgagccgttcggcccgtcgtcgcccgcggcggac
gccccgccgggcgacacgagaccgacgttcgtcatccaggagcaccacgcccgtcggctg
cactgggacttccgcctcgagcacgacggcgtcctcgtcagctgggcgctgcccaagggc
gagccgacggatccggcgaagaaccacctcgccgtccagaccgaggaccacccgctcgag
tacgggtcgttcgagggcacgatcccggccggagagtacggcgccggcgaggtgacgatc
tgggacgccggcacgtacgacctcgagaagtgggtcgacggcaaggaggtcatcgtcacg
ctgcactccgagcgccgcgggtcgcggcggctcgcgctcatccagaccggagggcgggac
ggcgacgagaacagctggctcatccaccgcaccaaggagcagccgggcggcgccggtccg
gccgaggagccggcgaccgggcgtgacggcccgggccgccggccgaggtcgggcaccgcg
cggcgcgcacccgtcgagctgcccgaccggcccatgctcgcgaccgccgccacgcagcgc
gagctgcgcggcctcgacgcggccgagtgggcgttcgagatgaagtgggacggcttccgc
acgctcgcgaccgtgacgatgcccgacgacgggacccggggcggcgagccgagcgtgcgg
ctcacgagccgcaccggcctggacatgaccaagacctaccccgagctgcaggcgctcgcc
gggatgctgtcgccggacgacctgcccgccgtgctcgacggcgagatcgtcgcgctcgac
gcgcggggccgccccgagttccgccgcctgcagcagcgcgccaacctgcagaagaagggc
gacgtcgaggccgcgcggcgccgcgtgaaggtcgatctcatgctgttcgacgtcctggcg
ctcgcgggcgagacgctcacggaccgcacgtacgacgagcgtcgccgcctgctcgagcgg
accgtgcgcccggcgcggcccgtgcacgtgccgcccgcgttcgacggcgacctcgaggcc
gccaccgacacctcgcgcgaactgcggctcgagggcatcctcgccaagcgccggtcgtcg
cggtacgcgcccgggcggcggtcgcgcgagtggctcaagctcaagcactcgcgcatgcag
gaggtcgtcgtcgtgggctggcggccgctgcacgcgggcgaggcgcgggaggacgaccgg
acgatgggctcgctcctgctcgcgctgcccgcaccgcagcacggcgacggcgcgctgcgc
tacgtcggcaaggtcggcaccggcttccgcgagaaggagcgcacccagatcgcgacccgg
ctgcgcgggatcgagcgcgcgacgccgccggtcgacggcgtcccgcgcgcggaggcgcgc
cacgcgcgctgggtcacgccgcgcctcgtgggcgaggtcgagtacggcgactggacggcc
gacccgaccgacccggacctcgtcgacgaggcccggctgcggcacgcgacgtggcgaggg
tggcgcgaggacaaggccccggcggacgtgcgccccgagtga

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